G342589


Basic Information

Item Value
gene id G342589
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 12495042 ~ 12544734 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU405838
cgcgcacacacacacacacacccacagaGCGCACACTGTGTAACACTAGTTACATATGCACTTGTGGTCATATGAACCCCACACCAGGGGCACTGTCTAACACCTTAATAACCCCTTGTGCACGTATGCACGTATGCTCAGACATTCCAACAAACTCACATAGTGAACTGTGATGCAGTATTTGCAGTAAATACCCTGGAACCTCCTGACTAGGAGCTCTGGCAGTTATACAGTGTTCATAAAACCACAGTTGCATACTTAAATAGCATTCTTTTTCACTCCCCTGAACCACCAggataacatttattaacaatGTCATGAGAAACAAGACTCTGAGCTGCACAGAAAGATGCTCAGAGATGAGCTTTACAGCACTGGCAGGGACTAAGTTAACTTTGCAAAAACTGAAGAAGGTGCAAGATGATGCCCAAGTTGCAGCAGACCCTTCATGGAGAGGTAGGCCCATGAGGAGGAGGCTCTCCTTTTTGGTTAGTATATCACAGTAGGGTTTAGGAGTCCATTTTTTCGACCCACTGGGCTGCTTAGACATGAGAACACCCCTTTTCTTAATTGGTATAGCAGTTCAACAGCTGGCCTGAAGATTGAATGGCTGTCGTCCGGTCCAGATTACACTGCAGTAACACAGACTGAGCACAGCAAGAAACATTCTGTAGGCTCATTGTCGTTGAAAGCTACAGGGTCAATAGAATGATTGACAACATATGATATGACCTTGGGCAGAAAACCTagattcagccacaagagtcaCCTGGCTTCCAACACATACAAAGCAAGTTTATCATCAGAGCATACAACTCTACAGTTGTCTTAGCTGAAGTGATGAGTAGCAGGAAGGCACTTCTCAAAGATACCCACCTCAACGCCAACATGAGAAAGACATTTGCGACTCCAGCGCACAAGGGAGGTCCCATGTAGGGAACATGGCAGATGGAGGCATCTCGCTCCCTATAGAGAGACAATAATCCTATGAgactgaaatatatatacagtaccagtcaaaagtttggataCACCTTCTTATTCa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405838 True 1045 lncRNA 0.45 2 12495042 12544734

Neighbor

gene id symbol gene type direction distance location
si:dkey-166k12.1 LOC108257079 coding upstream 22163 12462745 ~ 12472879 (+)
pogza NA coding upstream 39185 12428895 ~ 12455857 (+)
anp32e anp32e,LOC107706176,LOC107669588 coding upstream 107848 12382783 ~ 12387194 (+)
jtb jtb coding upstream 147392 12340039 ~ 12347650 (+)
LOC113536355 kcnq4,LOC107593542,LOC107706174,LOC107591607 coding upstream 156744 12277881 ~ 12338298 (+)
clasp2 clasp2 coding downstream 12143 12556877 ~ 12606358 (+)
ubp1 ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855 coding downstream 64766 12609500 ~ 12631952 (+)
pdcd6ip pdcd6ip,LOC107591619,LOC107742851,LOC107696546,LOC107706184 coding downstream 90016 12634750 ~ 12647260 (+)
arpp21 arpp21 coding downstream 105483 12650217 ~ 12665069 (+)
snrnp40 snrnp40,LOC107591625,LOC107593559,LOC107696518 coding downstream 158303 12703037 ~ 12709593 (+)
G342546 NA non-coding upstream 18779 12474344 ~ 12476263 (+)
G342538 psmb4,psb4,LOC107593590,LOC107696528 non-coding upstream 34824 12456707 ~ 12460218 (+)
G342496 NA non-coding upstream 106267 12387784 ~ 12388775 (+)
G342333 NA non-coding upstream 219090 12275746 ~ 12275952 (+)
G342208 NA non-coding upstream 564985 11863246 ~ 11930057 (+)
G342617 NA non-coding downstream 11535 12556269 ~ 12556480 (+)
G342621 NA non-coding downstream 103761 12648495 ~ 12648717 (+)
G342627 NA non-coding downstream 130407 12675141 ~ 12675351 (+)
G342628 NA non-coding downstream 132114 12676848 ~ 12677197 (+)
G342629 NA non-coding downstream 134381 12679115 ~ 12679330 (+)
sostdc1b LOC108257373 other upstream 679769 11810109 ~ 11815273 (+)
dlgap3 dlgap3 other upstream 1021719 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 1200686 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 2013072 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 2298040 10193747 ~ 10197002 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 147273 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 241103 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 359889 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 532436 13077170 ~ 13081229 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 1660987 14205721 ~ 14231844 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G234097 NA non-coding NW_019170844.1 APWO02000442.1 366321 ~ 376297 (+)