LOC113528988 (LOC108257047)


Basic Information

Item Value
gene id LOC113528988
gene name LOC108257047
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 706407 ~ 711509 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917889.2
CTAGTCCTCACTCACTCTCTAGAGTAAGACCGAAAAGCCTCCATCAACATGGCACGCAGTAGCTTTGCATCAGGATCCGTGTACCTCGGTTATGGTGGAGGTGGAAGGGGTGGCAGCTTACGCGCCGGAAGCGTCCATGGTGGAGCAGGAGGCCATGGGGTTCTCATCTCCCAAGCCTCTCGGCCTTTGTTGGTTGGTCCATCTAGATTAGTTGGTGGAGGCCTCGGCTCTGGTGTAGGTCTTGGTACAGGTCTTGGTGTAGGTCTTGGTACAGGTCTTGGTTCAGGTCTTGGTTTAGGTCTTGGTTCAGGTCTTGGTGTAGGTCTTGGTTCAGGTATTGGTGCAAGCTCTGCTACAGTTTTAGGTGCAGGCTCTGCTGCAGGTTTTGGCTTTGGAAGTGCTGGTGGGTTTGGAAGTGGTGCTGCATTCAAAGTTGGACCTGGGTTCGGAGGTATCATTGGGGGAGCAGATGTTGGCATCCTGGGCAATGAGAAGTTCACCATGAGGGTACTCAATGACCGTTTGGCCTCCTACCTGAAGAAGGTGCACTTATTGGAAAAGGCCAATGCAGAGCTTGAGCTGAAGATCAGGCAATTTGTGGACAGCAGGACTTCACCTATTGCACGGGACTACACTGACTCCTTGTCTACCATCAATGAGCTCCAGGCAGAAATTCTGGATGCCATTCAGGTGAGAGGTACAGTCCAACTCAACATTGACAATGTCACCTTGGCTGCAGATGACTTTAGGATTAAGTATGAGAATGAGTTGTCCATTCGTCAGGCTGTTGAGGCTGATATCGCTGGGCTGAAGAGGCTGCTGGATGATATCCACCTGGGCATGGCTGAGCTCACTCTGCAGATTGACACACTGAATGACGAGAAGGCCTTCATCAAGAAGAACCATGACGAGGAAATGGTGACCACACGCAGCCAGATGAGTGGACAGATTCACGTGGAGGTGGAAGCTGCACCACAGCAAGATCTCACCAGCGTTCTGGAAGACATCCGTGATCACTACGAGACCATCGCTGCCAAGAACCGGAGAGAGCTCGAGGGCTGGTTCAAGGGCAAGTTGGAGACCCTGAGACAAGAGGTTGCTACCGGCACACAGACCATAGCAACATCTCATACAGAAATGAGTACAGAGAAAACCAAAGTGCAGGGCCTGGAACTCGAGCTCCAGTCTGTTCTGGCCGTGAAAGCATCCTTGGGAGCAAAACTGCTAGAGACACAGGCTTTCTACGCTGCGCACTTGTCAGGATACCAACTGCAGGTGACGAGTCTGGAGGAACAGCTGCTGCAGCTTCGTGCTAATCTTGATCGTCAAGGCCGTGATTATCAGATGCTGCTGGACATCAAGACCAGACTGGAGGTGGAGATTGCTGAATACCGGAGACTGCTGGAAATAGGGGCCCTCGGAATTGCCTTAGATATTACCGGCAGGAGCTCTCCTTCCGCGGCTCCTTCTGCAGCTCCTACCGGAGTGCTGCTACAGCAACCTAAAGAGAAGGCTGATCCAATTCCAGTAGAATGACAACAAAACACATGATGGAATGTATTTCACTAAGCATTTCAGTCAAgtaataaagataaaatttcAATCATGA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917889.2 True 1609 mRNA 0.51 8 706407 711509

Neighbor

gene id symbol gene type direction distance location
LOC113528992 LOC108257051,LOC108438410 coding upstream 12911 690756 ~ 693496 (+)
LOC113529047 LOC108256995,LOC108256994,LOC108438408,LOC107666325 coding upstream 20919 682280 ~ 685488 (+)
LOC113528991 LOC108256995,LOC108256994,LOC108438408,LOC108438412,LOC107666325,LOC107753917 coding upstream 27877 675097 ~ 678530 (+)
LOC113528990 LOC108438405,LOC108438407,LOC108256992,LOC107727715,LOC107753917 coding upstream 42123 659868 ~ 664284 (+)
LOC117595880 NA coding upstream 144089 561278 ~ 562318 (+)
si:dkey-89b17.4 LOC108257022,LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC107727719,LOC107665149 coding downstream 94796 806305 ~ 817243 (+)
utp18 utp18 coding downstream 182257 893766 ~ 906770 (+)
LOC113529000 NA coding downstream 199063 910572 ~ 950118 (+)
LOC117595860 NA coding downstream 237966 949475 ~ 951383 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding downstream 312969 1024478 ~ 1033504 (+)
G336143 NA non-coding upstream 62269 643931 ~ 644138 (+)
G336141 NA non-coding upstream 74106 631774 ~ 632301 (+)
G336115 NA non-coding upstream 79458 622732 ~ 626949 (+)
G336126 NA non-coding upstream 86254 614272 ~ 620153 (+)
G336111 NA non-coding upstream 112868 593316 ~ 593539 (+)
G336167 NA non-coding downstream 56686 768195 ~ 772828 (+)
LOC113528997 NA non-coding downstream 64366 775875 ~ 779026 (+)
G336202 NA non-coding downstream 178309 889818 ~ 906892 (+)
G336209 NA non-coding downstream 193730 905239 ~ 906488 (+)
G336241 LOC108257176 non-coding downstream 294723 1006232 ~ 1008093 (+)
G336034 NA other upstream 419192 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 27860 739369 ~ 749674 (+)
G336172 NA other downstream 82608 794117 ~ 794695 (+)
G336213 NA other downstream 262160 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 421446 1132955 ~ 1136124 (+)
G336334 NA other downstream 558300 1269809 ~ 1335574 (+)

Expression


Co-expression Network