G342546


Basic Information

Item Value
gene id G342546
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 12474344 ~ 12476263 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU405788
tgttATATATAACTGGTACACATTGGAACAAAATGCTGTTTCGTCAGGACCATGGTGTAACACAAATAAATGCAGTATCATGGTAAATAGGACtacattaaatgcaaatgatgaGTGCAAAAATGTATGATAAATCCACAGGAGAGTGCATGTTAACTAGGCAGGACAACAGAACACTGAGATGCAATTATGCACTACACATATCTGATAGTATACTGATGCAGAAACAATAATATCTGCACATAGACACATTAAATCACCCATGCTGACTAGTGAGGGCCAACTTCATTCTGATCAAGAACATTAAGTAGGATCATTACAGACTGTAAGACAGGAAATGTTTTGTCGTGGGTCCAGGCAAACTGCTAACAAGGTATATGTAGATTGTAGATCATTAGTATCATGGTACATATGTTGGTATACACATTTCCTTTGCTTattcaaagaaaaacatttgagTACGGCATGCATAAGCAGCAAACTGGCTgactaatatttttattcttagtgTTGTGCTTGAGCTTTAGTTGCTGAACCCATAAGATTAAGAGTTGATTATTTACAAGTACCTTGTGTACATCATTACTACATTTAGCAGGGCACTGGGTAACAGAGCACCCAAGGGATCCAAGcaatttgtaaatcatttgtaaCATTGTGCTTTACGTCAGCATTCTGTTTCTTGGAACGGTAGTTCTGCTTTACTTCTCCCAACAGTCATGGATGGTGAGACTCACCTGGACACCTTCttgtgcacatgtgcacacgTGCCAACACCAGAACGCCCCCTGTCCATTAGATTGGGAGGTTACCTGTAGCATCCACCTGGGGTCTCAGATTATGACATTTCTGAAAGGGGTGTTATCCATTCAGTCATTTGATTGTATAGTCCTACTTATTTTGATTCCAAAAGACTTCTATTTTATTGCTGTTGGTCTTTGCAGTTAGCTCTGTTTTGTGACTGGTTTTAATAATTCCTATGTTCTTGAGCTTCAATTTGAGTATCagggaataaaatatttataaccaGAGTCATATAGACTTTGATATGGCAAACATAActttaattataaaaagaacaaacactAGGATTTCCCAAAGCATAAAGATGAATTAACTACACCTGGACACCCAAGCACTGGACACATGGATGTCAAGGAATTCataaattgctgtaaatatCCTTGTCCAAGAATCCATTACCTTGAGGGAGTCCACTgattaaaaactaattaaaaaactgacttcttgaaaaaaaaaaaacatgggtaGGACTTAAGGATTAAATCAAaagcattctttaaaaaaaaaaaaaaaaagtttaattcaTTCCCTAGCATTTCCAGCAGTAACCCATTAGCACTGCCACCTCTCAGTGTAGGTAAAATAAGGCTACATAAAACATAACACAGTGGAATACATCTTAATTGTTCTATATGAAATGCAAGAACAAACACTTGTAATTTCAGTGCAACTCATTTAAAGACAGCCATAtaattctgacaaaaaaaaaaaaaaaaagacatctggCAGATTGTGTATGCATGTTCTAATGAAACATGTTTACCTTGAGTGACACCATGTGGTCAGAACACAATGcaatatttgtttgttgtgaggcaaatactattttttttttaagctcagCATAAATCAGCTCTAGTTTGTAACCAATTATATCTGAGCATGTTTCTTTAATCATGTGCATTAGGACAGTGTAACATATGTGGCCCCAGTTGCCACTCCACAGTTGTTGTCCTTCATGGACATAAGCACATAACCATCGTTACCCCAGTAAGTGGACCAGGAGTTCTTCACCAGCCAGTAAGGCTGTCCATCCAGTACCCCATAACCCACTGCCAGAACAGCATGGTCCAGGTCATCTATCCCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405788 True 1892 lncRNA 0.37 2 12474344 12476263

Neighbor

gene id symbol gene type direction distance location
si:dkey-166k12.1 LOC108257079 coding upstream 1465 12462745 ~ 12472879 (+)
pogza NA coding upstream 18487 12428895 ~ 12455857 (+)
anp32e anp32e,LOC107706176,LOC107669588 coding upstream 87150 12382783 ~ 12387194 (+)
jtb jtb coding upstream 126694 12340039 ~ 12347650 (+)
LOC113536355 kcnq4,LOC107593542,LOC107706174,LOC107591607 coding upstream 136046 12277881 ~ 12338298 (+)
crtap crtap,LOC107670137,LOC107593591,LOC107706152,LOC107591617,LOC107742876,LOC107696527 coding downstream 31126 12507389 ~ 12513161 (+)
fbxl2 fbxl2,LOC107696556,LOC107742856,LOC107706183,LOC107591618,LOC107669511,LOC107593554 coding downstream 55042 12531305 ~ 12554353 (+)
clasp2 clasp2 coding downstream 80614 12556877 ~ 12606358 (+)
ubp1 ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855 coding downstream 133237 12609500 ~ 12631952 (+)
pdcd6ip pdcd6ip,LOC107591619,LOC107742851,LOC107696546,LOC107706184 coding downstream 158487 12634750 ~ 12647260 (+)
G342538 psmb4,psb4,LOC107593590,LOC107696528 non-coding upstream 14126 12456707 ~ 12460218 (+)
G342496 NA non-coding upstream 85569 12387784 ~ 12388775 (+)
G342333 NA non-coding upstream 198392 12275746 ~ 12275952 (+)
G342208 NA non-coding upstream 544287 11863246 ~ 11930057 (+)
G342189 bzw2,LOC107709265,LOC107724358,LOC107691535,LOC107702135 non-coding upstream 676549 11787073 ~ 11797795 (+)
G342589 NA non-coding downstream 18779 12495042 ~ 12544734 (+)
G342592 NA non-coding downstream 21645 12497908 ~ 12498466 (+)
G342595 fkbp9,LOC108257175,LOC108426231,LOC107669520,LOC107706181 non-coding downstream 26558 12502821 ~ 12505195 (+)
G342617 NA non-coding downstream 80006 12556269 ~ 12556480 (+)
G342621 NA non-coding downstream 172232 12648495 ~ 12648717 (+)
sostdc1b LOC108257373 other upstream 659071 11810109 ~ 11815273 (+)
dlgap3 dlgap3 other upstream 1001021 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 1179988 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 1992374 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 2277342 10193747 ~ 10197002 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 215744 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 309574 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 428360 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 600907 13077170 ~ 13081229 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 1729458 14205721 ~ 14231844 (+)

Expression


Co-expression Network