G342208


Basic Information

Item Value
gene id G342208
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11863246 ~ 11930057 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU405392
ttttgtttttttttttgtttttttttttttacataatcttAGACATTAAGCAGTGTTTTCAAGTTTTAGTGTAGCAGTGTCTGCAACTGAAGTGTTTTTGTCAAACATATTAAAAGAGAATGCAAATATACAGCTGTGAGTAGCTTTCAGTTGTCTTATTTGCACTACTGCAAGTACATCAAACAATTCAGAAGTCTTGGGAGataatattggaaaataaagtGCATTACTCATGATTTCAAAACACCCTGGTTATTTAACAAACGTATGTAACGGAATCAAGCCTTTGAGCAAATATAATGGAACATGGTGATTGCAGGGAAAAGGGATAAGCACAGTGTACCCTCAGCTTGAGCATTAGTCTGAGGGAGGAGTTCTTAGATTGTACTCATGCAGCGATGTAGTGTTTCCCCCACAGTCCACATACTGATACATCTCCTGAGAGACCTGTTCAGCGTGGCCGAAATACACTGTGGTGACTGTTACCCTGCAAAGCAAGAGTCAAAACATGTGAAATGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405392 True 520 lncRNA 0.37 2 11863246 11930057

Neighbor

gene id symbol gene type direction distance location
meox2b LOC108256791,LOC107724325,LOC107584352,LOC107702081,LOC107696195,LOC107709256,LOC107568803 coding upstream 22180 11832590 ~ 11841066 (+)
LOC113536236 LOC108257374,LOC107702070,LOC107584324,LOC107724274,LOC106588710 coding upstream 56825 11798056 ~ 11806421 (+)
sync sync coding upstream 89683 11768970 ~ 11773563 (+)
yars1 yars,LOC107687080,LOC107691530,LOC107724337,LOC107709269 coding upstream 147425 11706658 ~ 11715821 (+)
mfsd2ab mfsd2a,LOC107687081,LOC107724351,LOC107568806,LOC107584275,LOC107709268,LOC107691531 coding upstream 158129 11690437 ~ 11705117 (+)
si:ch211-57n23.4 si:ch211-57n23.4,LOC108256859,LOC108424704,LOC107593575,LOC107722127,LOC107731740,LOC107670070 coding downstream 17293 11947350 ~ 11968642 (+)
gatad2b gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107696601,LOC107591599 coding downstream 93837 12023894 ~ 12063869 (+)
tinagl1 tinagl1,LOC107706169,LOC106588893,LOC107669690,LOC107593537,LOC107731519 coding downstream 152020 12082077 ~ 12108662 (+)
si:ch211-13c6.2 LOC108257116 coding downstream 295704 12225761 ~ 12237465 (+)
nfyc nfyc,LOC106588897,LOC107696595,LOC107591605 coding downstream 311199 12241256 ~ 12268864 (+)
G342189 bzw2,LOC107709265,LOC107724358,LOC107691535,LOC107702135 non-coding upstream 65451 11787073 ~ 11797795 (+)
G342190 bzw2,LOC107724358,LOC107568798 non-coding upstream 78266 11782266 ~ 11784980 (+)
G342079 NA non-coding upstream 274021 11589018 ~ 11589225 (+)
G342067 NA non-coding upstream 279391 11583642 ~ 11583855 (+)
G341890 NA non-coding upstream 389267 11385036 ~ 11473979 (+)
G342333 NA non-coding downstream 345689 12275746 ~ 12275952 (+)
G342496 NA non-coding downstream 457727 12387784 ~ 12388775 (+)
G342538 psmb4,psb4,LOC107593590,LOC107696528 non-coding downstream 526650 12456707 ~ 12460218 (+)
G342546 NA non-coding downstream 544287 12474344 ~ 12476263 (+)
G342589 NA non-coding downstream 564985 12495042 ~ 12544734 (+)
sostdc1b LOC108257373 other upstream 47973 11810109 ~ 11815273 (+)
dlgap3 dlgap3 other upstream 389923 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 568890 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 1381276 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 1666244 10193747 ~ 10197002 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 761950 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 855780 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 974566 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 1147113 13077170 ~ 13081229 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 2275664 14205721 ~ 14231844 (+)

Expression


Co-expression Network