G341038


Basic Information

Item Value
gene id G341038
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9728928 ~ 9730969 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU404103
gccaatttcCTCCCACCAGCCAGTTCActcctatcatacgacagctaccaactggggagagTGAAGGTTAACACTCGCTTCCtttgagacacatgaagccagtcaAACTTAGCTTTCACCTATTGCTGCGTGCTGCGTCACagtgcagcgtaacacacttggaggaaagtgtgtatccaccctcttccgcatacataagctcacagatgcccatgattggctagtgtcactgtgattgacaagggagagagtgtatgcccctcccacccagacagcattgccaattttgctcccttcgCTCCTCGCCATGGATATCTGTGGCATTGTCGGAGGggatacctttttttttttatttcaaataaaacagcATGTGAAGTAACTTACACTGGTGTTCTGCTTGGTGTTTTGTCATGGAGGTTGGGCTGAGGTGTCGCTTTGTTAGCAGACTGAGGAGTCCTGCACTTTGACATTCTCACTGGGGTGTTCTTTGGTAAGGTCCCCAGAAAATCCCTGTTCATCCCAATTTGCCTGGACGTCTTATTACAAGTGTGGCAGGTGGCCATCGACACAAAGTTAGCCATGTTTGCTGATGGGAACAGGTGGTGGAGCTGAAGAGTGATACAGGTTGTCTGTGACTTtagacacactgcacacactattATTATAAAGCACagtgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU404103 True 678 lncRNA 0.48 2 9728928 9730969

Neighbor

gene id symbol gene type direction distance location
pex1 pex1 coding upstream 110903 9604471 ~ 9618025 (+)
efcab1 efcab1 coding upstream 128579 9597569 ~ 9600349 (+)
LOC113536235 NA coding upstream 134396 9580915 ~ 9594532 (+)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776 coding upstream 412977 9263761 ~ 9315951 (+)
tfpi2 NA coding upstream 473449 9252106 ~ 9255479 (+)
poc1bl LOC108257092,LOC103026965,LOC108425761,LOC102236136 coding downstream 30686 9761655 ~ 9779711 (+)
galnt12 galnt12,LOC108425758,LOC107724331,LOC107670286 coding downstream 51246 9782215 ~ 9801084 (+)
LOC113536234 NA coding downstream 73067 9804036 ~ 9806104 (+)
gabbr2 gabbr2,LOC107670291,LOC107724329,LOC107710365 coding downstream 91734 9822703 ~ 10006532 (+)
abitram fam206a,LOC107710376,LOC107556369,LOC107556344 coding downstream 311455 10042424 ~ 10047887 (+)
G340967 NA non-coding upstream 59700 9627788 ~ 9669228 (+)
LOC113536134 NA non-coding upstream 163402 9557697 ~ 9565526 (+)
G340687 NA non-coding upstream 481880 9246479 ~ 9247048 (+)
LOC113536151 NA non-coding upstream 547714 9174943 ~ 9181214 (+)
G340592 col1a2,LOC107722140,LOC107667770,LOC107731699,LOC107669816 non-coding upstream 551794 9157458 ~ 9177134 (+)
G341468 NA non-coding downstream 667241 10398210 ~ 10398409 (+)
G341469 NA non-coding downstream 667984 10398953 ~ 10399867 (+)
G341449 NA non-coding downstream 706435 10437404 ~ 10458143 (+)
LOC117595845 NA non-coding downstream 715359 10446328 ~ 10447955 (+)
LOC113536353 NA non-coding downstream 718467 10449436 ~ 10454792 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 499290 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 594749 9119014 ~ 9134179 (+)
sem1 NA other upstream 813082 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 1443724 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 1457429 8240697 ~ 8271499 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 462778 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 743514 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 1561322 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 1583561 11314530 ~ 11473323 (+)
sostdc1b LOC108257373 other downstream 2079140 11810109 ~ 11815273 (+)

Expression


Co-expression Network