G342718 (klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211)


Basic Information

Item Value
gene id G342718
gene name klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 13077170 ~ 13081229 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU406031
CTAAGGGTGATATAGTAGGCAACTCCAAGCGCTTGAGGCCCGGGTCCTTGGCTAGAACTTCACGCAAGTACTGGCTGACAGAGGACATGACCAGCTTGTGGACATCGAAGGCCTTAGACTTGCAAGCCAGCTCCAGGTCAGTGAGGAAGCGCTCTTGTCTCATACGGCTCAGCTCCTCCAGAAGAGCAGATCCATGTAGGGGCCGAGTCATTTCCCCACCCAGGCCAAAACCCCTTTCTCCAGGACGGATcactggtgacagggtcattCCATTGAGACGATTCAACTGCTCAATGCTGAGAGGCATTTCTAGTTTTTTTACCCCTGTCTCAGGGACCATTACCCCGCTCTCCAACTGTGCTGGCTCTGGAGCTGTCTTTTTGGGGCGGGGTGCCTTCTTCTTGGGGGCCATGATGAGAGATGGACTATTTTTCCTGGTTACCTATGTTAGTTACTGATGGCAGTGATGTCGAATTCACAGACTGATTCACAGCAGTCTAAAATATGGTAataatttaaaagtatttttaggTGTTTTGTTAGGGTTTTAATGTACGAACTCACTCCTTCTTTTGTCCTCAATGCAGTACTGACAGGctaaagaaacagacagacaggctttACTGAAAATTGATGAGGTGGGTGTAGGGTTgtcacacagcacacaggacCTCTTTTCCAGCTCTTTTTATCACTCTGTTCTCTTtctttgctctctcttttttatcatTCTTAACAAAatccttttctgttttcttcctcttttgtgGTACTCTACCCTTGtgtcctctgtctgtctgtcagagcACTGTCCACTTCCAAGCCTGAGGGAGACAGCTTCCTAGCAAAGCTACGTAACATTAACCCCAAGGCCTGAGCTCCACTTGGACCTCCATCTCCATATACAGTTAGCTACCCCTCCCCACCAAACATAGCCCACATCCAgg

Function

symbol description
klhl43 Orthologous to human KLHL31 (kelch like family member 31).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU406031 True 947 TUCP 0.48 2 13077170 13081229

Neighbor

gene id symbol gene type direction distance location
rpl11 rpl11 coding upstream 5505 13067186 ~ 13071665 (+)
LOC113536320 LOC108256977 coding upstream 11114 13056954 ~ 13066056 (+)
LOC113536323 eef1a1l2,LOC108256978,LOC108426655,LOC103044302,LOC107589444,LOC107696561,LOC107706209,LOC107654701,LOC107591637 coding upstream 20613 13052342 ~ 13056557 (+)
LOC113536322 eef1a1l1,LOC100526699,LOC103044018,LOC108426629,LOC107742828,LOC107654700,LOC107706208 coding upstream 24995 13048830 ~ 13052175 (+)
si:ch1073-513e17.1 LOC108257028,LOC108426616 coding upstream 40592 13030083 ~ 13036578 (+)
eloa tceb3 coding downstream 746 13081975 ~ 13090150 (+)
pithd1 pithd1,LOC107654704 coding downstream 9057 13090286 ~ 13094541 (+)
lypla2 lypla2,lypa2 coding downstream 14002 13095231 ~ 13102090 (+)
gatad1 gatad1 coding downstream 25634 13106863 ~ 13110701 (+)
LOC113535917 LOC108256774 coding downstream 33967 13115196 ~ 13125279 (+)
LOC117595825 NA non-coding upstream 389957 12684133 ~ 12687213 (+)
G342629 NA non-coding upstream 397840 12679115 ~ 12679330 (+)
G342628 NA non-coding upstream 399973 12676848 ~ 12677197 (+)
G342627 NA non-coding upstream 401819 12675141 ~ 12675351 (+)
G342621 NA non-coding upstream 428453 12648495 ~ 12648717 (+)
G342735 NA non-coding downstream 65816 13147045 ~ 13147846 (+)
G342836 NA non-coding downstream 220310 13301539 ~ 13301803 (+)
G343522 NA non-coding downstream 681855 13763084 ~ 13766601 (+)
G343620 NA non-coding downstream 888005 13969234 ~ 13994319 (+)
G343671 NA non-coding downstream 995228 14076457 ~ 14078541 (+)
si:ch211-199g17.2 NA other upstream 122445 12904623 ~ 12954725 (+)
LOC113536228 nobox other upstream 284697 12785837 ~ 12792473 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other upstream 381658 12692007 ~ 12695512 (+)
sostdc1b LOC108257373 other upstream 1261897 11810109 ~ 11815273 (+)
dlgap3 dlgap3 other upstream 1603847 11314530 ~ 11473323 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 1124492 14205721 ~ 14231844 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 other downstream 1152288 14233517 ~ 14250931 (+)
tnrc18 tnrc18,LOC107581723,LOC107742388 other downstream 2277564 15358793 ~ 15421748 (+)
G344364 actb2,actb,actbb,actb1,LOC102799139,LOC103039558,LOC107581721 other downstream 2352893 15434122 ~ 15484581 (+)
micall2a micall2 other downstream 3636242 16717471 ~ 16732200 (+)

Expression


Co-expression Network