oxsm (oxsm,LOC107655122,LOC107694752,LOC107557465,LOC107566624)


Basic Information

Item Value
gene id oxsm
gene name oxsm,LOC107655122,LOC107694752,LOC107557465,LOC107566624
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5665172 ~ 5669016 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929494.2
AGCAAATACTAAatcactatgtagtgtgtaatgATAGCGCGAGAGTTACCATAGTTAGACCTGGGAAGTGCAGTAGGCGGATTGAGACACAGCCAGTGTGTTTCACTCCATGTTAGCCGTGTTTAATACAAAGAGTTTATAACTTCCAGGGTGTCAGAGGTGAGAAATGTCTTTGCCGTGTTGGCAGAAGCTGCCGGTGAGGCAGTACACCAGAGTGCTGTCCAACACCAGAGTGCTGCCCTGCatgggtgtacaaacttttgagaGGCATAACAGTGAACATAGCTCTACTAAATGTCTCCGGAGAGTTGTCATTACTGGAATTGGACTTGTGTCTCCACTGGGGACGGGGACGGCTCTGCCCTGGGAGCGTCTGATCGCTGGAGAGAGCGGGATAGTGGCCCTAGACTCAGACGAGTACAAAGCAGTGCCGTGTAAAATAGCAGCTCGGGTTCCCCGAGGACACGGTGAGGGAGAGTTTAAAGAAGAAATGTTTGCATCACGTGGGGAGATAAACAGCATGTCTCAGGCCACGGTGATGGCCCTCGGAGCTGCTCAGCTGGCCCTGCAGGACTGTGGCTGGTTTCCCAGAACCCCCAAGGAGCAGCTGAGCACAGGGGTGGCTGTTGGCATGGGCATGGTGCCACTGGAGGAGATCGCTagcactgctgctgcttttcAGACGCGTGGCTACAGCAAAGTGAGCCCCTTCTTCGTCCCTCGCATCCTGGTCAACATGGCCGCCGGTCACATCAGCATCAAGCACAAGCTGAAGGGACCCAACCATGCTGTGTCCACTGCCTGCACCACGGGGGCTCACGCCATCGGAGACGCCGCCCGCTTCATCAGCCACGGAGACGCCATGGCGATGCTCGCCGGAGGAACCGAGGCTTGTGTCAGCCCCCTGGCCATAGCGGGCTTTGCACGTGCTCGGGCTCTGAGTACCAGCTGGAACGAACAGCCCAAGCTGGCGTCTCGACCGTTTCACCCAGAGCGAGAAGGATTTGTAATGGGCGAAGGAGCAGCCATGCTGGTTCTGGAGGAGTATAAGCATGCCGTAGAGAGAGGAGCCCGGGTTTACGCTGAGGTGCTGGGGTACGGACTCTCAGGAGACGCCAGCCACATCACGGCCCCTTCTGCAGATGGAGATGGAGCTTTCAGGTGCATGTCCGCTGCTCTGCGTGACGCTGGCGTGTCTCCATCAGACGTGACGTATGTGAACGCCCACGCCACCTCTACGCCGCTGGGGGACGCTGCAGAGAACACAGCAGTAAAAAGACTCTTCCATCAGCACTCGCCGTCTCTCGCTGTTTCCTCCACTAAAGGGGCCACGGGGCATCTTCTGGGAGCAGCCGGCGCTCTGGAGGCAGCGTTCACAGCACTCGCATGCTACCACGCAGTCCTGCCTCCGACTCTGAACCTGGACCGAACCGAGCCTGAGTTTGACCTGAACTATGTGCCGTGTGCTGCCCAGCCCTGGAGGACAGCAGGCAGGAGAGTCGCACTCACAAACTCGTTTGGGTTTGGAGGCACGAACGCCTCTCTGTGTCTGGCTAGTGTGTGAGATTTACCGAGTGACGCACTGAAGACTGTCAGCTGTGCTGCCTTCCATTGCAACTCACAACCAGTCAATAGCTTTTTAATAAAGGCTTATGGTCCAACTTTGTTTCTAAGATAAATGTAGAGCTTTTAGCAGTGAAGAGCTCGGCATGTTTAAGAAAAAACTCCTGGGGGAAGGAAGCGCCATTATGACAATGGCTGAGAAGAGTGTGTGAAGCTTCATCAGGAAAAGctagttttgatttgtttaacactgTACTGAGTTACTTCGTATTGtcttaatattattgttaaatattagaaaatagtaaaaatgaaggaaatcCATCTATGAGTGGGGGTGTCATTACTTTTGACTGATGCACTTTATTAATTGATGCCCTGATGATATTTGTAATACTGGAGCAAAACGCTTGGAATTAAAGATATAACAATTA

Function

symbol description
oxsm Predicted to enable 3-oxoacyl-[acyl-carrier-protein] synthase activity. Predicted to act upstream of or within fatty acid biosynthetic process. Orthologous to human OXSM (3-oxoacyl-ACP synthase, mitochondrial).

NR:

description
3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial-like isoform X1

GO: NA

KEGG:

id description
K09458 fabF, OXSM, CEM1; 3-oxoacyl-[acyl-carrier-protein] synthase II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929494.2 True 1997 mRNA 0.53 4 5665172 5669016

Neighbor

gene id symbol gene type direction distance location
LOC113535991 NA coding upstream 6973 5632327 ~ 5658199 (+)
eif3g eif3g,LOC107711270,LOC107672439,LOC107754044 coding upstream 144625 5513096 ~ 5520547 (+)
LOC113536275 LOC108257203,LOC108257204,LOC108256855,LOC108257206,LOC108257209,LOC108257205,LOC108261875,LOC108257208 coding upstream 153970 5473942 ~ 5511202 (+)
LOC113535910 LOC108257332,LOC108257205,LOC108261620 coding upstream 153970 5502234 ~ 5511202 (+)
LOC113536250 LOC108257204,LOC108257207,LOC108257205,LOC108257203,LOC108257206,LOC108257209,LOC108256855,LOC108261875,LOC108261620 coding upstream 193061 5470562 ~ 5472111 (+)
cfap20 cfap20,cp080 coding downstream 676 5669692 ~ 5674191 (+)
zgc:63863 LOC108256764,LOC108429636,LOC107694745,LOC107566628 coding downstream 35655 5704671 ~ 5726395 (+)
slc39a4 slc39a4 coding downstream 258690 5927706 ~ 5944224 (+)
LOC113536255 NA coding downstream 431530 6100546 ~ 6109043 (+)
LOC113536325 NA coding downstream 443085 6112101 ~ 6116707 (+)
G338814 dnmt1 non-coding upstream 138563 5525040 ~ 5526609 (+)
G338799 NA non-coding upstream 232908 5431849 ~ 5432264 (+)
G338683 NA non-coding upstream 272980 5387988 ~ 5392192 (+)
LOC117595846 NA non-coding upstream 279020 5377206 ~ 5386152 (+)
G338658 NA non-coding upstream 423588 5241325 ~ 5241584 (+)
G338842 NA non-coding downstream 58162 5727178 ~ 5728306 (+)
G338961 NA non-coding downstream 185642 5854658 ~ 5855430 (+)
LOC113536203 NA non-coding downstream 306856 5975872 ~ 5981732 (+)
G339055 NA non-coding downstream 318795 5987811 ~ 5988492 (+)
G339126 NA non-coding downstream 447733 6116749 ~ 6128284 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 884786 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 902570 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 912503 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 996916 4616324 ~ 4668256 (+)
G338163 NA other upstream 1310143 4352522 ~ 4355029 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 664973 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 935589 6604605 ~ 6616023 (+)
G339324 NA other downstream 1041999 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 2571681 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 2613944 8282960 ~ 8285204 (+)

Expression


Co-expression Network