LOC113536134


Basic Information

Item Value
gene id LOC113536134
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9557697 ~ 9565526 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU403973
tttattttattttatttttaataattatttgatagggggtattttattttgaaagaagGGTGTGCACTCTTATTAAAGGTAATAGTCACATTACAGAGAGGTACAAATCACAGCGCAATAGGAAGTCGTCCTGTTTCCTGCGGTGTCACTAGAGAGGAGAGGTAAGATCAACTGTGAAAAAGTATTCCATATGATGTTATATCTGACCATTAGTTCGAGTTATCAATAGGTTAAATGAAGTTTATTTGAGTGCTGTTAATGggtgtaaataatatataatgcgtatatatatatgtgtgtgtgtgtgtgtgtgtgtgtttgtgtataattatatatatatatatatata
>XR_003403660.2
ttttattttgaaagaagGGTGTGCACTCTTATTAAAGGTAATAGTCACATTACAGAGAGGTACAAATCACAGCGCAATAGGAAGTCGTCCTGTTTCCTGCGGTGTCACTAGAGAGGAGAGGTACGATTTCACGAGCTCCGTTCATCTGATGTTGAATTGTTTTATAGGCGTTCATGTCATGTTTAAAAGATCAACTGTGAAAAAGTATTCCATATGATGTTATATTTGACCATTAGTTCGAGTTATCAATAGGTTAAATGAAGTTTATTTGAGTGCTGTTAATGGGTGTATAGTATATTGCGTGAAATGGCGGCCTGGTGTGTGCGTCACGAGTGAGAGATGTGTTAGCGGCTAAGCAGGCAAAAGAGAAAGATTTGCAGATAACAGTacttgtctgtttgtgtgttttaccgCACAGtgtgtgtgcgctcttTCCTGCGATGTCACTAGAGAGGAGAGGCAAAAGAGAAAGATTTGCAGATAACAGTACTTGTCTGTTTGTGTGGTTTACCGCACAGAGGAGAGCGAGAGGGCGCTGCAATTAAATCCCCTTTGGCACAACCAGATTTGTGTggaaaatctttttattaacATCAAAATAACACAACGCAGAGGAAAAACCGCTACAAAACTGGTGCCGTGACCCATCGAATGGTTGATCGTTGTCGACTGCTGGGATTGCTGATGTGGAGTTTGACCTGCTCTGAGCGGAGCTGGAGGCGAGACTGTTGGACTGGTGAGTTGTGGCTTAGCTGGATCAGACGAGCACCGTGCTGGATCATTGAGGATTGTCATCAATTAACTGGATAAACTGGATGAAGGTATTTCTCATCATCAATTGACTGGGTTTTCAATCAAAGAACTGTAATACCATAGTGAAATGAATCTTATATGAGGTTTATGGACACTTAAAAGTTTTCGAAGAGTTATAACACGGATTAAATGCTTTTTGCACAACATTTCTGGGTTTTGAAAGTGAAATGTGTGGGAGTCCATTAACTAGAGCCAGTAATTTTGAGTATGCTCCTCGGGAGTCAGAAATGCCAGGTCAAATGAGTAACCTCATAAAACAAATTGGTAGTGAGATTGGGCAGTCAATCAGAGAAAGTATGATGAGAAATGAATTTCCAAATTATCCATCTGCTAAGAAGTCTCAAGAATGTGTCAGTGGTCATGTGATTGATCAAAcaaatcatttatttgtttgatcaAACAAATCATCTGTCATTGATGCATCGAAAATGAGCTTGATCCTGAAAGCTGATGGCAGCACCGCCACACTTTGAATATCTATCTGAATCATCTCCTCTAATCATGGAATGGGAAGACATGATGAGGGTATATTTGAAAAAACTGGATGTGACTGATTCTGATTGATGAGATAATGAACAGAGTAATGGTGCGGGCCAGAGATGTAATGAAAGTATGGCTGCGCAATGGTACAACGACTCCTACTGTTGACTCTGTCTTTTCCGGGACCAGAGCAGTTCAGGTATCCCGTTAGCTGTCTTCTATTCTGTGAGACCATATCCTAGAGAGAGTGCGTGGGATTACTGGATAAGACTAAATAAGGCAGCCGATGTTGCTGAGCAAAGTTTAAGAAGGGAAGGCAGAACTCTGGATAACAGGAGCAAAGAGTTAGCAGTTATGTTCATTCGCAACTGTCCTGACAGAGAGTTAGCTTTTGTTTTCAAGTGTAAACCTGTACAGTCATGGACCGCATCAGAGGTACAAGAGCAACTTGAGTTGTTGAGAGAACGGAAGTTGTCCAATCAAGCTGTCAAACAATTCGCCACAGTTGTCTCGGAGCCATAAGTTGATGTGATTCCCTTGCCTTCTAAGTCTGAACAGGGTGCAGGCGTGAATGATGAGAATGCATTGGGCAAAGTATTGACTTTGCTGGAAAAAGCGTTAGTGTGCAACACTCAGTCTATGCGGGGCCCTTGGTCTAAACAAACTGCGCCTAGGATTCGGGAATGCAGACTGTGTCAAAGCAGTGAGCACAGCACGACTGCTCACTGTCGAGTGTATAACTTGTGTTTCAAGTGCTTTGCAGCTGGACACGTGAGCTACAACTGTGACAAAACTACGTCCAGGCTGGGCTCCAGTTGGCTAGATGAAGTCACGCCACAGGGAAACTAGACAGCTCCCTTTGGGCAGAGGACGAGGTGGGGCTGTGTAGTAATTCCTCTGGTGAGACTGATATTGAATCTGTTTATTCCTTCTTCTGTGAAAGTGTtggcaaaacaaaaactgtaatttttcaGAGCAGCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU403973 False 349 lncRNA 0.30 2 9557697 9565526
XR_003403660.2 True 2276 lncRNA 0.43 3 9557738 9560373

Neighbor

gene id symbol gene type direction distance location
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776 coding upstream 241746 9263761 ~ 9315951 (+)
tfpi2 NA coding upstream 302218 9252106 ~ 9255479 (+)
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding upstream 504367 9034462 ~ 9053330 (+)
dlx5a dlx5,dlx5a,LOC107670186,LOC106570474 coding upstream 683255 8872595 ~ 8874442 (+)
chrac1 chrac1,LOC107591666,LOC107580926,LOC107722130 coding upstream 714579 8839251 ~ 8843118 (+)
LOC113536235 NA coding downstream 15389 9580915 ~ 9594532 (+)
efcab1 efcab1 coding downstream 32043 9597569 ~ 9600349 (+)
pex1 pex1 coding downstream 38945 9604471 ~ 9618025 (+)
poc1bl LOC108257092,LOC103026965,LOC108425761,LOC102236136 coding downstream 196129 9761655 ~ 9779711 (+)
galnt12 galnt12,LOC108425758,LOC107724331,LOC107670286 coding downstream 216689 9782215 ~ 9801084 (+)
G340687 NA non-coding upstream 310649 9246479 ~ 9247048 (+)
LOC113536151 NA non-coding upstream 376483 9174943 ~ 9181214 (+)
G340592 col1a2,LOC107722140,LOC107667770,LOC107731699,LOC107669816 non-coding upstream 380563 9157458 ~ 9177134 (+)
G340596 NA non-coding upstream 409404 9147811 ~ 9148293 (+)
G340597 NA non-coding upstream 416552 9140439 ~ 9141145 (+)
G340967 NA non-coding downstream 62262 9627788 ~ 9669228 (+)
G341038 NA non-coding downstream 163402 9728928 ~ 9730969 (+)
G341468 NA non-coding downstream 832684 10398210 ~ 10398409 (+)
G341469 NA non-coding downstream 833427 10398953 ~ 10399867 (+)
G341449 NA non-coding downstream 871878 10437404 ~ 10458143 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 328059 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 423518 9119014 ~ 9134179 (+)
sem1 NA other upstream 641851 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 1272493 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 1286198 8240697 ~ 8271499 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 628221 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 908957 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 1726765 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 1749004 11314530 ~ 11473323 (+)
sostdc1b LOC108257373 other downstream 2244583 11810109 ~ 11815273 (+)

Expression


Co-expression Network