smim12 (smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281)


Basic Information

Item Value
gene id smim12
gene name smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11292291 ~ 11294356 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU405030
ACCTAAAAGCAGGAAGTGGATTTTTGATGGTACTGCCTGAAAGAATGAAGGAATTGCTCTGAAGCAACACCAGTAGGTGAAGTAATTCACGagcGTTTTGCATTTGGGTCGTTTGTGCCACCATGTGGCCGGTGGTGTGGACCGCTATGCGCACCTATGCGCCCTACGTGACCTTCCCTGTGGCCTTCGTAGTGGGCGCGGTGGGCTACCACCTGGAGTGGTTCATCCGGGGACCTCCCAAAACCCCGCGAGAAGAGAAGGGTATCGCGGAGCTTCGCGAGGACCGGAAACTCGAGGAGCTGGTGGGCCGAGACAGCACGCAAGTCCTCAGTCTGAAGGACAAACTGGAGTTCACCCCCAGGGCAGTACTGGAAAAGAACCGGCCTGAGAAGAGCTAGCTAGAGCCATGTCAGATTTCCCAGAGGGATCACATCACTCATGCTAGCTTATATGCTGTAGAACATATCATTGTGTACAACATGAGTTCCTGATTCTACATCACTCTACGATCCAACACATCACAGGTTTCCTTGCACATTTGAGTGATTTTTCCTTGCTCTAACATACCTGATCCAGTAATCAGCTACTTAACAGGCTTTCCTGAAttaaagtgggtgtgttagagcaaggAAAGCACTAAACTGTCCAGGACAGGGGTGTGCAGTCTTATctgcaaagggccagtgtgggtgcaggttttcattccaatcaagcaggaacCACTACTGATTCCACCTGATTAATCagctgatcttggctttcaatagactcgGGTCTGGCTTCTGCttagttggaatgaaaaccttcACCCACCCTGGCCCTTTCCAGATAAGACTGGACACTCCTGGTCCACGACAAGGACTGCGAGCCTGTGCCTGGCATGATTATTCCCTCTTCCTTAACGCTCACTCACTGGAAAAAGACTTGTGAATGTACTTTGTGGCTTAATGTTCAAGTTCCTCAGGCACATGGACACATGACTGTTTATCCGACATTGGAGAAACATTCAGAAGCTTCTGTATATCTCCATTTTCACTGATTATCATAAGACTGCGCTTGAAAGAATGGCAAGAATTGCTTAGATTAAATGTTTTGTGAGAAGTGCCCTTATTACTGTCCTGTATTAGTGAgagcaaacaataaaacatcacTTTGCCCCATTCGTCACTTCTGCCCATGCAAGAACATGATACATCACCTCATTCTAGaagttgtgtgtgaaagcttTAGCCATCAACTGCGACTTTATTCTAGTGTTCACATATTAGagtaaaggaaaactccaccctgg
>TU405031
ACCTAAAAGCAGGAAGTGGATTTTTGATGGTACTGCCTGAAAGAATGAAGGAATTGCTCTGAAGCAACACCAagcGTTTTGCATTTGGGTCGTTTGTGCCACCATGTGGCCGGTGGTGTGGACCGCTATGCGCACCTATGCGCCCTACGTGACCTTCCCTGTGGCCTTCGTAGTGGGCGCGGTGGGCTACCACCTGGAGTGGTTCATCCGGGGACCTCCCAAAACCCCGCGAGAAGAGAAGGGTATCGCGGAGCTTCGCGAGGACCGGAAACTCGAGGAGCTGGTGGGCCGAGACAGCACGCAAGTCCTCAGTCTGAAGGACAAACTGGAGTTCACCCCCAGGGCAGTACTGGAAAAGAACCGGCCTGAGAAGAGCTAGCTAGAGCCATGTCAGATTTCCCAGAGGGATCACATCACTCATGCTAGCTTATATGCTGTAGAACATATCATTGTGTACAACATGAGTTCCTGATTCTACATCACTCTACGATCCAACACATCACAGGTTTCCTTGCACATTTGAGTGATTTTTCCTTGCTCTAACATACCTGATCCAGTAATCAGCTACTTAACAGGCTTTCCTGAAttaaagtgggtgtgttagagcaaggAAAGCACTAAACTGTCCAGGACAGGGGTGTGCAGTCTTATctgcaaagggccagtgtgggtgcaggttttcattccaatcaagcaggaacCACTACTGATTCCACCTGATTAATCagctgatcttggctttcaatagactcgGGTCTGGCTTCTGCttagttggaatgaaaaccttcACCCACCCTGGCCCTTTCCAGATAAGACTGGACACTCCTGGTCCACGACAAGGACTGCGAGCCTGTGCCTGGCATGATTATTCCCTCTTCCTTAACGCTCACTCACTGGAAAAAGACTTGTGAATGTACTTTGTGGCTTAATGTTCAAGTTCCTCAGGCACATGGACACATGACTGTTTATCCGACATTGGAGAAACATTCAGAAGCTTCTGTATATCTCCATTTTCACTGATTATCATAAGACTGCGCTTGAAAGAATGGCAAGAATTGCTTAGATTAAATGTTTTGTGAGAAGTGCCCTTATTACTGTCCTGTATTAGTGAgagcaaacaataaaacatcacTTTGCCCCATTCGTCACTTCTGCCCATGCAAGAACATGATACATCACCTCATTCTAGaagttgtgtgtgaaagcttTAGCCATCAACTGCGACTTTATTCTAGTGTTCACATATTAGagtaaaggaaaactccaccctggaagacaataaatgtttattttgaaatatttctgatgggTTGAGTGATTTTGgtgctgtatttgtatttttcctGTGAGAAGATAGTGGTTAACTGCTGTGGCTTTGCATCAGATGAAGCAAGTGCTAACTCCTCCAACTGgcaccatcatcaccaacagcactgtgggtaatttaggaaactgttaaccaaagtgaataTAGGCCAAGATGTGGACgaaagaactaaaaaaaaaaaagtgaactcaGAATTTCCTTACAGGCTAAATCTTGGACATAATTGAAGATCACATGCTAATTATAAAGgttaatatgcaagttgttcagg
>XM_026929427.2
GATACGTCGCAATTACGTCACGATAGAGGCGGTACCTAAAAGCAGGAAGTGGATTTTTGATGGTACTGCCTGAAAGAATGAAGGAATTGCTCTGAAGCAACACCAGTAGGTGAAGTAATTCACGagcGTTTTGCATTTGGGTCGTTTGTGCCACCATGTGGCCGGTGGTGTGGACCGCTATGCGCACCTATGCGCCCTACGTGACCTTCCCTGTGGCCTTCGTAGTGGGCGCGGTGGGCTACCACCTGGAGTGGTTCATCCGGGGACCTCCCAAAACCCCGCGAGAAGAGAAGGGTATCGCGGAGCTTCGCGAGGACCGGAAACTCGAGGAGCTGGTGGGCCGAGACAGCACGCAAGTCCTCAGTCTGAAGGACAAACTGGAGTTCACCCCCAGGGCAGTACTGGAAAAGAACCGGCCTGAGAAGAGCTAGCTAGAGCCATGTCAGATTTCCCAGAGGGATCACATCACTCATGCTAGCTTATATGCTGTAGAACATATCATTGTGTACAACATGAGTTCCTGATTCTACATCACTCTACGATCCAACACATCACAGGTTTCCTTGCACATTTGAGTGATTTTTCCTTGCTCTAACATACCTGATCCAGTAATCAGCTACTTAACAGGCTTTCCTGAAttaaagtgggtgtgttagagcaaggAAAGCACTAAACTGTCCAGGACAGGGGTGTGCAGTCTTATctgcaaagggccagtgtgggtgcaggttttcattccaatcaagcaggaacCACTACTGATTCCACCTGATTAATCagctgatcttggctttcaatagactcgGGTCTGGCTTCTGCttagttggaatgaaaaccttcACCCACCCTGGCCCTTTCCAGATAAGACTGGACACTCCTGGTCCACGACAAGGACTGCGAGCCTGTGCCTGGCATGATTATTCCCTCTTCCTTAACGCTCACTCACTGGAAAAAGACTTGTGAATGTACTTTGTGGCTTAATGTTCAAGTTCCTCAGGCACATGGACACATGACTGTTTATCCGACATTGGAGAAACATTCAGAAGCTTCTGTATATCTCCATTTTCACTGATTATCATAAGACTGCGCTTGAAAGAATGGCAAGAATTGCTTAGATTAAATGTTTTGTGAGAAGTGCCCTTATTACTGTCCTGTATTAGTGAgagcaaacaataaaacatcacTTTGCCCCATTCGTCACTTCTGCCCATGCAAGAACATGATACATCACCTCATTCTAGaagttgtgtgtgaaagcttTAGCCATCAACTGCGACTTTATTCTAGTGTTCACATATTAGagtaaaggaaaactccaccctggaagacaataaatgtttattttgaaatatt
>XM_026929428.2
CGTCACGATAGAGGCGGTACCTAAAAGCAGGAAGTGGATTTTTGATGGTACTGCCTGAAAGAATGAAGGAATTGCTCTGAAGCAACACCAagcGTTTTGCATTTGGGTCGTTTGTGCCACCATGTGGCCGGTGGTGTGGACCGCTATGCGCACCTATGCGCCCTACGTGACCTTCCCTGTGGCCTTCGTAGTGGGCGCGGTGGGCTACCACCTGGAGTGGTTCATCCGGGGACCTCCCAAAACCCCGCGAGAAGAGAAGGGTATCGCGGAGCTTCGCGAGGACCGGAAACTCGAGGAGCTGGTGGGCCGAGACAGCACGCAAGTCCTCAGTCTGAAGGACAAACTGGAGTTCACCCCCAGGGCAGTACTGGAAAAGAACCGGCCTGAGAAGAGCTAGCTAGAGCCATGTCAGATTTCCCAGAGGGATCACATCACTCATGCTAGCTTATATGCTGTAGAACATATCATTGTGTACAACATGAGTTCCTGATTCTACATCACTCTACGATCCAACACATCACAGGTTTCCTTGCACATTTGAGTGATTTTTCCTTGCTCTAACATACCTGATCCAGTAATCAGCTACTTAACAGGCTTTCCTGAAttaaagtgggtgtgttagagcaaggAAAGCACTAAACTGTCCAGGACAGGGGTGTGCAGTCTTATctgcaaagggccagtgtgggtgcaggttttcattccaatcaagcaggaacCACTACTGATTCCACCTGATTAATCagctgatcttggctttcaatagactcgGGTCTGGCTTCTGCttagttggaatgaaaaccttcACCCACCCTGGCCCTTTCCAGATAAGACTGGACACTCCTGGTCCACGACAAGGACTGCGAGCCTGTGCCTGGCATGATTATTCCCTCTTCCTTAACGCTCACTCACTGGAAAAAGACTTGTGAATGTACTTTGTGGCTTAATGTTCAAGTTCCTCAGGCACATGGACACATGACTGTTTATCCGACATTGGAGAAACATTCAGAAGCTTCTGTATATCTCCATTTTCACTGATTATCATAAGACTGCGCTTGAAAGAATGGCAAGAATTGCTTAGATTAAATGTTTTGTGAGAAGTGCCCTTATTACTGTCCTGTATTAGTGAgagcaaacaataaaacatcacTTTGCCCCATTCGTCACTTCTGCCCATGCAAGAACATGATACATCACCTCATTCTAGaagttgtgtgtgaaagcttTAGCCATCAACTGCGACTTTATTCTAGTGTTCACATATTAGagtaaaggaaaactccaccctggaagacaataaatgtttattttgaaatatt
>XM_034298335.1
TACATGTAGTTGTGCCTTAACTAAACGTAATTTAATGAGTTGTATGAGGTATATTTGCGCTGTCACGCCATTCCTACAAAACGTTATTAGagcGTTTTGCATTTGGGTCGTTTGTGCCACCATGTGGCCGGTGGTGTGGACCGCTATGCGCACCTATGCGCCCTACGTGACCTTCCCTGTGGCCTTCGTAGTGGGCGCGGTGGGCTACCACCTGGAGTGGTTCATCCGGGGACCTCCCAAAACCCCGCGAGAAGAGAAGGGTATCGCGGAGCTTCGCGAGGACCGGAAACTCGAGGAGCTGGTGGGCCGAGACAGCACGCAAGTCCTCAGTCTGAAGGACAAACTGGAGTTCACCCCCAGGGCAGTACTGGAAAAGAACCGGCCTGAGAAGAGCTAGCTAGAGCCATGTCAGATTTCCCAGAGGGATCACATCACTCATGCTAGCTTATATGCTGTAGAACATATCATTGTGTACAACATGAGTTCCTGATTCTACATCACTCTACGATCCAACACATCACAGGTTTCCTTGCACATTTGAGTGATTTTTCCTTGCTCTAACATACCTGATCCAGTAATCAGCTACTTAACAGGCTTTCCTGAAttaaagtgggtgtgttagagcaaggAAAGCACTAAACTGTCCAGGACAGGGGTGTGCAGTCTTATctgcaaagggccagtgtgggtgcaggttttcattccaatcaagcaggaacCACTACTGATTCCACCTGATTAATCagctgatcttggctttcaatagactcgGGTCTGGCTTCTGCttagttggaatgaaaaccttcACCCACCCTGGCCCTTTCCAGATAAGACTGGACACTCCTGGTCCACGACAAGGACTGCGAGCCTGTGCCTGGCATGATTATTCCCTCTTCCTTAACGCTCACTCACTGGAAAAAGACTTGTGAATGTACTTTGTGGCTTAATGTTCAAGTTCCTCAGGCACATGGACACATGACTGTTTATCCGACATTGGAGAAACATTCAGAAGCTTCTGTATATCTCCATTTTCACTGATTATCATAAGACTGCGCTTGAAAGAATGGCAAGAATTGCTTAGATTAAATGTTTTGTGAGAAGTGCCCTTATTACTGTCCTGTATTAGTGAgagcaaacaataaaacatcacTTTGCCCCATTCGTCACTTCTGCCCATGCAAGAACATGATACATCACCTCATTCTAGaagttgtgtgtgaaagcttTAGCCATCAACTGCGACTTTATTCTAGTGTTCACATATTAGagtaaaggaaaactccaccctggaagacaataaatgtttattttgaaatatt

Function

symbol description
smim12 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM12 (small integral membrane protein 12).

NR:

description
small integral membrane protein 12

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405030 False 1291 TUCP 0.47 2 11292324 11294030
TU405031 True 1598 TUCP 0.45 2 11292324 11294356
XM_026929427.2 False 1353 mRNA 0.47 2 11292291 11294059
XM_026929428.2 False 1319 mRNA 0.47 2 11292306 11294059
XM_034298335.1 False 1319 mRNA 0.46 2 11292454 11294059

Neighbor

gene id symbol gene type direction distance location
pef1 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding upstream 709 11284533 ~ 11291582 (+)
cx30.9 NA coding upstream 9063 11275826 ~ 11283228 (+)
LOC113536281 NA coding upstream 213854 11057105 ~ 11078437 (+)
angpt2b LOC108256759,LOC108425532 coding upstream 672118 10597416 ~ 10620173 (+)
wdyhv1 wdyhv1 coding upstream 1101975 10187693 ~ 10190316 (+)
fam49al fam49a,LOC108257369,LOC103035846,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC101166565 coding downstream 247147 11541503 ~ 11569943 (+)
mfsd2ab mfsd2a,LOC107687081,LOC107724351,LOC107568806,LOC107584275,LOC107709268,LOC107691531 coding downstream 396081 11690437 ~ 11705117 (+)
yars1 yars,LOC107687080,LOC107691530,LOC107724337,LOC107709269 coding downstream 412302 11706658 ~ 11715821 (+)
sync sync coding downstream 474614 11768970 ~ 11773563 (+)
LOC113536236 LOC108257374,LOC107702070,LOC107584324,LOC107724274,LOC106588710 coding downstream 503700 11798056 ~ 11806421 (+)
G341449 NA non-coding upstream 834148 10437404 ~ 10458143 (+)
LOC113536353 NA non-coding upstream 837499 10449436 ~ 10454792 (+)
G341445 NA non-coding upstream 840729 10450465 ~ 10451562 (+)
LOC117595845 NA non-coding upstream 844336 10446328 ~ 10447955 (+)
G341469 NA non-coding upstream 892424 10398953 ~ 10399867 (+)
G341894 NA non-coding downstream 24399 11318755 ~ 11319077 (+)
G341890 NA non-coding downstream 90680 11385036 ~ 11473979 (+)
G342067 NA non-coding downstream 289286 11583642 ~ 11583855 (+)
G342079 NA non-coding downstream 294662 11589018 ~ 11589225 (+)
G342190 bzw2,LOC107724358,LOC107568798 non-coding downstream 487910 11782266 ~ 11784980 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 810321 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 1095289 10193747 ~ 10197002 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 2062653 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 2158112 9119014 ~ 9134179 (+)
sem1 NA other upstream 2376445 8912928 ~ 8915846 (+)
dlgap3 dlgap3 other downstream 20174 11314530 ~ 11473323 (+)
sostdc1b LOC108257373 other downstream 515753 11810109 ~ 11815273 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 1397651 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 1491481 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 1610267 12904623 ~ 12954725 (+)

Expression


Co-expression Network