chrac1 (chrac1,LOC107591666,LOC107580926,LOC107722130)


Basic Information

Item Value
gene id chrac1
gene name chrac1,LOC107591666,LOC107580926,LOC107722130
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8839251 ~ 8843118 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929455.2
TTTGAAAACCTGATGACGTACTTCCGCTAAACTGGACAACTTTCAGAAAAGATGGAGAACAAAGTTGAGCGTGCGGCTAATGGCAAAAACGTCTCTCTCCCTATTTCACGTGTAAAATTAATCATGAAGAGCTCTCCGGATGTGTCGTGTATTAATCAGGACGCCCTTTTCTTAACGACCAAAGCGACGGAGCTTTTTGTCCAGCACTTGGCTTTGACCTCATACAATAATGGCTCAGGAAAACAGAATGGCACCCTGTCCTACAGCGATCTGGCTAACACTGCAGAGGAGACAGAAACGTTCCAGTTTCTCACAGATATTCTTCCAAAGAAAATCTTGGCTAGGGATTATCTGAAGTCCCTGGAGAAAATGGAAGCGGAAGAAGAaaactgattttgttttttttggggggggaaGCCCATAAGCAGTATCTGTTACTTCAACATCATTCTTAAAAATTGTTTGATGATAACACAATGTGAacaggtagaaaaaaaaaagaatagtttcCTCACAGCAGATAGCAGGAGATGAACTCCAGGGCATCTCATCCAAATGAATATGTACAGTTACATTTCAAGTGGTGACGtacagtttttttgttgttttgtatttgGATATGTAGTGGCCTGATCACCACCAAACTACCTGTAGCTCACAGCAAACTGCAAGGCAGAGTGGCCACTTTAAgtgtttcatctgtttatttatgttgtATAGCTGTTGATTTGCTCCTACAGCTCTTGCATTTTTGGTCACAAGTGGCTCAGATTCTGAAATTACAGCTGCTTTAAAAGCAGTTACTCAGGGTGTACACACTGTTTCATTAAATGGGCATTAAGatgtcaatattttttttattatacaccTGAAGATAAAAACTGTCTCGCTCTTATTGTGCAGACTGTGAAATAAATACTtacaactgattttttttttttttgcatgtaacTGCAATGATATGTTTGTTTGAAATCTGTGTTAATCAAAAAGATGCACGGACATCCTGCAGGTTTAATCACAGTGTCCTTTACTGTAGATCAGAATTGAGTATACCACTTTTCTGCTGTTTCAGCTGATGACATGCACTGAATTTCAAAGTTGTGAGTCTTTATACTTGAAATTTGTGTAACAGCTTAAGTTTTGTATAGTGTACTGTATGATTTTTGGTGTAtatttttcagtaaataaatcttTGCTTTCTTATTT

Function

symbol description
chrac1 Predicted to enable protein heterodimerization activity. Acts upstream of or within primitive erythrocyte differentiation. Predicted to be part of CHRAC. Predicted to be active in nucleus. Orthologous to human CHRAC1 (chromatin accessibility complex subunit 1).

NR:

description
PREDICTED: chromatin accessibility complex protein 1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11656 CHRAC1, CHRAC15; chromatin accessibility complex protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929455.2 True 1209 mRNA 0.38 3 8839251 8843118

Neighbor

gene id symbol gene type direction distance location
c23h6orf62 c24h6orf62,cunh6orf62,zgc:111986,LOC103042486,LOC107555566,LOC107724342,LOC107702127,LOC107743835 coding upstream 14426 8820384 ~ 8824825 (+)
ripor2 fam65b,LOC107555568,LOC102779249 coding upstream 24282 8767996 ~ 8814969 (+)
si:dkeyp-120h9.1 si:dkeyp-120h9.1,LOC108257412,LOC106570559 coding upstream 89025 8737159 ~ 8750226 (+)
hey1 hey1,LOC107584259,LOC107702120 coding upstream 120681 8714493 ~ 8718570 (+)
zbtb10 zbtb10 coding upstream 178660 8645520 ~ 8660591 (+)
dlx5a dlx5,dlx5a,LOC107670186,LOC106570474 coding downstream 29477 8872595 ~ 8874442 (+)
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding downstream 191344 9034462 ~ 9053330 (+)
tfpi2 NA coding downstream 408988 9252106 ~ 9255479 (+)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776 coding downstream 420643 9263761 ~ 9315951 (+)
LOC113536235 NA coding downstream 737797 9580915 ~ 9594532 (+)
G340297 NA non-coding upstream 170469 8668579 ~ 8668782 (+)
G340257 NA non-coding upstream 222210 8613486 ~ 8617041 (+)
G340248 LOC108256763,LOC108425228,LOC103022454,LOC106515840,LOC107724303,LOC107087831,LOC107584252 non-coding upstream 347337 8489679 ~ 8491914 (+)
G340197 NA non-coding upstream 427893 8399218 ~ 8411358 (+)
G340146 NA non-coding upstream 601299 8233867 ~ 8237952 (+)
G340336 LOC108256786 non-coding downstream 1156 8844274 ~ 8845684 (+)
G340339 NA non-coding downstream 7850 8850968 ~ 8859663 (+)
LOC117595890 NA non-coding downstream 32839 8875957 ~ 8891060 (+)
G340517 NA non-coding downstream 73488 8916606 ~ 8917800 (+)
LOC117595810 NA non-coding downstream 119819 8962937 ~ 8966727 (+)
G340208 LOC108256789 other upstream 554047 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 567752 8240697 ~ 8271499 (+)
G339324 NA other upstream 2122105 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 2223228 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 2495342 6333989 ~ 6343909 (+)
sem1 NA other downstream 69810 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 275896 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 381486 9224604 ~ 9229638 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 1350629 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 1631365 10474483 ~ 10481970 (+)

Expression


Co-expression Network