rab25a (rab25a,LOC108257330,LOC108442629,LOC107669986,LOC107693307,LOC107753478)


Basic Information

Item Value
gene id rab25a
gene name rab25a,LOC108257330,LOC108442629,LOC107669986,LOC107693307,LOC107753478
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1160733 ~ 1169288 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918362.2
gtgtgtgtgtgtgtgttggcagttAGACCTGTTCCTCCTGACACACTGCTCTGTCGACGCCGAGCCTCATCAACACAGGAAGCAGAGCACAGTCCCGACAGCATGGGGTCATAACTCATCCTCATCACAGCCAGATGATTTGATCAGTGTGGAgtttcctcatttcctctgTCCTGAGCTGCACTTTGGACGCTGACGTGAACATGGCCACCGATTTGGGATACaactttgtttttaaagTGGTGTTAATTGGTGAATCTGGAGTTGGGAAGAGCAACCTGCTGTCCCGATTCACCAAGAGCGAATTTAACCACGACAGTCGCACCACCATCGGGGTGGAGTTCAGCAATCGCAGCGTGCAGCTGGACGGAGTGACCATTAAAGCGcagatttgggacacagccggTCTGGAGCGCTACAGAGCCATCACCTCAGCGTATTACAGAGGTGCGGTCGGAGCCCTGCTGGTGTATGACATCAGCAGACACCTGACGTACGAGAACGTGGAGCGCTGGCTGAAGGAGCTGTACGACCACGCCGACCCTCACATCGTCATCATGCTGGTGGGGAATAAGAGTGATCTGGCAACCCAGCGCACCGTCCCCACAGAGGAGGCCAAAGCTTTTGCagAGAGTAAAGGTCTGCTCTTCATCGAAACTTCAGCTCTCCAATCAACCAACGTCGAGAGTGcgttcctccaggttctcacAGAAATCCATAAGAAGGTGGCGAGTAAACAGGTGACTCGAGGCTCCATCAGCGCCGTGACTCTCGGCACCACCGGACCCATCATCGAACCTACAGAAGAGAGCAGGAGCTGCTGTAGGAAACAGTGAAGATCAAATCATCATCCTCGCAGAGATGCCTACAGCGTTACCAGCTTTATACAGCGTAACAGTGCAGCTGGTCCCTcggctgtgttccaatactgCTCCTCAATGCACACTCCTCCACTTCCCCTGATCAGCTCAGTTTCTTCTAATCCGCTCGTGAGGATCGAGTTGACGTCACTGTATTCCGTCCATTAGGAAAATCTGTAATGGTTTCCATCAGATTCCTGAAGGTTTCCATTACAGATattctgattaatattaaacacaacTAGAACCCAAGAGAACCTTCTTTTAGGAGAATCAGAGAATCCATCAGAAACCATCAGGATCCACACATTCCATGAAACTACCATTATAGACcaccagaaacacattaaaacccATTAGGAACCTGAAAATCTGTAATGGTTTCCATCAGATTCCTGAAGGTTTCCATTAGAGATGATCCAATAGGACCTTTTTTAACCATCACAATGAAATCAGATACTCCATCAGAAACCATTAGAAACCATTACAGCCAGCCAGAAATGCATTAAAACCCATTAGGAACCAGTAGAACTCTGTATATAGCTCATTTTAATCCACTTCAGATCGAACTGGctaattttaaatttagattaATTTTTGTTGCATGCTAATTTCAGCCAACAGTGTTGATTAGCTTGTGAATAGCTTAAAAAGCTAAAATTgggtgtattattattattattagaatcatatagaaattaaaaacaacaacaactaaaaCACAGCTAGCGGCCTAACAGCGGATTAGCATAACGCTGAGCTTGTGGCTAAGTGAGGAAACGGGAATTTTCTGACTTCTGAGTAGGAATAATCTGTTTCAACTTGGAATTCTCTGTTGGAATTGAATCCAAATAACTGATTTAAAGTCAGATTTTAAGTTCTTTAAAATGGCTAAATGCAGGAGaagagctgattttttttaaaaactaaatgtgcttgttttattttcaggacAGTTTTCAGTAAATTAGCCTAGCCTAGCCTACATCCTACATTCTActcctaaaataaataaaacacaaacagctttgagagaggtttttttttttttttgagagtgtATTCTGAGATTCTGCACTCATGTGAAGCTGTTTGAGAGATTTTTTTACACACGACACAAACGAGCGCTAGCTTcctgtgagcggccattttgattctGAACTTAAACAGCTCAGGCTTGTGTAAACGCTTTCAGGTGGGAAACAGGAAGTTCAGAGTTTGATATAATGTGAAAGGCAAATCCGTACTCATTTCTCCATAACATCGAGCTAGCACTATTTAAACTCACTTCTCGGGTTTTACACGTTACATTACTACGCTAGCAAGCGTTAGAGATTTAGCGAGCTAATACACAGCTTGAAGGAAACTCGGATGCTGCGTCTCAGTTGTGTCTTCTATCCGTCCTAAATAGTGTCCGAGATTAGAATTAACATGTTCTAAATCGCAGCACATTGAAATGAGGATCCCAGAGATACCCAGATTATTGACTATTTCAGGTAGAGTTTTGAAGTGTCGATCCGTGGACattttttcagctaatattacccacaatccctagcatgaggaaggaggaggaggagttttaTGACGGTTTGTTTCACGAATTCAAGGACGCGTTTTAGAGAAGTGTAAAAGggaatgttaaattaaatgatgTGGTATAAATTATATCAGGAATAacgaatgaagaaaagctgagatgcgatgaggaggttgtttacGGTGACACGTGTGTGCGTAACCAGGCAACAACAACGTTCTCTTCATGACATCATGACGTGTTTGTGAGTTAATGTCTCTGTAATCGCATACTCTTTTgatacacactcaaaagtatgtaccTTTTCTTCACAAGAAGAGTGCACAGTTTTAGTGCACAGTATAAGTAGGTGGATAGAGACGCAGGGAGTGTGTAGAGTTTTCATTTTCTCGAGATCGAGTGTGTTCCTGGTGAACAATACACTCCGACACACACTGCGAGAACACACTCGTGACGTACGCTGTGCTTTGGAGTCGCTAGGGGAAGTGCACTAGTGTGTGTTGAGCATGGTATTGGAACACAGGGCTGGGTTTggatcatgttttgttttttttatgtgattttttttattttcgaGCCGTGTACAacatgttgatgatgatgatgatgatgatgatggtgtaaAGACGACGTCATGGTTGGTGTTCAGCCACATTTACACTTTGGATGGATGAGTTTCATAAACGAAATTATTTATGACGCAGAGACGTCGatcctacagaaaatgtttacgTCATTTGTAttgtttcagtttgttttgtaagtgtgaagtttaaaaaatcacacactttaaaaagcaaagctcctactgtctcacacacacacacacaaattattaaaaatgtaaaattctaatatattttaatatgaaatctatatttttttgtgtcaaTTGTACAATTCTGCAAATCTTATCCCTGCTGTGTAGCTTCACCTGAagataaacacaataaaattcaaatatttaaaccTTTA

Function

symbol description
rab25a Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in exocytosis. Predicted to be active in recycling endosome. Orthologous to human RAB25 (RAB25, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-25-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07906 RAB25; Ras-related protein Rab-25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918362.2 True 3375 mRNA 0.42 5 1160733 1169288

Neighbor

gene id symbol gene type direction distance location
gabpb2a LOC108257329 coding upstream 13646 1137077 ~ 1147087 (+)
LOC113529037 samd14 coding upstream 57654 1080994 ~ 1103079 (+)
LOC113529039 LOC108257110,LOC105013290 coding upstream 84187 1065767 ~ 1076546 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644 coding upstream 97718 1038965 ~ 1063015 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding upstream 127229 1024478 ~ 1033504 (+)
fbxl20 fbxl20,LOC107727724,LOC107665129,LOC107666314,LOC107549884,LOC107563017 coding downstream 188722 1358010 ~ 1376292 (+)
LOC113546245 NA coding downstream 210365 1379653 ~ 1387764 (+)
LOC113546318 LOC108257321 coding downstream 236977 1406265 ~ 1426607 (+)
LOC113546243 LOC108257322 coding downstream 258697 1427985 ~ 1437422 (+)
LOC113546241 LOC108257282,LOC108257284,LOC108257326,LOC108257286,LOC108257289,LOC108257310,LOC108280069,LOC108257281 coding downstream 274816 1444104 ~ 1521750 (+)
G336302 NA non-coding upstream 763 1159655 ~ 1159970 (+)
G336245 sf3b4,LOC102792253 non-coding upstream 7819 1117643 ~ 1152914 (+)
G336246 NA non-coding upstream 33324 1028056 ~ 1127409 (+)
G336295 psmd3,LOC107703632,LOC107573823,LOC107757733,LOC107570970 non-coding upstream 37160 1122267 ~ 1123573 (+)
G336214 NA non-coding upstream 96578 1020239 ~ 1064155 (+)
G336313 NA non-coding downstream 14280 1183568 ~ 1187725 (+)
G336319 NA non-coding downstream 23399 1192687 ~ 1193174 (+)
G336337 NA non-coding downstream 138033 1307321 ~ 1308087 (+)
G336349 NA non-coding downstream 151527 1320815 ~ 1335907 (+)
G336364 NA non-coding downstream 188036 1357324 ~ 1357589 (+)
mllt11 mllt11 other upstream 24609 1132955 ~ 1136124 (+)
G336213 NA other upstream 184412 973669 ~ 976321 (+)
G336172 NA other upstream 366038 794117 ~ 794695 (+)
G336161 LOC108257052 other upstream 411059 739369 ~ 749674 (+)
G336034 NA other upstream 873518 286849 ~ 287215 (+)
G336334 NA other downstream 100521 1269809 ~ 1335574 (+)
G336350 cdk12 other downstream 156528 1325816 ~ 1327507 (+)
G336433 parp10 other downstream 488029 1657317 ~ 1659459 (+)
polr2k NA other downstream 505752 1675040 ~ 1680352 (+)
G336822 ldlrad4 other downstream 706986 1876274 ~ 1945866 (+)

Expression


Co-expression Network