G342538 (psmb4,psb4,LOC107593590,LOC107696528)


Basic Information

Item Value
gene id G342538
gene name psmb4,psb4,LOC107593590,LOC107696528
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 12456707 ~ 12460218 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU405780
CCAAGAATCTCAACTCCTTCTTCAGTCACAATGGCAATCTCGTGCTAAAGCAAAGCAGAAATAATATAACTTAGCATAATGTGTTCTGCAGAAACAAAGATTTAATGCAACTAGGTAAAATGTTTCTTGTGTATTTATCCATGAAGATCAGGAACAGTTCTCACTCTGTTGTAAGAACGAGCATCCCGGTAATACAGCACTTTGAGACATCGCTCTATCAGTGCCCGTGCCTCGTCCTTGGTAATTTCTACTTTGTTCTCAAGCACCTCTCTCATCAAGGGCTGGCCAAGTATGCACCAAATCCTGTGGCTACTGCTGGAGCTTCATATGCAACGCCTAGCTTGTCTACATAGCCCAGGAAGCTTTCTCCATTGTAAAATCCACCAATAACGACTGTGTTCCAAAGTGGGTTCATCCTGCTGCGACGGTTGTACATGACACGAGTAAGCCAGGAGTGGATGGCTTGTTTGATGTACTGGTAGTCTGCGTAGTCCCCTGAAGCTCCAAGGATGGTGGTGTCATTGACTTTCATGAGGCGGGAGATGTTGCGGAAACGGGCGAGTGAGCCATAAGAGCCGAGCATGTCAGCGGCGATGATGACTCCCCCTGTAAACTTCACCCCAAGTACTGATGTCCCCGTCACCATGGGATTAAGTGTATGTCGTATGGGTCCACATCCAGGAACCGTACTGTTACCGGTACctggaaatgaataaaactgtcCAGGTTTTGGTCCATTCTCCCAGAAATTTAACTTCAGTCCACTCGCCTCCATGTTGAAC

Function

symbol description
psmb4 Predicted to enable threonine-type endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMB4 (proteasome 20S subunit beta 4).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405780 True 782 lncRNA 0.47 5 12456707 12460218

Neighbor

gene id symbol gene type direction distance location
pogza NA coding upstream 850 12428895 ~ 12455857 (+)
anp32e anp32e,LOC107706176,LOC107669588 coding upstream 69513 12382783 ~ 12387194 (+)
jtb jtb coding upstream 109057 12340039 ~ 12347650 (+)
LOC113536355 kcnq4,LOC107593542,LOC107706174,LOC107591607 coding upstream 118409 12277881 ~ 12338298 (+)
nfyc nfyc,LOC106588897,LOC107696595,LOC107591605 coding upstream 187843 12241256 ~ 12268864 (+)
si:dkey-166k12.1 LOC108257079 coding downstream 2527 12462745 ~ 12472879 (+)
crtap crtap,LOC107670137,LOC107593591,LOC107706152,LOC107591617,LOC107742876,LOC107696527 coding downstream 47171 12507389 ~ 12513161 (+)
fbxl2 fbxl2,LOC107696556,LOC107742856,LOC107706183,LOC107591618,LOC107669511,LOC107593554 coding downstream 71087 12531305 ~ 12554353 (+)
clasp2 clasp2 coding downstream 96659 12556877 ~ 12606358 (+)
ubp1 ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855 coding downstream 149282 12609500 ~ 12631952 (+)
G342496 NA non-coding upstream 67932 12387784 ~ 12388775 (+)
G342333 NA non-coding upstream 180755 12275746 ~ 12275952 (+)
G342208 NA non-coding upstream 526650 11863246 ~ 11930057 (+)
G342189 bzw2,LOC107709265,LOC107724358,LOC107691535,LOC107702135 non-coding upstream 658912 11787073 ~ 11797795 (+)
G342190 bzw2,LOC107724358,LOC107568798 non-coding upstream 671727 11782266 ~ 11784980 (+)
G342546 NA non-coding downstream 14126 12474344 ~ 12476263 (+)
G342589 NA non-coding downstream 34824 12495042 ~ 12544734 (+)
G342592 NA non-coding downstream 37690 12497908 ~ 12498466 (+)
G342595 fkbp9,LOC108257175,LOC108426231,LOC107669520,LOC107706181 non-coding downstream 42603 12502821 ~ 12505195 (+)
G342617 NA non-coding downstream 96051 12556269 ~ 12556480 (+)
sostdc1b LOC108257373 other upstream 641434 11810109 ~ 11815273 (+)
dlgap3 dlgap3 other upstream 983384 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 1162351 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 1974737 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 2259705 10193747 ~ 10197002 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 231789 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 325619 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 444405 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 616952 13077170 ~ 13081229 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 1745503 14205721 ~ 14231844 (+)

Expression


Co-expression Network