polr1f (twistnb)


Basic Information

Item Value
gene id polr1f
gene name twistnb
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6345471 ~ 6350729 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929374.2
gtgtttttaacaCGAGGAAACAAACCACGTGTTTCCGTGCCAAAGTTTAGCTAACATGGCCAACCTGGAGCAGACAGATGATGATCCAAAATCGAGTGTAACCTCCACAGACAAGTCCGCGGTGTTAAACCCAGCTCCAGGCCCAACTCCAGCTCCAGCCCCGGCTCGTGATGCTCTCGCGGTTCCGTGTCTGATCCCGAGTTTCGCGGAGGCGCGTGAGCTCGTGCCCGCGCCGTACTCGTGTCTCGTGCTGCACACACACCGCAGACACGTCGCGCTGCCGCCCATGTACCTGAACAAGAAGAGGACCGGAATCCAGCAAGAACTCAACGCTGACCTTTTAAAGTACTCCAACAGTTTGAAAGGTGTGCCTTTGGCTTATGATGGCATCAAAATTATAGGACATCATGGGGACATTTTCGATGACCAAGGCTACATTCACTTAAACATCGAGGCATCGTTTGTGATATTCAAGCCGAAGAAAGGAGAAACActtgtgGGTGTGATCAATAAAATCGGAGTGGGCCATGTGGGCTGCCTGGTGCACGGCTGCTTTAACGCCAGCGTGGTGAAGCCGGCTCAGCTCACTCCTGAGCAGTGGAGAGACTCAGGCCTGAAGCTGGGAAGCAGCCTGAAGTTCGAGGTGTTTCAACTGGATGCTGATGTGGCTGGAGTTCTGCTGATCAGAGGAAGACTGGAAAAATCcagGGTGCAGGAGCTTATTGCCTCCTTCAGCAGTACAGAAACAGAGCAGGACGAGACGGTGGAAGTGGCCACTGAACCAGACTCGGTCACTACTGAAGACCCCTCTGAGAGCTCTGACGCTTCAAAGcccaagaagaaaaagaagaaaaaggacaAAGAAAGGGACAAGCAGGCTGTGGAGGAGGTGAACAGCAACCAGACAGATGAGGCTGTGACTCACGATGTTAACGGTAACAGAATGGAGGTGGACTCTGATCCCAGCAGCCGTCCAAAGGAGAAAacgaagaaaaagaaaaaggataaaaagcaGGAATCGGACGCTGAGCTGCCGTCCCCCAGCGCTGATCTCCCAGGCAGTGACTCAAGCGGATACATCAGTGATAAAAGCAGTAAAAAGAGAAAGGCACAGGAGGATGAGCTCCTCCAAGAGGACTCTGACATTCTTCCAgctaaaaagaagaaaaagatgaagTGATGCTTGCTTTTAtactgtaactttaatttttataGTGCCTGAATGTATATTAGTAGTAATATACAATAATGCAATAAAGGACAGATTACACTGCAgcaagatatatatttttacttttttttaacaatagagGGCAGTATGGAgttttcagtgttcagtttCACTGTTTCTCCAGCAGAGTCCAGCTGATTTAAACTGAAAATCAAGTATTAATGATGGCATGATGGGTTTGGAagcaaaaaagagagataatgatttgaattttaaaagctATTGAATTTGTAGCATTTTAAGGTATTACTTTGAAAAAtcacatctgtatttatttgttttgactGAACTACTTTGAATTTCAAGGTGGATTTatccacattttaaaaatgatgttttcagaAGCATCAAGTATGTGTTCAGATTTAATAATCCAGTTTTCAGATATTCCAAAATGGTATTCAGACTGCTCATGCTAGTATTCAGAATCATCCAGTCACATTCAGTTTGCAGaattcactttaaaaaatacaaagaaaaggCAATCAAACCTGGAATGAGAGATTGTGTACTGATTGTTTAGGGGTGTTGCTCAAAACCAAGGAAAGTACATTCTTGACGAGTTACTCACAAGGACACAAGACTGGAGAATGAACGTATACGCATTTAAGGTGGATTGTGTACTTCTTATTGCACAATACATCTGCCTCATCTGAGTTCACCAGTTAGTCACAGTCTGTTTAATCATCTGTATTGTACAAATGTGTTTTGGATTTCCTGGATAACTTTTAGGTGAAAAGTTTTCCAAGTTCAGTTTAAACCTGTTGGTTAATGTgtcatataaataaagattgttTACACACCA

Function

NR:

description
DNA-directed RNA polymerase I subunit RPA43

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005730 nucleolus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function

KEGG:

id description
K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929374.2 True 2036 mRNA 0.43 4 6345471 6350729

Neighbor

gene id symbol gene type direction distance location
sp8a LOC108257401 coding upstream 70459 6272947 ~ 6275012 (+)
cdca7b cdca7l coding upstream 147856 6188169 ~ 6197615 (+)
LOC113536325 NA coding upstream 228764 6112101 ~ 6116707 (+)
LOC113536255 NA coding upstream 236428 6100546 ~ 6109043 (+)
slc39a4 slc39a4 coding upstream 401247 5927706 ~ 5944224 (+)
LOC113536247 ferd3l,LOC102791589 coding downstream 29431 6380160 ~ 6381337 (+)
twist1a twist1,twist1a,LOC108257132,LOC107755947,LOC107709721,LOC107667574 coding downstream 33472 6384201 ~ 6385680 (+)
snx13 snx13 coding downstream 126594 6477323 ~ 6524126 (+)
LOC113536295 ankrd28,LOC108256911,LOC108441435,LOC107745379,LOC107596646 coding downstream 177679 6528408 ~ 6571258 (+)
znrf2a znrf2,LOC105939633,LOC106531196 coding downstream 270487 6621216 ~ 6634193 (+)
LOC117595885 NA non-coding upstream 25697 6313485 ~ 6319774 (+)
G339167 NA non-coding upstream 143848 6200493 ~ 6201623 (+)
G339159 LOC108256777 non-coding upstream 169874 6174321 ~ 6175597 (+)
G339126 NA non-coding upstream 217187 6116749 ~ 6128284 (+)
G339055 NA non-coding upstream 356979 5987811 ~ 5988492 (+)
G339275 NA non-coding downstream 123753 6474482 ~ 6526317 (+)
LOC117595843 NA non-coding downstream 142908 6493637 ~ 6494246 (+)
LOC117595844 NA non-coding downstream 143872 6494601 ~ 6497743 (+)
G339279 NA non-coding downstream 175666 6526395 ~ 6527094 (+)
G339290 NA non-coding downstream 228074 6578803 ~ 6645955 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 1562 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1565085 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 1582869 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 1592802 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 1677215 4616324 ~ 4668256 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 253876 6604605 ~ 6616023 (+)
G339324 NA other downstream 360286 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 1889968 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 1932231 8282960 ~ 8285204 (+)
sem1 NA other downstream 2562199 8912928 ~ 8915846 (+)

Expression


Co-expression Network