LOC113528990 (LOC108438405,LOC108438407,LOC108256992,LOC107727715,LOC107753917)


Basic Information

Item Value
gene id LOC113528990
gene name LOC108438405,LOC108438407,LOC108256992,LOC107727715,LOC107753917
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 659868 ~ 664284 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917893.2
CTTCATCTCCTCACTCGCTCATCACTTGATTCCTCTCGTGCTTGTTGCTGAGTTAGACTCCACTGCACCGTCACCATGGCATCCATTGTCTCCTCTCACACCAGCTTCTCCTCAGGAGGATCCAGTGGTTCCCTGCGTTCCGTAGGTGGTGGCCGCGTGAGTAGTGGGAGAGCCCTGAGCGTTTACGGAGGCGCCGGTAGGTATGGTGTACGTGTCTCAGGTGGCCCCGCGCTCCTCGGCTCTGCAGTTGGAGGTGGCTTCGCGGCAGGTGGTGGCTTTGGAGCAGGCAGCGGTTTTGGTGCAGGCTTTGGAGGAGCCGGGGGCGGTTTCAACCTCAGTGATGCCGTTGATGTCTCAGCCAGTGAGAAGCTGACGATGCAGAACCTGAATGAGCGTCTGGCCTCCTACCTGGATAAGGTGCGCTCACTGGAGAAGGCCAACGCCGATCTGGAGCTCAAGATCCGTCAGTTCCTTGAGAGCAAGACCTCACCCAAGGCCCGAGACTACTCTGCTTACTTTGCCACCATCAGTGACCTGCAGGACAAGATCCAGAATGCCACACGCATCAATGGAGGCATTTACCTCAGCATTGACAACGCCAAGCTCGCTGCTGATGACTTCAGAGTCAAGTATGAGAACGAGCTGGCCATGAGGCAGTCGGTGGAGGCTGACATCGCCGGGCTGAGGAGAGTCCTGGACGAGCTGACGTTGGCCAGATCAGATCTGGAGATGCAGATTGAGGGTCTGAAGGAGGAGCTGGTCTTCCTCAAGAAGAACCACGAAGAGGACCTCATCGCTGCACGGTCTCAGATGAGCGGTCAAGTCCACGTGGAAGTCGATGCCAAACCACAGGAAGACCTCAACAAAGTCCTGGCTGAAATCCGCGAGCACTATGAAGCCGTCGCCGCTAAAAACCGCAGAGATCTCGAAGCTTGGTTCCAGaccaagAGCGAGGCGCTGAACAAAGAAGTCGCCGTCAGCACGGAAACGCTCCAGACCAACAGATCGGAACTCACAGAGGTGAAGCGCACGCTGCAGGGGCTGGAGATCGAGCTGCAGTCACAACTCAGCATGAAAGCGTCGCTGGAACACACGCTAGCAGACACACAGGCACGCTACGCATCCATGCTAGCAGGCTACCAGCAGCAGGTGATGAATCTGGAGGAGCAGCTGGTGCAGCTTCGCGCTGATCTGGAGCGTCAGGCTCAGGAGTATCAGATGCTGCTGGACATCAAGACCAGACTGGAGCTGGAGATCGCTGAGTACAGGAGACTGCTGGATGGAGAAAGTGTCGGAAGcagctccagctccagcatcGCCACCAAGCGCCATGTGGTGAcggtggtggaggaggtggtggaCGGCAAAGTCGTCAGCTCCACTTCCAAATCCGTCACAAATAAACTGTAAGGAAACATCGCGAATGAGAAGAACACAAACATCCTCCAAGAAACATGAATTATGACAATGCTAAAACatcaataaagtgttcagtcttaaacatg
>XM_026917894.2
TCTTCATCTCCTCACTCGCTCATCACTTGATTCCTCTCGTGCTTGTTGCTGAGTTAGACTCCACTGCACCGTCACCATGGCATCCATTGTCTCCTCTCACACCAGCTTCTCCTCAGGAGGATCCAGTGGTTCCCTGCGTTCCGTAGGTGGTGGCCGCGTGAGTAGTGGGAGAGCCCTGAGCGTTTACGGAGGCGCCGGTAGGTATGGTGTACGTGTCTCAGGTGGCCCCGCGCTCCTCGGCTCTGCAGTTGGAGGTGGCTTCGCGGCAGGTGGTGGCTTTGGAGCAGGCAGCGGTTTTGGTGCAGGCTTTGGAGGAGCCGGGGGCGGTTTCAACCTCAGTGATGCCGTTGATGTCTCAGCCAGTGAGAAGCTGACGATGCAGAACCTGAATGAGCGTCTGGCCTCCTACCTGGATAAGGTGCGCTCACTGGAGAAGGCCAACGCCGATCTGGAGCTCAAGATCCGTCAGTTCCTTGAGAGCAAGACCTCACCCAAGGCCCGAGACTACTCTGCTTACTTTGCCACCATCAGTGACCTGCAGGACAAGATCCAGAATGCCACACGCATCAATGGAGGCATTTACCTCAGCATTGACAACGCCAAGCTCGCTGCTGATGACTTCAGAGTCAAGTATGAGAACGAGCTGGCCATGAGGCAGTCGGTGGAGGCTGACATCGCCGGGCTGAGGAGAGTCCTGGACGAGCTGACGTTGGCCAGATCAGATCTGGAGATGCAGATTGAGGGTCTGAAGGAGGAGCTGGTCTTCCTCAAGAAGAACCACGAAGAGGACCTCATCGCTGCACGGTCTCAGATGAGCGGTCAAGTCCACGTGGAAGTCGATGCCAAACCACAGGAAGACCTCAACAAAGTCCTGGCTGAAATCCGCGAGCACTATGAAGCCGTCGCCGCTAAAAACCGCAGAGATCTCGAAGCTTGGTTCCAGaccaagAGCGAGGCGCTGAACAAAGAAGTCGCCGTCAGCACGGAAACGCTCCAGACCAACAGATCGGAACTCACAGAGGTGAAGCGCACGCTGCAGGGGCTGGAGATCGAGCTGCAGTCACAACTCAGCATGAAAGCGTCGCTGGAACACACGCTAGCAGACACACAGGCACGCTACGCATCCATGCTAGCAGGCTACCAGCAGCAGGTGATGAATCTGGAGGAGCAGCTGGTGCAGCTTCGCGCTGATCTGGAGCGTCAGGCTCAGGAGTATCAGATGCTGCTGGACATCAAGACCAGACTGGAGCTGGAGATCGCTGAGTACAGGAGACTGCTGGATGGAGAAAGTGTCGGAAGctccagctccagcatcGCCACCAAGCGCCATGTGGTGAcggtggtggaggaggtggtggaCGGCAAAGTCGTCAGCTCCACTTCCAAATCCGTCACAAATAAACTGTAAGGAAA

Function

GO: NA

KEGG:

id description
K07604 KRT1; type I keratin, acidic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917893.2 True 1505 mRNA 0.56 7 659869 664284
XM_026917894.2 False 1413 mRNA 0.57 7 659868 664194

Neighbor

gene id symbol gene type direction distance location
LOC117595880 NA coding upstream 97550 561278 ~ 562318 (+)
LOC117595881 NA coding upstream 119147 539688 ~ 540721 (+)
LOC117595859 NA coding upstream 163550 485216 ~ 496318 (+)
LOC117595878 LOC108259807 coding upstream 220252 428318 ~ 439616 (+)
LOC117595858 NA coding upstream 265678 393549 ~ 394190 (+)
LOC113528991 LOC108256995,LOC108256994,LOC108438408,LOC108438412,LOC107666325,LOC107753917 coding downstream 10813 675097 ~ 678530 (+)
LOC113529047 LOC108256995,LOC108256994,LOC108438408,LOC107666325 coding downstream 17996 682280 ~ 685488 (+)
LOC113528992 LOC108257051,LOC108438410 coding downstream 26472 690756 ~ 693496 (+)
LOC113528988 LOC108257047 coding downstream 42123 706407 ~ 711509 (+)
si:dkey-89b17.4 LOC108257022,LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC107727719,LOC107665149 coding downstream 142021 806305 ~ 817243 (+)
G336143 NA non-coding upstream 15730 643931 ~ 644138 (+)
G336141 NA non-coding upstream 27567 631774 ~ 632301 (+)
G336115 NA non-coding upstream 32919 622732 ~ 626949 (+)
G336126 NA non-coding upstream 39715 614272 ~ 620153 (+)
G336111 NA non-coding upstream 66329 593316 ~ 593539 (+)
G336167 NA non-coding downstream 103911 768195 ~ 772828 (+)
LOC113528997 NA non-coding downstream 111591 775875 ~ 779026 (+)
G336202 NA non-coding downstream 225534 889818 ~ 906892 (+)
G336209 NA non-coding downstream 240955 905239 ~ 906488 (+)
G336241 LOC108257176 non-coding downstream 341948 1006232 ~ 1008093 (+)
G336034 NA other upstream 372653 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 75085 739369 ~ 749674 (+)
G336172 NA other downstream 129833 794117 ~ 794695 (+)
G336213 NA other downstream 309385 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 468671 1132955 ~ 1136124 (+)
G336334 NA other downstream 605525 1269809 ~ 1335574 (+)

Expression


Co-expression Network