LOC113528992 (LOC108257051,LOC108438410)


Basic Information

Item Value
gene id LOC113528992
gene name LOC108257051,LOC108438410
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 690756 ~ 693496 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917896.2
taaatgttacataacatGCAATTATGTGAATCTACTGGAATCTGTAGAGGGAAGATTCAGCCAGACTATAAATGTCTGCTGAACTTCTCAATCTCACTCACTCTCCAGAGTAAGACCGAAAAAGCCTCCATCAACATGGCCAGCACCTTCTCTGCCCACACTAGCTTTGCATCTGGATCCATGGTCGGAGGATCCATGGGATCCTCGCGTATGTCTattggtggtggaggaggaagcCGAGTCAGTGCAATGAGGGCTGGAAGTGTCTATGGTGGAGCAGGAGGGTCTGGGGTTCGCATCTCCCAAGCCTCTCGGTCCTTGTCCTTTGGTGCATCTGGAGGCAGTGCTGGTGGAGGCTTCAGCTCTGGTGCAGGTTTTGGTGCAGGATTTGGAGGTGGCGCAGGATTTGGAGGTGGTGCATGGTACGGAGGTGGTGCTGGGGAAGCGGACAGTAGCATCATCGGCAATGAAAAGTTCACCATGCAGAACCTCAACGACCGTCTGGCCTCCTACCTGGACAAGGTGCGCTCACTGGAGAAGGCCAATGCAGATCTCGAGCTCAAGATCCGCCAGTTCCTAGACAGCAAGACCTCACCTACTGCACGCGACCACTCTGGCTCCTTGGCTACCATCAGTGAGCTCCAAGCCAAGATTCTGGATGCCATTCAGTTGAATGGTACTGTCCACCTTAGCATTGACAATGCCAGCTTGGCTGCAGATGACTTCAAGATGAAGTATGAGAATGAGTTGGCCATGCGTCAGTCTGTTGAGGCTGATATTGCTGGACTGAGGAGGTTGCTGGATGATCTGAACCTGACCAAGAAAGATCTCACCCTGCAGATTGATGCCCTGAATGATGAGCTGAGCTTCCTCAAGAGGAACCATGAGGAGGAGCTGCTAGCTGCACGCGGCCAGATGAGCGGACAGATTCATGTTGAGGTTGACGCTGCACCACAGCAAGACCTCACCAAGGTCATGGAAGAAATCCGCGAGCACTATGAAGCCGTTGCTGCCAAGAGCCAGAGAGAGCTTGAGGGCTGGTTCCAGACAAAGTCTGAGACCCTGAAACAGGAAGTTGCTGCCAGCACTGAGACTCTGGCCGTCTCCAAAACAGAAGTGAACACCGTTAAGAGCACTTTGCAGTCTTTGGAAATTGAGCTCCAGTCTCTGATGGCCATGAAAGGCTCCCTTGAGGGAACACTGTCTGAGACTCAAGCCCGTTATGCCATGCAGTTATCAGGATACCAAGTGCAGGTGACGAGTCTGGAGGATCAGCTGGTGCAGCTTCGTGCTGATCTGGAGCGTCAGTCTCAGGAGTATCAGATGCTGCTGGACATCAAGACCCGACTGGAGCTGGAGATCACTGAGTACAGGAGGCTGCTGGATGCTGAGGCCAGTGGCAGCGCCTCGATTTCCTCCACCAAGACCTCCACCAACAAAACAGCAATCATCACCGTGGTGGAAGAGGTGGTTGATGGGAAAGTCGTCTCTACCTCCTCTACATCTCTTACTAAGTAATGAAAGATGAACTGGAATTGTGTTTATTGGAGTATAATTCACCAAGCATTTCagttcaaaaataaaacatttttaatcatga

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917896.2 True 1600 mRNA 0.51 8 690756 693496

Neighbor

gene id symbol gene type direction distance location
LOC113529047 LOC108256995,LOC108256994,LOC108438408,LOC107666325 coding upstream 5268 682280 ~ 685488 (+)
LOC113528991 LOC108256995,LOC108256994,LOC108438408,LOC108438412,LOC107666325,LOC107753917 coding upstream 12226 675097 ~ 678530 (+)
LOC113528990 LOC108438405,LOC108438407,LOC108256992,LOC107727715,LOC107753917 coding upstream 26472 659868 ~ 664284 (+)
LOC117595880 NA coding upstream 128438 561278 ~ 562318 (+)
LOC117595881 NA coding upstream 150035 539688 ~ 540721 (+)
LOC113528988 LOC108257047 coding downstream 12911 706407 ~ 711509 (+)
si:dkey-89b17.4 LOC108257022,LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC107727719,LOC107665149 coding downstream 112809 806305 ~ 817243 (+)
utp18 utp18 coding downstream 200270 893766 ~ 906770 (+)
LOC113529000 NA coding downstream 217076 910572 ~ 950118 (+)
LOC117595860 NA coding downstream 255979 949475 ~ 951383 (+)
G336143 NA non-coding upstream 46618 643931 ~ 644138 (+)
G336141 NA non-coding upstream 58455 631774 ~ 632301 (+)
G336115 NA non-coding upstream 63807 622732 ~ 626949 (+)
G336126 NA non-coding upstream 70603 614272 ~ 620153 (+)
G336111 NA non-coding upstream 97217 593316 ~ 593539 (+)
G336167 NA non-coding downstream 74699 768195 ~ 772828 (+)
LOC113528997 NA non-coding downstream 82379 775875 ~ 779026 (+)
G336202 NA non-coding downstream 196322 889818 ~ 906892 (+)
G336209 NA non-coding downstream 211743 905239 ~ 906488 (+)
G336241 LOC108257176 non-coding downstream 312736 1006232 ~ 1008093 (+)
G336034 NA other upstream 403541 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 45873 739369 ~ 749674 (+)
G336172 NA other downstream 100621 794117 ~ 794695 (+)
G336213 NA other downstream 280173 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 439459 1132955 ~ 1136124 (+)
G336334 NA other downstream 576313 1269809 ~ 1335574 (+)

Expression


Co-expression Network