G342190 (bzw2,LOC107724358,LOC107568798)


Basic Information

Item Value
gene id G342190
gene name bzw2,LOC107724358,LOC107568798
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11782266 ~ 11784980 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU405371
TGGGCTTTAAAAGGATTGtttattgataaataaaaaaatacaataaacacttCTGACCTTTCCTTGTATTATAttttcaagggaaaaaaaagaaaacctatAAACATCTAATCCCCACATCAGTAAAAAGTGAAATTATGGTTTTTTAGGTGTTTGAAGTGACATTTCAGCAAGAGATTATACAtataaaaacctttttattcataaaaatcagTCATACATACAAGGGAGTATAATTCAGCTGAATATATGAGAAGCTGATTCACAGAGTACCTGAACAGTAAAGTAAAGAATATGCGTCTTTTACTAAAAAGTGTGTCTATGGCTTCTCCACTGGTTGTGCTCGAGTGTCTAGGACTCTTCGACTACAGTGCACTAACAGGCCGGCCTCAGAGCAGTGTGTAGAGATCTTCAGTCATCCCGAAAGCTAATCTTCTCTCTCGGATTCAGACTCTTCTTCTGCATTCTGAAGCCACTCCACAAATTTCTTCATCTGCTCCAGAAAGACACTTTTCCCTTTGGCAGCATGGGCATCTTTGTACCATTTTAAGATGGCTTCCTCACTAAGGACGTCGGCTTTGTAGAACAGCACTACTATCTTGGAGAAGGATTTCATGAAGTGGATGTTGTCATAGCAGTACTCCTGAATCTTCAGTAGCAAGACCAGTTCAGATTGACCCTGAGTACTGAACACAGCCAGCAAAGGAGCGTAATGCTTAAGGTGTTTAAGGGCCTGCTCAGTAACCAGCTCTTCCTTCTTGTTCCACTCCACAGCGTTCATAAGGCAGGACCAGAGTAAGCCAATCACAGCCTGCTCCTGCAGGTCATTCCTCTTCATCTCCTCCTTCACATACACCACAATCTGAACATGACATTGAACATCTGGTCAAAAGTCTTACACACTTAAAAAGATGACCTGTTGAGATGCATATCAGGATAAGCAAAACTGTCACCAATCAGCTTACTGTGTGGTCTTAAGCATTAATACTGGTCGATTGTACATATTGATGAGCAAAGTGAACGTTTAG

Function

symbol description
bzw2 Predicted to act upstream of or within cell differentiation and nervous system development. Predicted to be active in cytoplasm. Is expressed in myotome. Orthologous to human BZW2 (basic leucine zipper and W2 domains 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405371 True 1028 lncRNA 0.40 5 11782266 11784980

Neighbor

gene id symbol gene type direction distance location
sync sync coding upstream 8703 11768970 ~ 11773563 (+)
yars1 yars,LOC107687080,LOC107691530,LOC107724337,LOC107709269 coding upstream 66445 11706658 ~ 11715821 (+)
mfsd2ab mfsd2a,LOC107687081,LOC107724351,LOC107568806,LOC107584275,LOC107709268,LOC107691531 coding upstream 77149 11690437 ~ 11705117 (+)
fam49al fam49a,LOC108257369,LOC103035846,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC101166565 coding upstream 212323 11541503 ~ 11569943 (+)
pef1 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding upstream 490684 11284533 ~ 11291582 (+)
LOC113536236 LOC108257374,LOC107702070,LOC107584324,LOC107724274,LOC106588710 coding downstream 13076 11798056 ~ 11806421 (+)
meox2b LOC108256791,LOC107724325,LOC107584352,LOC107702081,LOC107696195,LOC107709256,LOC107568803 coding downstream 47610 11832590 ~ 11841066 (+)
LOC117595868 NA coding downstream 84235 11869215 ~ 11871010 (+)
si:ch211-57n23.4 si:ch211-57n23.4,LOC108256859,LOC108424704,LOC107593575,LOC107722127,LOC107731740,LOC107670070 coding downstream 162370 11947350 ~ 11968642 (+)
gatad2b gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107696601,LOC107591599 coding downstream 238914 12023894 ~ 12063869 (+)
G342079 NA non-coding upstream 193041 11589018 ~ 11589225 (+)
G342067 NA non-coding upstream 198411 11583642 ~ 11583855 (+)
G341890 NA non-coding upstream 308287 11385036 ~ 11473979 (+)
G341894 NA non-coding upstream 463189 11318755 ~ 11319077 (+)
LOC113536353 NA non-coding upstream 1327474 10449436 ~ 10454792 (+)
G342189 bzw2,LOC107709265,LOC107724358,LOC107691535,LOC107702135 non-coding downstream 2093 11787073 ~ 11797795 (+)
G342208 NA non-coding downstream 78266 11863246 ~ 11930057 (+)
G342333 NA non-coding downstream 490766 12275746 ~ 12275952 (+)
G342496 NA non-coding downstream 602804 12387784 ~ 12388775 (+)
G342538 psmb4,psb4,LOC107593590,LOC107696528 non-coding downstream 671727 12456707 ~ 12460218 (+)
dlgap3 dlgap3 other upstream 308943 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 487910 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 1300296 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 1585264 10193747 ~ 10197002 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 2552628 9224604 ~ 9229638 (+)
sostdc1b LOC108257373 other downstream 25129 11810109 ~ 11815273 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 907027 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 1000857 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 1119643 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 1292190 13077170 ~ 13081229 (+)

Expression


Co-expression Network