zgc:91910 (zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289)


Basic Information

Item Value
gene id zgc:91910
gene name zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 10193747 ~ 10197002 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU404499
CCCGAGCGGAAGTTGGATGTGCGTTATCCGCTCTCCTCCTCGTCGTCCCTTCGACAGGCTCGCCTTCTGAAACGCCAAGGCAAAGGCAATGGCTCGTGGGCAGCAGAAGATTCAGTCGCAGCAGAAGAACGCCAAAAAGGCAGCAGAGAAGAAAAAGTCACAGGGAGCAGATCAGAAAACAGCTGCCAAAGCAGCACTCGTCCACACATGTCCTGTCTGCAGGACACAGATGCCAGACCCCAAGACTTTCAAGCAGCATTTTGAGAGTAAACACCCCAAGTCTCCTATGCCCCCTGAGCTGGTAGATGTGCAGGCATAAACGTCTTTAGGAGCTACCAGTATCTGCACCTGGGACCCTGGGGAGAAATGATGCGATTCAGCTTGGCCAACTGATTCAACTCCTAGAAACAGACTCTGGATATGATGTGACAGGAGACTTAATGATGGACTAAAGCACACCAGCACcctttgattttatatttttatatgtattacCCTTCGTTTGGGCATACCATCAGTTTTAGTGTGCCGTAACAGCCTCATTATCACCTTCTGTCAAAACCTACAGTGTTTATCCCTCTCTCTTGTTGCgcattttcactttaaaattcatattaacACAGATGCATAAGTGTTCTTTGGTGCATACAACTCAGTAATGCTCTGTAAACATGAGCCATAATAGGAATTGCATCACTGTGTGAATTAACAATATTGGCCAGGATTGTGATTGGATTAGATTAATTCAACTGGGTGAAAAATATTCTCAGAGATAAACAAATGTTCTTGTAAAGTACTTCGGGTGTTGAATAGAGCCTCTGAAATTGCTTAATGTGTGcttaattttcaattttttgcTAAGGTTTTCAATAAATGTGTAAGCATATAGTCACTATGTGTCATTGTGATCACCTCAGAGCTGTGTAGTGGTGCGTTTGGAATAACTTGCTGATTAGGGGAATTAATTAGAGCTGGTACGTGTACAAATGTGTAAAGCAGTTTTGACTTCAGAATAAATTATTGAATAGAGACATAAAGTTTCACACCCATCACCAAAACATCTGCCTGAAATTGATGAATGCTGATCTTTATTGTTCATATGCTTTATGGCACAATTTGTAGGAGCACATTATCTCCACCAGACCTGCTGTCCTCatgcaaatgtgaaaaatggATGTTAAGCTGTGGTTGTCC
>XM_026929413.2
AAGATAAAAGACTTGTATTATGTCGAGCTCCCGAGCGGAAGTTGGATGTGCGTTATCCGCTCTCCTCCTCGTCGTCCCTTCGACAGGCTCGCCTTCTGAAACGCCAAGGCAAAGGCAATGGCTCGTGGGCAGCAGAAGATTCAGTCGCAGCAGAAGAACGCCAAAAAGGCAGCAGAGAAGAAAAAGTCACAGGGAGCAGATCAGAAAACAGCTGCCAAAGCAGCACTCGTCCACACATGTCCTGTCTGCAGGACACAGATGCCAGACCCCAAGACTTTCAAGCAGCATTTTGAGAGTAAACACCCCAAGTCTCCTATGCCCCCTGAGCTGGTAGATGTGCAGGCATAAACGTCTTTAGGAGCTACCAGTATCTGCACCTGGGACCCTGGGGAGAAATGATGCGATTCAGCTTGGCCAACTGATTCAACTCCTAGAAACAGACTCTGGATATGATGTGACAGGAGACTTAATGATGGACTAAAGCACACCAGCACcctttgattttatatttttatatgtattacCCTTCGTTTGGGCATACCATCAGTTTTAGTGTGCCGTAACAGCCTCATTATCACCTTCTGTCAAAACCTACAGTGTTTATCCCTCTCTCTTGTTGCgcattttcactttaaaattcatattaacACAGATGCATAAGTGTTCTTTGGTGCATACAACTCAGTAATGCTCTGTAAACATGAGCCATAATAGGAATTGCATCACTGTGTGAATTAACAATATTGGCCAGGATTGTGATTGGATTAGATTAATTCAACTGGGTGAAAAATATTCTCAGAGATAAACAAATGTTCTTGTAAAGTACTTCGGGTGTTGAATAGAGCCTCTGAAATTGCTTAATGTGTGcttaattttcaattttttgcTAAGGTTTTCAATAAATGTGTAAGCATATAGTCA

Function

NR:

description
PREDICTED: zinc finger protein 706-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU404499 True 1194 lncRNA 0.42 4 10193776 10197002
XM_026929413.2 False 921 mRNA 0.43 4 10193747 10196700

Neighbor

gene id symbol gene type direction distance location
wdyhv1 wdyhv1 coding upstream 3431 10187693 ~ 10190316 (+)
ccn4a wisp1,LOC108425715,LOC107670277,LOC107724346 coding upstream 39556 10147649 ~ 10154191 (+)
abitram fam206a,LOC107710376,LOC107556369,LOC107556344 coding upstream 145860 10042424 ~ 10047887 (+)
gabbr2 gabbr2,LOC107670291,LOC107724329,LOC107710365 coding upstream 187215 9822703 ~ 10006532 (+)
LOC113536234 NA coding upstream 387643 9804036 ~ 9806104 (+)
angpt2b LOC108256759,LOC108425532 coding downstream 400414 10597416 ~ 10620173 (+)
LOC113536281 NA coding downstream 860103 11057105 ~ 11078437 (+)
cx30.9 NA coding downstream 1078824 11275826 ~ 11283228 (+)
pef1 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding downstream 1087531 11284533 ~ 11291582 (+)
fam49al fam49a,LOC108257369,LOC103035846,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC101166565 coding downstream 1344501 11541503 ~ 11569943 (+)
G341038 NA non-coding upstream 462778 9728928 ~ 9730969 (+)
G340967 NA non-coding upstream 524519 9627788 ~ 9669228 (+)
LOC113536134 NA non-coding upstream 628221 9557697 ~ 9565526 (+)
G340687 NA non-coding upstream 946699 9246479 ~ 9247048 (+)
LOC113536151 NA non-coding upstream 1012533 9174943 ~ 9181214 (+)
G341468 NA non-coding downstream 201208 10398210 ~ 10398409 (+)
G341469 NA non-coding downstream 201951 10398953 ~ 10399867 (+)
G341449 NA non-coding downstream 240402 10437404 ~ 10458143 (+)
LOC117595845 NA non-coding downstream 249326 10446328 ~ 10447955 (+)
LOC113536353 NA non-coding downstream 252434 10449436 ~ 10454792 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 964109 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 1059568 9119014 ~ 9134179 (+)
sem1 NA other upstream 1277901 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 1908543 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 1922248 8240697 ~ 8271499 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 277481 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 1095289 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 1117528 11314530 ~ 11473323 (+)
sostdc1b LOC108257373 other downstream 1613107 11810109 ~ 11815273 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 2495005 12692007 ~ 12695512 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location