G340596


Basic Information

Item Value
gene id G340596
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9147811 ~ 9148293 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU403584
AGACAGGTTAACTAGCTCTTCAGAGTGCCATTTCGCTGACTTTGCAGCAGTCATTAGCGGCTaagctaacacaacacacaggcTAATGTTTCACAGGCACTGTCAGGTTCAAAACAGTGCACGGCGGCGCAGAGCTCGCGAGCACCGCGGTGTTTACCGTGGCTAAACACTCACCTCCATAATGCCGAGAGACTGCGTGGAACACGGTGAGGAGAATGACAGCAACGAGAGACAGCAATTTTGCATTCTTAATGCtaaaatactgatttatttcCCGTTTGCCCAGGCTGTAGGCCAGTATCGCCATCTTTGCTCCTCCATGACAACGAGCAGATGGACGTGCGGTATTTGCGCCCCGCCCTTCTCGGTGAGTGACAGGCTGCCGCCACGGTGACCACGCCCCCTATCGCCTGATTATAATCTTAACAACATCCggaaaaacatggctgctggCCTCGCGGCTGTTTCACCCCAAACCGGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU403584 True 483 lncRNA 0.53 1 9147811 9148293

Neighbor

gene id symbol gene type direction distance location
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding upstream 94481 9034462 ~ 9053330 (+)
dlx5a dlx5,dlx5a,LOC107670186,LOC106570474 coding upstream 273369 8872595 ~ 8874442 (+)
chrac1 chrac1,LOC107591666,LOC107580926,LOC107722130 coding upstream 304693 8839251 ~ 8843118 (+)
c23h6orf62 c24h6orf62,cunh6orf62,zgc:111986,LOC103042486,LOC107555566,LOC107724342,LOC107702127,LOC107743835 coding upstream 322986 8820384 ~ 8824825 (+)
ripor2 fam65b,LOC107555568,LOC102779249 coding upstream 332842 8767996 ~ 8814969 (+)
tfpi2 NA coding downstream 103813 9252106 ~ 9255479 (+)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776 coding downstream 115468 9263761 ~ 9315951 (+)
LOC113536235 NA coding downstream 432622 9580915 ~ 9594532 (+)
efcab1 efcab1 coding downstream 449276 9597569 ~ 9600349 (+)
pex1 pex1 coding downstream 456178 9604471 ~ 9618025 (+)
G340597 NA non-coding upstream 6666 9140439 ~ 9141145 (+)
G340594 casd1 non-coding upstream 8263 9137699 ~ 9139548 (+)
G340600 casd1,LOC107591593,LOC107665666,LOC107731667 non-coding upstream 12095 9135049 ~ 9135716 (+)
G340574 asb4 non-coding upstream 89330 9054400 ~ 9058481 (+)
LOC117595810 NA non-coding upstream 181084 8962937 ~ 8966727 (+)
G340592 col1a2,LOC107722140,LOC107667770,LOC107731699,LOC107669816 non-coding downstream 9165 9157458 ~ 9177134 (+)
LOC113536151 NA non-coding downstream 26650 9174943 ~ 9181214 (+)
G340687 NA non-coding downstream 98186 9246479 ~ 9247048 (+)
LOC113536134 NA non-coding downstream 409404 9557697 ~ 9565526 (+)
G340967 NA non-coding downstream 479495 9627788 ~ 9669228 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 13632 9119014 ~ 9134179 (+)
sem1 NA other upstream 231965 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 862607 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 876312 8240697 ~ 8271499 (+)
G339324 NA other upstream 2430665 6711015 ~ 6717146 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 76311 9224604 ~ 9229638 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 1045454 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 1326190 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 2143998 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 2166237 11314530 ~ 11473323 (+)

Expression


Co-expression Network