LOC113535910 (LOC108257332,LOC108257205,LOC108261620)


Basic Information

Item Value
gene id LOC113535910
gene name LOC108257332,LOC108257205,LOC108261620
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5502234 ~ 5511202 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929473.2
GCGGTTTACTCATCATCCACTGCTGGTGCTGAACGATTTTTCCCTGGAGCATGTGCCAttcaaaaagaagaaaatttctTCTCGAAAGATGACTTTAGGTGCTAAATCTCTGCTAGCAAGAAGTTTGGAGGGAAAAGGGGTAAAATTAAAGTATTAAGAACGATTTTGAGCTAGACAGTAGTAGGAGGAGCtatgaattaaagaatgaaacaaatgagaAAGGATCAGGGAAAAGAATCATGAGGATCACAAAGTCTGATGAAGCACAGACAAAGACGAAAGATAGGCTAAGCCATTAAAGCAGACCTGagtggagaacatgcaaaggagaaagaagaataaagagaaAAGGTGAAGGAGCAATTGATGCTGAGATAAAACCTGAACCAGGATCTACACATCAGTGGATGAGCTAGCAGAATTCGACCTGCTGGTGGCAATGATGTCAAATGTTTCTCCTGAGTGAATGAAACATTCCTACTTATTCCTACTTCCTACTACAGCCATGAAAAGATGATATTCTCtctaaaattatacaaatttatattatacatttcttGCATTTTCAGTACTAAATAATTTAGTTTTTCATAAACTGTTATAATTCTCACTGACTAAATTATTTTCGGTGTCTTATAttagaaaacaaaatgacacatggaaaaaatgtgaacaGAGGAAATGAAAGTCAGACGAAGGCTAAGAGATGTGTTGATATGACGTAAATGTCACACAGGAAAACCTAGGCGTAGGTGCCATGAGCTATCTGTACACAATTTatgaaaagattttgggtgaacTAACGGTCCTACTGGTGAGCAGGGAGACAATTTCATCTATACATTCTCAAGgaGACACCATAAAATATCAGCGAACAtgagcaacagcagcagcagctgtaACAGTAAATTTTCAACAGACCTGTTACCCCCCATCTACGGTGTGGAAATGAGTGTGGCACTGGTGGGGAACATACTGGCACTGTGGCTGCTTGTGACTAAGGAGAAGAAGAACTGGCACACGGGAGTGGTGTTCTCCTGCAACCTGGTCATCAGTGACATTTTGTATGCCCTCACTCTGCCGCTTCTCATGGTCTACTATTCAAGTGGACGGATCTGGAAATTTGGTGATGCTCTCTGCAAAATAGAGCGCTTTCTCTTCACCTGTAACCTCTACGTCAGCATTTACTTCATCATGTGCATCAGTGTTAATAGATACCTGGCCATCGGTCATCCGTTCTTCACACGCAACCATGTGCGACCGAAACATGCCAAGATCATCAGTCTGCTGGTGTGGATCTTAGTGGCAAGCATTTCATCTCCAATCCTCTACTATTCAGGTGtcaagaaagagagatgttCCTTATTTTCAGATTCAGAACATGAATCTAAAAAGTTTATATACAGGGTGTTTATGGCTGTTACGGGCTGTTTGGTCCCATTTGTAGTTACTTTTGCATCCTATTTTGGTGTAATATGGGTGGTTTTCAAAAATGAGAATATCACATctttggagaagaaaaaagtggCTCTGATGGTGGGTTTAGTCTGCGTCCTGTACTCCATGTCTTTTGTCCCCTATCACATTTTGCAAATATGGCACTTTAAactgaagaaggaaaataatattaattgttATGTGCGTAATGGATACCAAGTGTCAAAGGCATTAGCCTGCCTGAACATGTGCCTCCATCCCATCCTGTACATGGCTGTGTTTGACAGTATCAGGGCAGTGTGCTGTAGAAGGAGCTTAAATGAATCTAATTAATCTACTAAatcttttttattctcttagGTTCACCttaaattttaaatacttttttttatggaCTTTTATCTGATGTGCATGACCAACACTGTCTAAATAAAGTAATGGGTGTAATAatggattttttattattttttttttggttaatgtaAGCCTGACTAAGCCATAAACGTTAACTAGTTATTCAGATGTCTGGTCTcattgtaaatatacagtatacgttaatttcaaataaataagtgatgGAAAACA
>XM_026929474.2
aaccctgtcagcTACGTGGATGGAGGGATCCGAACAAGGTATCGCGGGACAGAGAAGTGTAGTCATAGATATCagcttgttaaataaatatgtgactAGTTATTAGAGATTATTTAGTACTATATTAGAGTAGTGTACTCAGTACATTCTTGCTAGTCTTTGGATCTTGTTAATATTTCAGTAGGTATATTATGCTGAGGCATTTCTGTTGAAGCGGCGTGTAACGGTTTCCCGTAGAAAGAAAAAGGAGCCTGTGTACTGAAGGGGAAGGGCTGCAGGTCACATTTActtctgagggttttttttcttttaaccagGTTCTCACATTGCAAGcattctttaattttatatagtAGCACTGAGCTGCgggcaaaataaaaagaagaagaaggaaaatacatgaaaaattgAGGGAAGTAAGAGGTAAAAGgaGACACCATAAAATATCAGCGAACAtgagcaacagcagcagcagctgtaACAGTAAATTTTCAACAGACCTGTTACCCCCCATCTACGGTGTGGAAATGAGTGTGGCACTGGTGGGGAACATACTGGCACTGTGGCTGCTTGTGACTAAGGAGAAGAAGAACTGGCACACGGGAGTGGTGTTCTCCTGCAACCTGGTCATCAGTGACATTTTGTATGCCCTCACTCTGCCGCTTCTCATGGTCTACTATTCAAGTGGACGGATCTGGAAATTTGGTGATGCTCTCTGCAAAATAGAGCGCTTTCTCTTCACCTGTAACCTCTACGTCAGCATTTACTTCATCATGTGCATCAGTGTTAATAGATACCTGGCCATCGGTCATCCGTTCTTCACACGCAACCATGTGCGACCGAAACATGCCAAGATCATCAGTCTGCTGGTGTGGATCTTAGTGGCAAGCATTTCATCTCCAATCCTCTACTATTCAGGTGtcaagaaagagagatgttCCTTATTTTCAGATTCAGAACATGAATCTAAAAAGTTTATATACAGGGTGTTTATGGCTGTTACGGGCTGTTTGGTCCCATTTGTAGTTACTTTTGCATCCTATTTTGGTGTAATATGGGTGGTTTTCAAAAATGAGAATATCACATctttggagaagaaaaaagtggCTCTGATGGTGGGTTTAGTCTGCGTCCTGTACTCCATGTCTTTTGTCCCCTATCACATTTTGCAAATATGGCACTTTAAactgaagaaggaaaataatattaattgttATGTGCGTAATGGATACCAAGTGTCAAAGGCATTAGCCTGCCTGAACATGTGCCTCCATCCCATCCTGTACATGGCTGTGTTTGACAGTATCAGGGCAGTGTGCTGTAGAAGGAGCTTAAATGAATCTAATTAATCTACTAAatcttttttattctcttagGTTCACCttaaattttaaatacttttttttatggaCTTTTATCTGATGTGCATGACCAACACTGTCTAAATAAAGTAATGGGTGTAATAatggattttttattattttttttttggttaatgtaAGCCTGACTAAGCCATAAACGTTAACTAGTTATTCAGATGTCTGGTCTcattgtaaatatacagtatacgttaatttcaaataaataagtgatgGAAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929473.2 True 2022 mRNA 0.39 2 5502234 5511202
XM_026929474.2 False 1601 mRNA 0.39 2 5508288 5511202

Neighbor

gene id symbol gene type direction distance location
LOC113536250 LOC108257204,LOC108257207,LOC108257205,LOC108257203,LOC108257206,LOC108257209,LOC108256855,LOC108261875,LOC108261620 coding upstream 30123 5470562 ~ 5472111 (+)
LOC113536209 LOC108257204,LOC108257205,LOC108257203,LOC108257207,LOC108257206,LOC108256855,LOC108257209,LOC108261875,LOC108261620 coding upstream 34873 5463055 ~ 5467361 (+)
ppan ppan,LOC107711268,LOC107672501,LOC107670430,LOC103392573,LOC105905764 coding upstream 46997 5446993 ~ 5455237 (+)
olfm2a olfm2,olfm2a,LOC107563315 coding upstream 247971 5143226 ~ 5254263 (+)
col5a3a col5a3,LOC107587984,LOC107757338 coding upstream 405961 5014830 ~ 5096273 (+)
eif3g eif3g,LOC107711270,LOC107672439,LOC107754044 coding downstream 1894 5513096 ~ 5520547 (+)
LOC113535991 NA coding downstream 121125 5632327 ~ 5658199 (+)
oxsm oxsm,LOC107655122,LOC107694752,LOC107557465,LOC107566624 coding downstream 153970 5665172 ~ 5669016 (+)
cfap20 cfap20,cp080 coding downstream 158490 5669692 ~ 5674191 (+)
zgc:63863 LOC108256764,LOC108429636,LOC107694745,LOC107566628 coding downstream 193469 5704671 ~ 5726395 (+)
G338799 NA non-coding upstream 69970 5431849 ~ 5432264 (+)
G338683 NA non-coding upstream 110042 5387988 ~ 5392192 (+)
LOC117595846 NA non-coding upstream 116082 5377206 ~ 5386152 (+)
G338658 NA non-coding upstream 260650 5241325 ~ 5241584 (+)
G338246 NA non-coding upstream 771129 4718197 ~ 4731105 (+)
G338814 dnmt1 non-coding downstream 13838 5525040 ~ 5526609 (+)
G338842 NA non-coding downstream 215976 5727178 ~ 5728306 (+)
G338961 NA non-coding downstream 343456 5854658 ~ 5855430 (+)
LOC113536203 NA non-coding downstream 464670 5975872 ~ 5981732 (+)
G339055 NA non-coding downstream 476609 5987811 ~ 5988492 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 721848 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 739632 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 749565 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 833978 4616324 ~ 4668256 (+)
G338163 NA other upstream 1147205 4352522 ~ 4355029 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 822787 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 1093403 6604605 ~ 6616023 (+)
G339324 NA other downstream 1199813 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 2729495 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 2771758 8282960 ~ 8285204 (+)

Expression


Co-expression Network