sall3b (LOC108256805,LOC107090828)


Basic Information

Item Value
gene id sall3b
gene name LOC108256805,LOC107090828
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 7522930 ~ 7531501 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929450.2
TCCAAAGTCCGCGCTTCATTTGCATATCCCGCGCGGCCCGTCTGGAAAGCAGCCAATCCCAGCGCGCGCGCGCAGGCCGGCTTTACTCCTGATGCGCGAGCCTGTATCATCATCAGACCTCCGCCATGCGCAAACCGCGCAGCGCTGACACCATCTAACATCCCACAGCCCCGAGCACCCGCCGAGCCGCCGCCGTGCGTCTGTCCCCACGCGCCGCGTCCGCCACCGATGCGCGGGCGCACGAACCGAACAGGATGTCCCGGCGCAAGCAGGCCAAGCCTCAGCACGTTACCGCGGGAGAGGAGAAGGAGCAGCGCGGGAGAGGCGCGGAGAGCGTGCTCTTGAGTAAAGGTGCCAGTGAAGAGAGTGGCAGTGAGAGCCGCAGCGGGAATGAGGAGACTCTTGTCTGTAAGACATGTTGTGCTGAATTTTTCAACTGGTCAGAGTTGCTGGAGCACCAGAATAAGTGCACTGAGGAGCCTTCTGTGCTCATTGTACAGGAGGATGAAAGATTTCCTTCCCCTCAGGGATCTCCTACGGAATCCTTCTTAAGTGCTCATAGTGACCCAGCTGAAACTGAGAACATGGAACCTGAGTCTGAATCGTCtgagaaaggagaagaaaatgtCAGTCTTCCTGAAGAAAATTATGCAGCCGGAGCAGATGACCCTATGGATACTACCGCACCTGTGGATAAAATATCAAACCCCAGCCCTCTTCCACCAGACTCCAGTGAAAGCACCATTCCTCTACCTTTATCATGTCTAAGCACAAACTATGGCATTCCCAGTACGAATGTAACCTTGGAGATCCTCCATAGTACCAGGGTGGCAGTTGCACAGTTTTCCCAAAGTATCCAAGGTGATGGATCTGGAGGTAAGGCGAGCTCCGTGGCAATACCTATGATTTTGGAACAGCTAATGGctttacagcagcagcaggtccACCAGCTGCAACTCATTGAACAGATCCGCAATCAGGTCGCCGTGATGAACAGGCAACCAACACAAGCTGCCCTAAACCCAGCCTCAAAGGcatttccctctgtctcttgcACTTACCATTTCCAGGGCATGGCCCCTCCTCCTGTACTTCCATTATCTGGAGTCATTCCTTCCACAGTGAATGGGCAGGCTTCTGTGTCCCAGGCAGCCAGGCAGGAAGGCCCGTCATTTCGGGTATCACAGCAACATAATGAACAATCCAATCCCAGAGAAAATGATAGTACCCCCATTTCCCTAGCAAACCCAAATGCTCCTCTATCTACATATACTGGGGTGTCTGCTTTATTGCCATCCTGCAATGGTGCTCTCTCTAATGCTAGTAATACCCAACCTATGAGCTCTCCTCATCCCCATTCAATAAGCCAGAGCAATGTTATCAACACTTCTGCCAACTTACCACTGCTACCTCAAAGCCCTCCTAGCGGAGTCATCTTCCCAAACCCACTTGCCAGCATTGCAGCCACTACCAATGCACTAGAACCACTTGCTTCTATGATAAAGCATCGCAAAGGTAAAATGCCTAATGCCTCCATATTTGAAACCAAGCCCAGCTCTGAGGACCCCTTTTTCAAACACAAATGCAGGTTCTGTGCCAAGGTATTTGGCAGTGACAGTGCCTTGCAGATCCACCTGCGATCTCACACAGGTGAGAGGCCCTTCAAATGTAACATATGTGGCAACCGTTTCTCCACTAAGGGAAACCTGAAAGTTCACTTCCAAAGGCACAAAGACAAATACCCACATGTACAGATGAATCCATACCCAGTGCCAGAATATCTTGATAATATTCCAACAAGCTCTGGTATTCCCTATGGGATGTCTTTTCCTCCAGAGAAAGCAGGGTCAACATGGTTAGAGAGCAAACCTATTCTACAGGCATTACCTCCTAGATTGGGTCTGCAGTTACCCCCAACAGTAACAAGTGTGGAAAACATCAGTGATTCCTTTAGTAATGCACCCACAGGAAGATCTCCACAAAGGTCCTCACTAGCTAGAAATGAAAGTACACCATTGTCTCCAAATGTCACTAGTACTGAAAAAGATATTCCTATACAGTCTGACAGCCAATTACATACGCCTAAGGTGGCTGGGTGCCTCCAGTTAAGCAAGGAAGCAGGGACCACAACAGTTTCAAAAACTGATGAAATTTACCTTCCCACAAACTGTGTGACTGATCCAGCTGAAAATATCATCTCTGCAAGTCACAACATTCTTTCAAAATTTCCATCAGCAGAAATACCAGTTAGAGCAAATACACCAGAGTCCACTGATGTGATTACCCCAGTGATGAAATCTTCTACTCCTTCTCAAATCTCAGAGCACATTAAAGCCAGATTTCCACTCAGTGGAGTCCAAGAATCTATGCAGACATCTGAAACATCAAAGCTCCAGCAACTTGTGGAGAACATTGACAAAAAGATGATGGACCCCAATCAGTGCGTGATCTGCCACCGAGTGCTCAGCTGTCAGAGTGCACTTAAGATGCATTATCGAATTCACACTGGTGAGAGGCCCTTTAAATGTAAGGTGTGTGGCCGTGCCTTCACTACAAAAGGCAACCTGAAGACTCACTTTGGCGTCCACCGTGCCAAGCCTCCTCTTCAGGTTCAGCACTCCTGTCCAATATGTCAGAAGAAAttcactaatgctgttgtgttacagcagcacaTTCGCATGCACATGGGTGGCCAGATTCCCAATAACCTCCAAACTCTCCCAACAGATGCTatccaggaaaaaaacaatgactTGATTCTTGAAGAGAAGAGTTTTGACAGTGTgaatgattatgatgatgatggtcttgATGATATTTCATATGAAGAGGaagatatttcagaaaatggtGAAAACCCCCTTAACACTTTATCGGACAGTAGTTCATCACCGATTTCACCATTACCTCATGATGTGTCTGATGTTAGAACATCAGATGGTGACTCAACAGTTAGTCTTAACCAATTAACTGAACACAAGATGATAATGAGTGACATTTTTGACAACCATCCAGATAATGGCTCTCCGTCCACAGGAGAATTAGAGAATCAGAGTATTTTCTTGCCAGAGTCAGCCAACATCATTCATCCACCAACACTGAAACCAACAAAATGTCAGCCTGAGGGTCTACATGACATTCCAGTTTCGCTTAATATTACCTTTGATAAGCAAGAACGAGCAACTACAGTTAAATGTGAAATGTCTGATTCCCCAGCCCCAAATGCAATAAATGGAGCAGTGTACGATCAGATCAGGAAGTCTTTGGTCATGGAGCATGGAGCAAGCCAGAGGTCCCATGATATGGATAATAGCGTACGGGCCCCAGTTAAGATGGAGATGGAAAGTTGCAATAGGCCATACACTCCTAAAGAAGGCCCTTTTCCTGTATTTGGATCTATTCAGTCTTCACCTACGCCCTCTGAAGCAATAATCCCAGGCATGACTTCATTGTTTGGAAGCCCACCACCACGACGAACCCCTAAACAACACAACTGTAATGTATGCGGGAAAAACTTCTCTTCAGCAAGCGCCCTACAAATCCATGAGCGCACACATACTGGTGAAAAACCTTTTGCTTGCTCCATCTGTGGCCGAGCCTTCACAACAAAGGGTAATCTCAAGGTACACATGGGCACTCACATGTGGAATAACATACCTGCACGGAGAGGTAGGCGCTTGTCTGTGGAAAACCCACTGGCTCTTCTAGGTGCTGAGGCTCTCAAATTCAATGAAGTATTCCAGAAGGACCTTGCAACAAGGGCCATGAACATGGATCAGAGCTTTTGGAGTCGATATGCTGTAGCTATTAGCAATGGCTTAGCCATGAAGAACAATGAAATTTCTGTCATTCAGAATGGAGGGGTACCTCAACTTCCTACTGTAGCCATGGACAAGACGAGCAGTGCCAACAGCTCGTCAATCCGAGCCCTTGGGAAAACAAGTGTAGACCTTGCACCTGGACGACACTTCTCCATGTTGATTGATGACAATAAAGAGATTAGAATTAATTAAACTCATGAGAGGTTGGAAATAATCCCGTATGCAAAAAGACACATGGAGAATAAAACAGACGCTGCAGTATGTACCTGATGACTTTCAACTGTATATAAATTTACAATGTTGTCTTTTTCTATTGACTGGTttagttgtttttctttctgataTGTTTAAAgccagacaaaacaaaaaagccagACATAACAAATAACTCCATAAAAGTCAGACAAAACAAATAACCATAACGCAGTGGTAGTATGGTACTGCATGTGGACAATCAGTCACCAGCAGTAATACAAACTGCAACTTACCTGCAAATTACATTTGATTTGAATTTTGTATCAACCACAATTTAGCTAAGGGAATAcaaaatcaaattatttttattgtatgatcTTGAACTAGATACCACTGAAAGTAATGTTATGTTCAGTATGTCATTCTCCTCCATGTTAAAGGTactctttgggttttttttatcaggATAAAGCAATGGCTTTGTTGTGAAGCTGAAAAGGTTTTGATAAAGATATcagtttgctgttataaaatagCCCACTAGTGTCATTGCCATGAAGTAGAATATTCTTAAAGATATATTCTCTAGTTGCAATTTTgacaaataatcaaaaataaaaagacttaaCTGTATACATATAGATTAatcttttgtatttattataaggAATTTGTATTGCCATTtctctatgatttttttttcacagagaaTAAAATGCAATGGGTTTAAATTA

Function

NR:

description
PREDICTED: sal-like protein 3

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K19871 SALL; sal-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929450.2 True 4750 mRNA 0.45 4 7522930 7531501

Neighbor

gene id symbol gene type direction distance location
galr1a galr1a,galr1,LOC108256854,LOC107697195,LOC107592101,LOC103037936,LOC108429058 coding upstream 45268 7474707 ~ 7477662 (+)
tshz1 tshz1,LOC108257250,LOC108429095,LOC107748691,LOC107592027,LOC107696938,LOC107739558,LOC107688322 coding upstream 244790 7236100 ~ 7278140 (+)
cndp2 cndp2,LOC107748690,LOC107696911,LOC107739559,LOC107688323 coding upstream 514019 6995313 ~ 7008911 (+)
LOC113536346 tuba4l,LOC108256914,LOC108437766,LOC107669576,LOC107564211 coding upstream 747395 6773319 ~ 6775535 (+)
rplp1 rplp1 coding upstream 856577 6664093 ~ 6666353 (+)
atp9b atp9b,LOC107656641,LOC107563702,LOC107697002 coding downstream 2539 7534040 ~ 7580421 (+)
nfatc1 nfatc1,LOC107739553,LOC107656600,LOC107563708 coding downstream 61125 7592626 ~ 7636971 (+)
fbxl6 fbxl6 coding downstream 124204 7655705 ~ 7664305 (+)
trhrb LOC108256856,LOC108441692 coding downstream 339376 7870877 ~ 7877775 (+)
pkhd1l1.1 pkhd1l1 coding downstream 389931 7921432 ~ 7971682 (+)
G339721 NA non-coding upstream 55284 7449750 ~ 7467646 (+)
G339700 NA non-coding upstream 123860 7395074 ~ 7399070 (+)
G339661 NA non-coding upstream 272515 7247820 ~ 7250415 (+)
G339659 NA non-coding upstream 289823 7232884 ~ 7233107 (+)
G339618 LOC108429093 non-coding upstream 563646 6953062 ~ 6959284 (+)
G339804 LOC108256927,LOC108262328,LOC108441690 non-coding downstream 141479 7672980 ~ 7674655 (+)
LOC113535942 NA non-coding downstream 233252 7764753 ~ 7772456 (+)
G339830 NA non-coding downstream 282131 7813632 ~ 7813864 (+)
G339965 NA non-coding downstream 357203 7888704 ~ 7889014 (+)
G340047 NA non-coding downstream 466582 7998083 ~ 7998288 (+)
G339324 NA other upstream 805784 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 906907 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 1179021 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 2742544 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 2760328 4757814 ~ 4762602 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 709196 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 751459 8282960 ~ 8285204 (+)
sem1 NA other downstream 1381427 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 1587513 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 1693103 9224604 ~ 9229638 (+)

Expression


Co-expression Network