G341890


Basic Information

Item Value
gene id G341890
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11385036 ~ 11473979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU405042
tgttTTACTAGCTTtctgaggaccttccattgctataattattaatgtagctaattaaAGCTATgtctacacctaaacctaaccctaaccttgacctcagtaaccaaaaggaaaaattttgtcttttttttttttttttttttttTTTTTTTGCAGGGAAGGGGGATGAGGACCAACTGGCAAACACTGGATGAGGAAAACAGAAATAGGaatgaacaataaaacacagttgCCATGATCCAAGATAGATCAGTCCAAATCTACTATGTAAAATCAATAATGTCCTCCACTAAGCTTTTTCCACCTCAGTACTTAAAAACAGCAAACATCCTACATGACAAGATCTGGCTTAGTCTATGATCCCTTTGAGATTCACTCCTGTGTCTCCATGCTTtcatcctctccttctcctccctcTTCCAAagcctcctcttcttcttctttacgCTCTGGAGGTTTCTCATATGCTTTCTCAGACGGGGTGACAATCACACCATCCCATGTGGACATCTCCGTAGC
>TU405043
acttttttttttttTTTTTTTGCAGGGAAGGGGGATGAGGACCAACTGGCAAACACTGGATGAGGAAAACAGAAATAGGaatgaacaataaaacacagttgCCATGATCCAAGATAGATCAGTCCAAATCTACTATGTAAAATCAATAATGTCCTCCACTAAGCTTTTTCCACCTCAGTACTTAAAAACAGCAAACATCCTACATGACAAGATCTGGCTTAGTCTATGATCCCTTTGAGATTCACTCCTGTGTCTCCATGCTTtcatcctctccttctcctccctcTTCCAAagcctcctcttcttcttctttacgCTCTGGAGGTTTCTCATATGCTTTCTCAGACGGGGTGACAATCACACCATCCCATGTGGACATCTCCGTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405042 True 519 lncRNA 0.39 2 11459087 11473979
TU405043 False 388 lncRNA 0.42 2 11385036 11473979

Neighbor

gene id symbol gene type direction distance location
pef1 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding upstream 93454 11284533 ~ 11291582 (+)
cx30.9 NA coding upstream 101808 11275826 ~ 11283228 (+)
LOC113536281 NA coding upstream 306599 11057105 ~ 11078437 (+)
angpt2b LOC108256759,LOC108425532 coding upstream 764863 10597416 ~ 10620173 (+)
wdyhv1 wdyhv1 coding upstream 1194720 10187693 ~ 10190316 (+)
fam49al fam49a,LOC108257369,LOC103035846,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC101166565 coding downstream 67524 11541503 ~ 11569943 (+)
mfsd2ab mfsd2a,LOC107687081,LOC107724351,LOC107568806,LOC107584275,LOC107709268,LOC107691531 coding downstream 216458 11690437 ~ 11705117 (+)
yars1 yars,LOC107687080,LOC107691530,LOC107724337,LOC107709269 coding downstream 232679 11706658 ~ 11715821 (+)
sync sync coding downstream 294991 11768970 ~ 11773563 (+)
LOC113536236 LOC108257374,LOC107702070,LOC107584324,LOC107724274,LOC106588710 coding downstream 324077 11798056 ~ 11806421 (+)
G341894 NA non-coding upstream 65959 11318755 ~ 11319077 (+)
G341449 NA non-coding upstream 926893 10437404 ~ 10458143 (+)
LOC113536353 NA non-coding upstream 930244 10449436 ~ 10454792 (+)
G341445 NA non-coding upstream 933474 10450465 ~ 10451562 (+)
LOC117595845 NA non-coding upstream 937081 10446328 ~ 10447955 (+)
G342067 NA non-coding downstream 109663 11583642 ~ 11583855 (+)
G342079 NA non-coding downstream 115039 11589018 ~ 11589225 (+)
G342190 bzw2,LOC107724358,LOC107568798 non-coding downstream 308287 11782266 ~ 11784980 (+)
G342189 bzw2,LOC107709265,LOC107724358,LOC107691535,LOC107702135 non-coding downstream 313094 11787073 ~ 11797795 (+)
G342208 NA non-coding downstream 389267 11863246 ~ 11930057 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 90680 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 903066 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 1188034 10193747 ~ 10197002 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 2155398 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 2250857 9119014 ~ 9134179 (+)
sostdc1b LOC108257373 other downstream 336130 11810109 ~ 11815273 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 1218028 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 1311858 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 1430644 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 1603191 13077170 ~ 13081229 (+)

Expression


Co-expression Network