G340594 (casd1)


Basic Information

Item Value
gene id G340594
gene name casd1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9137699 ~ 9139548 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU403582
aggcATTATTACCATTGGCTTTTATCTGCAGAATCTGTGGCCACATGGCCATTGTGGCATAGATGATCACAAACCAAAAGGTAACCAGAGGCACAAAGTAGTAGAACTGGTATGATCTGTCCATCACAAGGCAGAGCACTACCACCAGGAAATTGAGTCTAAAGAGAACCTAGAACAAACAAACCTCTTAGCGTGTACTTATCATTTATGGGACATACTGTGTATGGCCAGATGTGTATACAGACAAGCAAAAATAGGACACATAGTAGGACGCTGGAAATAAATACCTGGCACACTCTGTACAGTCCAAAGTCACCCTTTAACCAGAAGAAGGAGAAGTGGCCATATCCTGTCTGGAAGAGATAAGCTGCTACCAGGACGCGGACATGCATGTACACAGGTATGAACTGTAGAGGACAAGTAAGGTAAATGAGATAGTGGTCATATTGTAAAGCAAGTGTAAGCATGTTCAAATCAGAACTTACAGCACTGGCTCCGGATATATGATAGACGAGTATAACCAGCTGCATCCAGCCCTTCCATTCATCAGTCTGTTCTCTGTTCAGCAGTTTGGCCTGCAGAATGAAAGAGTAGCTACATAACATGACATAATAAAAAGCAGAGTTTGAAGAATGAGTAAAACTGACAGGAATTAAGTACAGGTACTAGAACTTTAACTCCACTTTCCACTGGGGGGAAAAacttagttggttctgtttcacaaaatataaacaaattatgaccaggataaagcagttactaaaggaGAATGAACGAACATTGTAAACACTTTACACATCGCCACATAAGCACCCAGTGTGTtcccatgttaatgaacatggccttTTTTTTCATCCAGAAAGCTTCCTATCTGACTGGCTGCAACAgcctgcatgaaaataaaaaactctCTGCCCCCGTGGGTTATGTTGGGTCCCGCAGGATCACAGTCCTGATTCACACCTCTAGTCCAATCCACAACGCTTGTGACACTAAACACTACCGGTGGGAAAAGGGCAACAGAGttcttcatttttaatcaaGAAAACCGAAGTATATATGTACAGCACTGTCAATGGAACTGGGACTAGAAATTGGATTGGTTGGGATTACACACCAAGCAAACTTGGACAACCATAACCCTGCAACATGACACAATGGGACAGCGAGCAAACAACACATATTTATTCTGTTTCCCCATTTTGGTATAATATCTATTGTTACTATCATTACTACACTCTAAAATTACTGGCTGCAAAATCATAAAGTTATGAGGGATTCTATGATTGTAAATAAGCCTACAATGTAcagaaagtgtgtttgtgtgtgatgtattaGGAAGATTACATCTCACATATgtgcaaaaggaaaaaagaatcaGTTAtggggagtaaaaaaaaatgcttagtGTAAACTGGCTATTCCCTGTACCTCTTTAGTGTTCTCATTGTAGAAAAACCCCAGCATAAATATATAGATGAGCGGGATGAAGaaggtggagtgtgtgtagaaCTTCTGCTCCTTCATAAAGATGTCTGCACGGTCACACAGGTAGAAGTAAAGCATGATGAGACCCATCTTGCAGATGGACTGTAACATGTTCTTTATGATGAGTGGAACTGCAGCAGTGGGAGGTTTCTTCTCCTCTCCACTCTCTACATCAGACACAGGCTTGCTCTTCCAGTGCCCGGTGTAGCCGAGTGCATGCAACACCAGGAAGCAGACAGCAGCTACCAGGAAAAGTCCAGCGGCCAGTTTCTGTAGCACACTCAGTGGAGGAACACTCTGACAACATGACCCATCGATAGGCTTCAGGATCTTGTTGCATAAGGAGTTCATCAGAACCATGG

Function

symbol description
casd1 Predicted to enable N-acetylneuraminate 7-O(or 9-O)-acetyltransferase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Orthologous to human CASD1 (CAS1 domain containing 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU403582 True 1850 lncRNA 0.42 1 9137699 9139548

Neighbor

gene id symbol gene type direction distance location
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding upstream 84369 9034462 ~ 9053330 (+)
dlx5a dlx5,dlx5a,LOC107670186,LOC106570474 coding upstream 263257 8872595 ~ 8874442 (+)
chrac1 chrac1,LOC107591666,LOC107580926,LOC107722130 coding upstream 294581 8839251 ~ 8843118 (+)
c23h6orf62 c24h6orf62,cunh6orf62,zgc:111986,LOC103042486,LOC107555566,LOC107724342,LOC107702127,LOC107743835 coding upstream 312874 8820384 ~ 8824825 (+)
ripor2 fam65b,LOC107555568,LOC102779249 coding upstream 322730 8767996 ~ 8814969 (+)
tfpi2 NA coding downstream 112558 9252106 ~ 9255479 (+)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776 coding downstream 124213 9263761 ~ 9315951 (+)
LOC113536235 NA coding downstream 441367 9580915 ~ 9594532 (+)
efcab1 efcab1 coding downstream 458021 9597569 ~ 9600349 (+)
pex1 pex1 coding downstream 464923 9604471 ~ 9618025 (+)
G340600 casd1,LOC107591593,LOC107665666,LOC107731667 non-coding upstream 1983 9135049 ~ 9135716 (+)
G340574 asb4 non-coding upstream 79218 9054400 ~ 9058481 (+)
LOC117595810 NA non-coding upstream 170972 8962937 ~ 8966727 (+)
G340517 NA non-coding upstream 219899 8916606 ~ 8917800 (+)
LOC117595890 NA non-coding upstream 246639 8875957 ~ 8891060 (+)
G340597 NA non-coding downstream 891 9140439 ~ 9141145 (+)
G340596 NA non-coding downstream 8263 9147811 ~ 9148293 (+)
G340592 col1a2,LOC107722140,LOC107667770,LOC107731699,LOC107669816 non-coding downstream 17910 9157458 ~ 9177134 (+)
LOC113536151 NA non-coding downstream 35395 9174943 ~ 9181214 (+)
G340687 NA non-coding downstream 106931 9246479 ~ 9247048 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 3520 9119014 ~ 9134179 (+)
sem1 NA other upstream 221853 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 852495 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 866200 8240697 ~ 8271499 (+)
G339324 NA other upstream 2420553 6711015 ~ 6717146 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 85056 9224604 ~ 9229638 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 1054199 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 1334935 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 2152743 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 2174982 11314530 ~ 11473323 (+)

Expression


Co-expression Network