G342189 (bzw2,LOC107709265,LOC107724358,LOC107691535,LOC107702135)


Basic Information

Item Value
gene id G342189
gene name bzw2,LOC107709265,LOC107724358,LOC107691535,LOC107702135
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11787073 ~ 11797795 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU405369
TTTCTGTTACCATGTCCAATTCTCAAGGTCATGAATGTTTAGAGCAAACACCTTCACAGATCTGCTGATAATCTCAAATTTAgcatgtttacaatattaaatatcacCCATTATTGAAACCACAGgcaatctctcacacacaaacatacaaggAGTTTCTTATCCAGGCTGGCCTTTCTCAGGGCAGAAGTTACTGCATTGGGATCTTTTTCAGCTATCCATGCCTTGAACAGCTTCACTGCAAAGGAAGCAGCGATCCCTTCTTTCACTATGTTATCACTGAAGAGGCTGGTAAGGATGGCAGGCGACAGTGTGCCAGTGGCCAGCAGGATGCCTGtcagcatggccagttttgcctGCTCAGACTCACTGAAGGCTTTCAGAAAGAGTAGCAGCtttttatttcctcctcAAAAGCCTTCTCCAGATATTTGTATCTCCTGATAAGTTTATTGAAAACCTGAGCATAGCTGCGAGCAGCAGTGTGATTTTCCTCTGTAGTGAACACACAGTGGACAGTCACCTTGGTCTTGTCCCCATCATCAATGCGTGTTCCCCCGGGGGCAAGCATGCTCCCAGCGATGAGGATGTCAAACAGAGTGTCAGCATAGCGAcggtagtccagtctcgaaccCGTGACATCCAGAAACTTGGCTACAGCATCAAGATCACCCCCAGCTTCGTTGAGGCCCTGAATGATTGTGTCTCGGAAAACCGTGGGCTCAAACTTCTCCTTTTCATCCCTTTTCCTGGTCTTAAACCGCTGGCCTGTAAGCACTGGCTTCTGTTGCTTACCGGTATTCATAAAAgtcCTGGCAGTGGGTTTAACCTTGTGAAGAGTTTGAACACCGCTTGAGTACCGCTAAGTCTCAC
>TU405370
ggtcagcaacaatactcaaataggctgtggcattcaagcgatgatcaTTATTAACGGCCCCAGAGTGTGTcaggaaaacattccccacaccatcagACCACCTCCACGATCCTGGattgttgacacaaggcaggctgagtccatggattcatgctgttggtgacaaattctgaccctaccatctgtgtgcctcagcagaaatcgagagtcatcagaccaggctacgtttttccagtcttcagctgtctagttttggtgagcctgtgcccagtgcagcctcagctttctgttcctaACTGACAaaagtggaacctgacatggtcttctgctgttcatTTGCCTCAGAGtctgacatgttgtgcattctgacatgcttttctgctcaccacaattgtacagggtAGTTATttgttactgtagcctttctgtcagcttgaaccagtctggccttctCCGTTGActtctctctcatcaacaaggcgtttccatccacagaactgctttTCACTGGacgttttttctttattgcaccattctaagtaaactctagagactgttgtgtgtgaaaatcccaggagatgagaagttatagaaatattcaaaccagcccatctggcaccaacaatcatgccacggtcaaaatcactgagttcacatttttccccattctgatagctgatttgcatgattttatgataGCTTGatctgcctgattttatgcactgcactgctgccacatgattgactgattagataattgtatgaatgagtagatgtacaggtgtacctaataaagtgctaagtgagtgtatgtaatcctaaccataaaataataaaagtgcttATTGAAGAGTAATGAATGTCAAATCAAATGTGAAATCTATCCAATATGCTGATGTTTTGCTGCGGAGCGAGAACCTCTTGACGGAACTGGTAAATGCTGACATTCTCAGCATCACCAAAACTGTAAGCCCCAAGCCctaaccctacacacacacacttaaaacctaatgtataatattttcCACAAACCTTCTTTCACTATGTTATCACTGAAGAGGCTGGTAAGGATGGCAGGCGACAGTGTGCCAGTGGCCAGCAGGATGCCTGtcagcatggccagttttgcctGCTCAGACTCACTGAAGGCTTTCAGAAAGAGTAGCAGcttttttatttcctcctcAAAAGCCTTCTCCAGATATTTGTATCTCCTGATAAGTTTATTGAAAACCTGAGCATAGCTGCGAGCAGCAGTGTGATTTTCCTCTGTAGTGAACACACAGTGGACAGTCACCTTGGTCTTGTCCCCATCATCAATGCGTGTTCCCCCGGGGGCAAGCATGCTCCCAGCGATGAGGATGTCAAACAGAGTGTCAGCATAGCGAcggtagtccagtctcgaaccCGTGACATCCAGAAACTTGGCTACAGCATCAAGATCACCCCCAGCTTCGTTGAGGCCCTGAATGATTGTGTCTCGGAAAACCGTGGGCTCAAACTTCTCCTTTTCATCCCTTTTCCTGGTCTTAAACCGCTGGCCTGTAAGCACTGGCTTCTGTTGCTTACCGGTATTCATAAAAgtcctgaaaagaaaaataaatgttacattaacTGAACtgggcagatgcttttatccagagagacttacagaagtgcttttttATCTACTTGGAAAACATTCGCATGTTAGTGCAAACCGGACCAAATGATACCAGCAGGCTGAAATACTTCCAGAACCAGGAGGCTGAGAACATTAAAGGAATAATCCAGAGGTTTTCAACCCAATTTCCATCTCCAGCCTCTGTAGCATATATGTGATTATTAAGGACCAGCATTTTGACATCTATTTATACAAAACTCACTTAACCTTGGAAGTCCATGGGCAGTTGCCTGGGCATTCATTATATGCAAAACACATTTCTGGAGGAAGTTTTAATGTCTTCTTCCGTCTAAGGTAAATTAAGTTCTAAATTCATATACTTCATCCTTTCATTCATAATTTGTGCTTATGTGTAACCAATGTAGCACAAAGTAAATACAGAAGTTCCTCAATCTcacagaaaccacaaaatgctcaggaaagcatttttttttaaattgtattgcTCTCACATGCTTGTGTCACATGTGTGAATTCTATTTTTCTATGtctattttaaacatatataactgcccttagacttttattagcattattaaacTTGAG

Function

symbol description
bzw2 Predicted to act upstream of or within cell differentiation and nervous system development. Predicted to be active in cytoplasm. Is expressed in myotome. Orthologous to human BZW2 (basic leucine zipper and W2 domains 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405369 False 873 lncRNA 0.47 7 11787073 11797795
TU405370 True 2209 lncRNA 0.42 5 11787746 11792642

Neighbor

gene id symbol gene type direction distance location
sync sync coding upstream 13510 11768970 ~ 11773563 (+)
yars1 yars,LOC107687080,LOC107691530,LOC107724337,LOC107709269 coding upstream 71252 11706658 ~ 11715821 (+)
mfsd2ab mfsd2a,LOC107687081,LOC107724351,LOC107568806,LOC107584275,LOC107709268,LOC107691531 coding upstream 81956 11690437 ~ 11705117 (+)
fam49al fam49a,LOC108257369,LOC103035846,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC101166565 coding upstream 217130 11541503 ~ 11569943 (+)
pef1 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding upstream 495491 11284533 ~ 11291582 (+)
LOC113536236 LOC108257374,LOC107702070,LOC107584324,LOC107724274,LOC106588710 coding downstream 261 11798056 ~ 11806421 (+)
meox2b LOC108256791,LOC107724325,LOC107584352,LOC107702081,LOC107696195,LOC107709256,LOC107568803 coding downstream 34795 11832590 ~ 11841066 (+)
LOC117595868 NA coding downstream 71420 11869215 ~ 11871010 (+)
si:ch211-57n23.4 si:ch211-57n23.4,LOC108256859,LOC108424704,LOC107593575,LOC107722127,LOC107731740,LOC107670070 coding downstream 149555 11947350 ~ 11968642 (+)
gatad2b gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107696601,LOC107591599 coding downstream 226099 12023894 ~ 12063869 (+)
G342190 bzw2,LOC107724358,LOC107568798 non-coding upstream 2093 11782266 ~ 11784980 (+)
G342079 NA non-coding upstream 197848 11589018 ~ 11589225 (+)
G342067 NA non-coding upstream 203218 11583642 ~ 11583855 (+)
G341890 NA non-coding upstream 313094 11385036 ~ 11473979 (+)
G341894 NA non-coding upstream 467996 11318755 ~ 11319077 (+)
G342208 NA non-coding downstream 65451 11863246 ~ 11930057 (+)
G342333 NA non-coding downstream 477951 12275746 ~ 12275952 (+)
G342496 NA non-coding downstream 589989 12387784 ~ 12388775 (+)
G342538 psmb4,psb4,LOC107593590,LOC107696528 non-coding downstream 658912 12456707 ~ 12460218 (+)
G342546 NA non-coding downstream 676549 12474344 ~ 12476263 (+)
dlgap3 dlgap3 other upstream 313750 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 492717 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 1305103 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 1590071 10193747 ~ 10197002 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 2557435 9224604 ~ 9229638 (+)
sostdc1b LOC108257373 other downstream 12314 11810109 ~ 11815273 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 894212 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 988042 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 1106828 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 1279375 13077170 ~ 13081229 (+)

Expression


Co-expression Network