gabbr2 (gabbr2,LOC107670291,LOC107724329,LOC107710365)


Basic Information

Item Value
gene id gabbr2
gene name gabbr2,LOC107670291,LOC107724329,LOC107710365
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9822703 ~ 10006532 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929439.2
tacgcagcagcagcagcagcagctctcgGAGCAGCAGCGGAATCGCGGACACTCTCATCCGGATCCCTTTGCGCCACCACTCCTGACTTTAATTGCATAAGTGGACTCTCCTATctgagatctctctctctctctctcacacacacacacacatacacctgtgCGCAGACACACAGCGATGCCACTCCTCCGCCACCGGACCGGAATATACTCAGATGTTGAATTTGTATCCATAACAACCGCTCGCGCGAGTAAATCGTAGCGCTTTAGCACGAGCGGTCCTGCGCTCTTCCTGCAGGAGAAGGATGTTTGTACACTCACTCGGCTCCGTTTAAAGGCAGACACACGGATTGAGTGGAAGGCGAGGAGCTGGACGGAACCGAGGGGAAGCTGTGCGGTGTTTATTCACCCTGCCTGCGACTAATTTACGCATCTCAGCTGAGAACTCCAGTGCTGAAGGTCCGCAGGAATTATCcttctctcccctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacgcgcgcgctgCCTCCTCAACCGAAGCGGCTGTGCTACGGAAGCCCTAAACCTTCACTGATCTTTTGATTTTGAATGTATTTCCGTGCTGGGAGATCTGATCAGCCCTGAGCGTCTTCGAGACTGCGATGCCCGGACAGTGAGCAGTTTGCGCGTCGGCTCTTCATCGTGCGCGGTGCAGCATGGCTCCGTGCCGCAGGGGCCGCGGCGGGCGGGAGATTTCGGTCTTTCTGTCCGGATGTCTGCTCCTATCCGCCGCCGCCGCGAAGGTGTGCAACGACTACACGCGGCACAGTGCGGACGCCGCCTGGTCCTCCAAGGACGTGCCGATCATGGTGCTGATGCCGATGAACGAGTCGGCGCTGATGAGCAGCATCAGCCAGGGCATCGAGCCCGCCGTGCAGCTCGCCATCCGGCACATCCGCGAGTCACAGCAGTACTCCTTTTCACTCATCACCAAAATCTACGACACCGAGTGTGACAATGCAAAGGGATTAAGGGCCTTCTTCGACGCAATCTGCTATGGTCCCAAACATTTAATGATCTTTGGAGGAGTGTGTCCTTCAGTGACATCTATTATTGCTGAGTCATTAGAGGGGTGGAACCTGGTGCAGCTATCTTTTGCCGCAACGACGCCAGTCCTGGCAGATAAGAAGAAGTACCCTAACTTTTTCAGGACAGTTCCTTCAGACAACGCGGTCAATCCAGCTGTTGTGAAGTTCCTCAACTACTACAACTGGAGCAGAGTGGGGACCCTGACTCAGGACGTCCAGAGGTTCTCGGAGgTGCGCAATGATTTGACCAATGAGCTTGAGAAGGCAGATATCCAGATAGCAGACACTGAGAGTTTTTCTAATGATCCCTGTGTTAATGTGAAGAAACTGAAGGACAATGATGTGAGGATCATCATTGGTCAGTTTGATGAGAACTTGGCCTCTAAAGTCTTCTGTTGTGCATATAACCTGAACATGTATGGCAGTAAGTATCAGTGGATCATTCCAGGATGGTACCAAGGCAATTGGTGGGAACAGGCCAACTCTACCAACTGCACCACCAAGAAACTGCTTACTGCTATGGAGGGGTACATAAGTGTGGACTTCGAGCCTCTCAGTGCCAAACGGATTAAAGGAATCTCTGGAAGGACACCCCAAGAGTATGAGCGGGAGTACAGCAGAGAGCGGGAGCAAAAAGGAGTGGAGGCCAGCAAATTTCACGGTTTTGCCTACGACGGTATCTGGGTGATTGCTAAGACACTAAGCCGTGTTATGGAGCTGCTCCGTCAGAAGCAGAGGCATGACATTTACCATAACATGACCATGGATGACCAGGAGGTGGGAAAGTTAGTGCTGGATGTGATGAACGAAACCAACTTCTTCGGAGTGACGgGTCAGGTGATGTTCAGGAATGGAGAGCGCATGGGAACCATCAAATTCACACAGTTTCAAGAGGGCCAGGAAGTAAAGGTTGGGGAGTACAATGCCATCGCTGACATCCTGGACCTTATCAACAACACCATCAGGTTCCAAGGTGTGGAGCCTCCCAAAGACCGGACGTTTGTGCGTCTAGAGAGACGCCATATCAACGTGCCGCTTTACAGCATCCTGTCCACCATCACTATCCTGGGCATGCTCATGGCAGGCGCCTTCCTCTTCTTCAACATCAAAAACCGAAACCACAGGCTGATCAAAATGTCCAGTCCTTACATGAACAACCTGATCATCCTCGGAGGCATGCTGTCCTACGCTTCCATCTTCCTCTTTGGCCTGGATGGCTCCTTTGTCTCAGACCAAGCGTTCGAGACCTTGTGCACTGTTCGCACGTGGATCCTCATCGTGGGTTACACAACAGCGTTTGGAGCCATGTTTGCTAAGACCTGGAGAGTACATGCCATTTTCaagaatgtaaaaatgaagaagaagATTATCAAGGACCAGAAGCTGCTGATCATTGTGGGAGGAATGCTGCTAATTGATCTGTGCATTCTCATATGCTGGCAGATTGTGGATCCCCTGAAGAGGACAGTGGAAATGTACAGCTTGGAGGCCGACCCTCAGGGGCGAGACATGGCTATCCGGCCCTTCCTGGAGCACTGTGAGAACACACATATGACTATTTGGCTTGGGATCGTCTATGCCTACAAAGGTCTCCTTATGTTGTTTGGTTGTTTCCTGGCCTGGGAGACGAGGAATGTCAGCATCCCTGCTCTGAATGACAGCAAGTACATCGGGATGAGTGTGTACAATGTGGGAATCATGTGCATCATCGGTGCAGCTGTGTCCTTCCTGACACGGGACCAGCCGAATGTGCAGTTCTGCATCGTAGCCCTGGTCATTATTTTCTGCAGCACTATCACGCTCTGCTTGGTGTTTGTGCCAAAGCTTATCACAATGAGGACAAACCCAGATGCAGCCACCCAGAACCGTCGGCTGAAGTTCACCCAGAACCAGAAAAAAGAAGACTCAAAGACATCCACATCAGTGACCAGTGTTAACCAGACCAACACGTCCCGCCTGGACGGCTTGCAAGCAGACAACCACCGCCTCAGGATGAGGATCACGGAGTTGGATAAGGAGTTAGAGGAGGTGACCATGCAGCTTCAGGACACACCAGAGAAGACTCCCTATATCAAACAGAACCACTACCAGGACGTCAACAACATTCTGAGCATACGCAACTTCACAGACAGCAAAGaTGGTGAGAAAACTGTTTTGAAAAATCATTTGGAGCAGAAACCACAAGCACTGAGGGGATCCATGGATCCTTCTAGGATAAGCAGAGGCCCACTAGAGGACATAAACTCACCAGAACACATACAGCGCAGGCTGTCTTTGCAGCTGCCCATCCTGCACCACGCCTACTTACCCTCCATAGGAGGAGTGGACGCCAGCTGCAGTCCCAACAGCAGCCCAGCCTCAAGTCCCCGCCACAGACACATGCCCCCCTCCTACAGGGTCATGGTCTCTGGCCTGTGAGTCCTACCACAGCTCTGCGCTCTGAGGAACAGATCTCCGTTTGAAATCAAACAGACTGAGCCACATCAGCAATGAACggaagtgtgtgagtgacctAGGGGGGGTCCTCCTCGTACATACATCCACGACCCTCCTCCCATCTACGTCTACGTCAGAACAAAACTGATC
>XM_034298365.1
ATTAAGCTGATCTAAACTTATGAACTATGAATTTGAACCATCTTGGAATGGCCCAATTAGCCAATCAGCTGCTTCTCTTATGAACCATTCATTGTCCACTAtcttggaaaaaaaactgacttgTACATCATTTGGTGTGAGATATGTTTGGATGGCATGGAAGCATAGGACAGGACCTGAAACTATGTGACAATGCAAAGGGATTAAGGGCCTTCTTCGACGCAATCTGCTATGGTCCCAAACATTTAATGATCTTTGGAGGAGTGTGTCCTTCAGTGACATCTATTATTGCTGAGTCATTAGAGGGGTGGAACCTGGTGCAGCTATCTTTTGCCGCAACGACGCCAGTCCTGGCAGATAAGAAGAAGTACCCTAACTTTTTCAGGACAGTTCCTTCAGACAACGCGGTCAATCCAGCTGTTGTGAAGTTCCTCAACTACTACAACTGGAGCAGAGTGGGGACCCTGACTCAGGACGTCCAGAGGTTCTCGGAGgTGCGCAATGATTTGACCAATGAGCTTGAGAAGGCAGATATCCAGATAGCAGACACTGAGAGTTTTTCTAATGATCCCTGTGTTAATGTGAAGAAACTGAAGGACAATGATGTGAGGATCATCATTGGTCAGTTTGATGAGAACTTGGCCTCTAAAGTCTTCTGTTGTGCATATAACCTGAACATGTATGGCAGTAAGTATCAGTGGATCATTCCAGGATGGTACCAAGGCAATTGGTGGGAACAGGCCAACTCTACCAACTGCACCACCAAGAAACTGCTTACTGCTATGGAGGGGTACATAAGTGTGGACTTCGAGCCTCTCAGTGCCAAACGGATTAAAGGAATCTCTGGAAGGACACCCCAAGAGTATGAGCGGGAGTACAGCAGAGAGCGGGAGCAAAAAGGAGTGGAGGCCAGCAAATTTCACGGTTTTGCCTACGACGGTATCTGGGTGATTGCTAAGACACTAAGCCGTGTTATGGAGCTGCTCCGTCAGAAGCAGAGGCATGACATTTACCATAACATGACCATGGATGACCAGGAGGTGGGAAAGTTAGTGCTGGATGTGATGAACGAAACCAACTTCTTCGGAGTGACGgGTCAGGTGATGTTCAGGAATGGAGAGCGCATGGGAACCATCAAATTCACACAGTTTCAAGAGGGCCAGGAAGTAAAGGTTGGGGAGTACAATGCCATCGCTGACATCCTGGACCTTATCAACAACACCATCAGGTTCCAAGGTGTGGAGCCTCCCAAAGACCGGACGTTTGTGCGTCTAGAGAGACGCCATATCAACGTGCCGCTTTACAGCATCCTGTCCACCATCACTATCCTGGGCATGCTCATGGCAGGCGCCTTCCTCTTCTTCAACATCAAAAACCGAAACCACAGGCTGATCAAAATGTCCAGTCCTTACATGAACAACCTGATCATCCTCGGAGGCATGCTGTCCTACGCTTCCATCTTCCTCTTTGGCCTGGATGGCTCCTTTGTCTCAGACCAAGCGTTCGAGACCTTGTGCACTGTTCGCACGTGGATCCTCATCGTGGGTTACACAACAGCGTTTGGAGCCATGTTTGCTAAGACCTGGAGAGTACATGCCATTTTCaagaatgtaaaaatgaagaagaagATTATCAAGGACCAGAAGCTGCTGATCATTGTGGGAGGAATGCTGCTAATTGATCTGTGCATTCTCATATGCTGGCAGATTGTGGATCCCCTGAAGAGGACAGTGGAAATGTACAGCTTGGAGGCCGACCCTCAGGGGCGAGACATGGCTATCCGGCCCTTCCTGGAGCACTGTGAGAACACACATATGACTATTTGGCTTGGGATCGTCTATGCCTACAAAGGTCTCCTTATGTTGTTTGGTTGTTTCCTGGCCTGGGAGACGAGGAATGTCAGCATCCCTGCTCTGAATGACAGCAAGTACATCGGGATGAGTGTGTACAATGTGGGAATCATGTGCATCATCGGTGCAGCTGTGTCCTTCCTGACACGGGACCAGCCGAATGTGCAGTTCTGCATCGTAGCCCTGGTCATTATTTTCTGCAGCACTATCACGCTCTGCTTGGTGTTTGTGCCAAAGCTTATCACAATGAGGACAAACCCAGATGCAGCCACCCAGAACCGTCGGCTGAAGTTCACCCAGAACCAGAAAAAAGAAGACTCAAAGACATCCACATCAGTGACCAGTGTTAACCAGACCAACACGTCCCGCCTGGACGGCTTGCAAGCAGACAACCACCGCCTCAGGATGAGGATCACGGAGTTGGATAAGGAGTTAGAGGAGGTGACCATGCAGCTTCAGGACACACCAGAGAAGACTCCCTATATCAAACAGAACCACTACCAGGACGTCAACAACATTCTGAGCATACGCAACTTCACAGACAGCAAAGaTGGTGAGAAAACTGTTTTGAAAAATCATTTGGAGCAGAAACCACAAGCACTGAGGGGATCCATGGATCCTTCTAGGATAAGCAGAGGCCCACTAGAGGACATAAACTCACCAGAACACATACAGCGCAGGCTGTCTTTGCAGCTGCCCATCCTGCACCACGCCTACTTACCCTCCATAGGAGGAGTGGACGCCAGCTGCAGTCCCAACAGCAGCCCAGCCTCAAGTCCCCGCCACAGACACATGCCCCCCTCCTACAGGGTCATGGTCTCTGGCCTGTGAGTCCTACCACAGCTCTGCGCTCTGAGGAACAGATCTCCGTTTGAAATCAAACAGACTGAGCCACATCAGCAATGAACggaagtgtgtgagtgacctAGGGGGGGTCCTCCTCGTACATACATCCACGACCCTCCTCCCATCTACGTCTACGTCAGAACAAAACTGATC

Function

symbol description
gabbr2 Predicted to enable G protein-coupled GABA receptor activity. Predicted to be involved in gamma-aminobutyric acid signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of G protein-coupled receptor heterodimeric complex. Is expressed in nervous system. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 59 and nicotine dependence. Orthologous to human GABBR2 (gamma-aminobutyric acid type B receptor subunit 2).

NR:

description
PREDICTED: gamma-aminobutyric acid type B receptor subunit 2

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004965 G protein-coupled GABA receptor activity molecular_function

KEGG:

id description
K04615 GABBR; gamma-aminobutyric acid type B receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929439.2 True 3686 mRNA 0.52 19 9822703 10006532
XM_034298365.1 False 2849 mRNA 0.49 19 9865264 10006532

Neighbor

gene id symbol gene type direction distance location
LOC113536234 NA coding upstream 16599 9804036 ~ 9806104 (+)
galnt12 galnt12,LOC108425758,LOC107724331,LOC107670286 coding upstream 21619 9782215 ~ 9801084 (+)
poc1bl LOC108257092,LOC103026965,LOC108425761,LOC102236136 coding upstream 42992 9761655 ~ 9779711 (+)
pex1 pex1 coding upstream 204678 9604471 ~ 9618025 (+)
efcab1 efcab1 coding upstream 222354 9597569 ~ 9600349 (+)
abitram fam206a,LOC107710376,LOC107556369,LOC107556344 coding downstream 35892 10042424 ~ 10047887 (+)
ccn4a wisp1,LOC108425715,LOC107670277,LOC107724346 coding downstream 141117 10147649 ~ 10154191 (+)
wdyhv1 wdyhv1 coding downstream 181161 10187693 ~ 10190316 (+)
angpt2b LOC108256759,LOC108425532 coding downstream 590884 10597416 ~ 10620173 (+)
LOC113536281 NA coding downstream 1050573 11057105 ~ 11078437 (+)
G341038 NA non-coding upstream 91734 9728928 ~ 9730969 (+)
G340967 NA non-coding upstream 153475 9627788 ~ 9669228 (+)
LOC113536134 NA non-coding upstream 257177 9557697 ~ 9565526 (+)
G340687 NA non-coding upstream 575655 9246479 ~ 9247048 (+)
LOC113536151 NA non-coding upstream 641489 9174943 ~ 9181214 (+)
G341468 NA non-coding downstream 391678 10398210 ~ 10398409 (+)
G341469 NA non-coding downstream 392421 10398953 ~ 10399867 (+)
G341449 NA non-coding downstream 430872 10437404 ~ 10458143 (+)
LOC117595845 NA non-coding downstream 439796 10446328 ~ 10447955 (+)
LOC113536353 NA non-coding downstream 442904 10449436 ~ 10454792 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 593065 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 688524 9119014 ~ 9134179 (+)
sem1 NA other upstream 906857 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 1537499 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 1551204 8240697 ~ 8271499 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 187215 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 467951 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 1285759 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 1307998 11314530 ~ 11473323 (+)
sostdc1b LOC108257373 other downstream 1803577 11810109 ~ 11815273 (+)

Expression


Co-expression Network