efcab1 (efcab1)


Basic Information

Item Value
gene id efcab1
gene name efcab1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9597569 ~ 9600349 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929443.2
GTCAACATCCCGAGTTGGCGAGCGTGCGCTATTAGCAAGTCAGAGATGTCTGCGCTGAGCAGGAAGTTAATCCAAAACTTGGCTGAAACTCTGTCTAAACAAGTTAAACACTTTAATAAAACTGAAGCGGAGTGCCTGATCCGACTGTTTAACACACTGCTAGGAGAACAGACTGAGAGGAAAGCGGCTCATGGACTGGACCGGGGCAAATTCCGCAACATCCTGCACAACACATTTGGACTGACCGATGATATGATTATGGACCGAGTGTTTCGTGCCTTTGACAAGGACAACGATAGCTACATCAGTGTTAAAGAGTGGATAGAAGGACTAGCGGTCTTCCTCCGAGGGACACtggatgagaaaataaaatTCTGTTTTGACGTTTTTGACCTGAATGGGGACGGCTACATATCTCGGGAGGAAATGTTCCACATGCTGAAGAACAGCCTGATAAGACAGCTGACTGAGGAAGACCCAGATGAAGGAATTAAGGACCTTGTGGAAATAATACTAAAGAAAATGGATTACGACCACGACAGCAGACTTTCATATTCAGACTTTGAAAAGGCTGTGAGGGATGAAAATCTGTTATTAGAGGCTTTTGGATCTTGTCTTCCTGACAGAAagagCATACAGGCATTTGAGCAACATGCATTCCAGGATACACTGAGGGCCTGAATCACTCAATGAACAAATTCACAACAAGGTTTTAAAACCAAATGCAGCTCCTGTTCAACATGTTACTCCATAGGAATTGTTAGAATGTGATTAAATTCTTCTCCGAG

Function

symbol description
efcab1 Predicted to enable calcium ion binding activity. Involved in cilium movement. Orthologous to human EFCAB1 (EF-hand calcium binding domain 1).

NR:

description
EF-hand calcium-binding domain-containing protein 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929443.2 True 788 mRNA 0.44 6 9597569 9600349

Neighbor

gene id symbol gene type direction distance location
LOC113536235 NA coding upstream 3037 9580915 ~ 9594532 (+)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776 coding upstream 281618 9263761 ~ 9315951 (+)
tfpi2 NA coding upstream 342090 9252106 ~ 9255479 (+)
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding upstream 544239 9034462 ~ 9053330 (+)
dlx5a dlx5,dlx5a,LOC107670186,LOC106570474 coding upstream 723127 8872595 ~ 8874442 (+)
pex1 pex1 coding downstream 4122 9604471 ~ 9618025 (+)
poc1bl LOC108257092,LOC103026965,LOC108425761,LOC102236136 coding downstream 161306 9761655 ~ 9779711 (+)
galnt12 galnt12,LOC108425758,LOC107724331,LOC107670286 coding downstream 181866 9782215 ~ 9801084 (+)
LOC113536234 NA coding downstream 203687 9804036 ~ 9806104 (+)
gabbr2 gabbr2,LOC107670291,LOC107724329,LOC107710365 coding downstream 222354 9822703 ~ 10006532 (+)
LOC113536134 NA non-coding upstream 32043 9557697 ~ 9565526 (+)
G340687 NA non-coding upstream 350521 9246479 ~ 9247048 (+)
LOC113536151 NA non-coding upstream 416355 9174943 ~ 9181214 (+)
G340592 col1a2,LOC107722140,LOC107667770,LOC107731699,LOC107669816 non-coding upstream 420435 9157458 ~ 9177134 (+)
G340596 NA non-coding upstream 449276 9147811 ~ 9148293 (+)
G340967 NA non-coding downstream 27439 9627788 ~ 9669228 (+)
G341038 NA non-coding downstream 128579 9728928 ~ 9730969 (+)
G341468 NA non-coding downstream 797861 10398210 ~ 10398409 (+)
G341469 NA non-coding downstream 798604 10398953 ~ 10399867 (+)
G341449 NA non-coding downstream 837055 10437404 ~ 10458143 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 367931 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 463390 9119014 ~ 9134179 (+)
sem1 NA other upstream 681723 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 1312365 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 1326070 8240697 ~ 8271499 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 593398 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 874134 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 1691942 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 1714181 11314530 ~ 11473323 (+)
sostdc1b LOC108257373 other downstream 2209760 11810109 ~ 11815273 (+)

Expression


Co-expression Network