G342621


Basic Information

Item Value
gene id G342621
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 12648495 ~ 12648717 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU405904
TTGAGTGCTCCAATGACACTGTACAGTTGATGAAACCTAAAATTCAGTAGTAGTGCTCAGCAATGTCTCTGCATGTCTGTTTTGTTATCTTCATGGTAATTAATACCAGGGCACCAGTTACTTCCTGGTCACAAGGCTACTGCCAGAACTCTCTACCGGTTACCAGAAGTGGAATAAAAGCGCAGGTGTTTAAATGAACTGTCTTTCTGCACCTCGCCCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU405904 True 223 lncRNA 0.44 1 12648495 12648717

Neighbor

gene id symbol gene type direction distance location
pdcd6ip pdcd6ip,LOC107591619,LOC107742851,LOC107696546,LOC107706184 coding upstream 1235 12634750 ~ 12647260 (+)
ubp1 ubp1,LOC107706185,LOC107669383,LOC107696552,LOC107742855 coding upstream 16543 12609500 ~ 12631952 (+)
clasp2 clasp2 coding upstream 42137 12556877 ~ 12606358 (+)
fbxl2 fbxl2,LOC107696556,LOC107742856,LOC107706183,LOC107591618,LOC107669511,LOC107593554 coding upstream 94142 12531305 ~ 12554353 (+)
crtap crtap,LOC107670137,LOC107593591,LOC107706152,LOC107591617,LOC107742876,LOC107696527 coding upstream 135334 12507389 ~ 12513161 (+)
arpp21 arpp21 coding downstream 1500 12650217 ~ 12665069 (+)
snrnp40 snrnp40,LOC107591625,LOC107593559,LOC107696518 coding downstream 54320 12703037 ~ 12709593 (+)
nkain1 nkain1,LOC107593567,LOC107670117,LOC107591671,LOC107696573 coding downstream 65990 12714707 ~ 12723544 (+)
pum1 pum1 coding downstream 78399 12727116 ~ 12743818 (+)
sdc3 sdc3,LOC107696563,LOC106570634 coding downstream 102812 12751529 ~ 12784427 (+)
G342617 NA non-coding upstream 92015 12556269 ~ 12556480 (+)
G342589 NA non-coding upstream 103761 12495042 ~ 12544734 (+)
G342595 fkbp9,LOC108257175,LOC108426231,LOC107669520,LOC107706181 non-coding upstream 143300 12502821 ~ 12505195 (+)
G342592 NA non-coding upstream 150029 12497908 ~ 12498466 (+)
G342546 NA non-coding upstream 172232 12474344 ~ 12476263 (+)
G342627 NA non-coding downstream 26424 12675141 ~ 12675351 (+)
G342628 NA non-coding downstream 28131 12676848 ~ 12677197 (+)
G342629 NA non-coding downstream 30398 12679115 ~ 12679330 (+)
LOC117595825 NA non-coding downstream 35416 12684133 ~ 12687213 (+)
G342735 NA non-coding downstream 498328 13147045 ~ 13147846 (+)
sostdc1b LOC108257373 other upstream 833222 11810109 ~ 11815273 (+)
dlgap3 dlgap3 other upstream 1175172 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 1354139 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 2166525 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 2451493 10193747 ~ 10197002 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 43290 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 137120 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 255906 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 428453 13077170 ~ 13081229 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 1557004 14205721 ~ 14231844 (+)

Expression


Co-expression Network