LOC113535936 (LOC108270576,LOC108256939,LOC108270587)


Basic Information

Item Value
gene id LOC113535936
gene name LOC108270576,LOC108256939,LOC108270587
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8043612 ~ 8047251 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929524.2
AGGTAGTAAGGTTCTGCAGGGTGTTTGGAGTAGTTGTAACATGGCAGTGAAAACAGGCATAATTTTGTTGTTAGGCTGCATTGAGTTATTTATGGTGCAAGCTTTTATGTTGGGCAGGTTCATGACCGAGTCCTTTGATTATGCTTACCAAAATAATGAAGGCTTCAGTGAAGATGTGTCTGTGCAGTCTGTAGACTCTGATCAGGAGGCTTGGCTCGGACAGCACCAGAAGTATTCTGTCTTTTGTGGTAAAGATGCTGTCAAAGTAGTTTTGCCCTCAGGTCCTCTTTCTGAGGTGAAGGTTTTGGGCTCATCCATTCTGGACCCAGTTCTGGAGGTAACAAAAGAATGTGGCTACTCTCTGACAAAGGAATGGGGGAACAATGTTCTTCATGTCAGCTTCTCTGGTTGTCATGTCACTGTTGAGGAGGGCAGATACACTCTGCGACTGCTGTATCGTAATAACATGGGAACTGCTGAGGTTGCCACAGTGTCATGTGATGCCAACTCTGACGTGGCATTGCGAAAACTCAGGGTCCCTCGATCAAATGGCCAAGGTGACTGTCCACCGGCTCCAATGCCAGAATTGACACCATATCGAAAGCTGCCTCAGAACTATACTAGAGCAGGCTGTGACATTCCTACGACCCAAAGATTGCCCTGTGGTCCTTCTGAAACTACAGCTATTGAGTGCATGAACAAAGGATGCTGCATGGATGTGACTGATTCCTCCTGTTACTATCCAATGGATCAATGTACAGCTGATGGGCagtttgtgtttactgtttactctAATATCACAACTATCCCTGTGAGCCCCACAAGTTTGATTGTGGCAAACAAGGAATCCTGTAAACCTGTCCATGCTACCAATGAATTTGCCATCTTCAAGTTCTCTGTGACTGAATGTGGGACAAAGACTTATAATATTGGCGACACTACCGTTTACATGGCTGAAGTGCGGACAGCCATCAGAGCACTTAACCTCAAGTATGGCGTCATCACCAGAGATCACCCTGTCAGGGTGATGGTTGAGTGTCGATACTCAAAGGTCAGTCCATCAATGATGAGGGCAACTGCTGGCTACATGCTGATGAGCCCAAATGTGCCAGCCACTGTGAGGTCTGGTGGACTATATGGTGTTCAGCTCAGGATTGCAGATGATGAGACCTTCTCTTTGTTCTCCCCACATGGTCATCTGCCCTTGAAGGTTCTCCTGGGTAAACCATTGTACCTGGAAGTGAGAATAAATTCCCCAAAACCTGAGGCCACACTGCTAGTAAACTACTGTGTGGCCTACACACGATCTGCTACAAATGCCTTGGTTCTGCTCTATGAAGGGTGTCCCATCCCTGATCTTTCCTCTGCACAGTCTTCATTCCTCCGTGTACTGGATCTGCCTCAGACTCCTCACCAGCGCCGCTTTGTGGTGACAGCCTTCCAGTTCATGAACGTGACCACTCAAAAATACCTCAATGAGGAGATTTACTTCATGTGCTCCACTGAAGTGTGTATGCCTTCTGAGACTCCATGTCGCAGGACATGCTTTGATGGGAAGgCATAATGGCTTCTTTCCAGTCAAAGGTGGATACTGATTGAGCTTTCAATATATTCAGTATTAAAGTTTCCTTTTTAAACCTCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929524.2 True 1644 mRNA 0.46 11 8043612 8047251

Neighbor

gene id symbol gene type direction distance location
LOC113536206 LOC108256941,LOC108410903,LOC107717718 coding upstream 15572 8020801 ~ 8028040 (+)
gdf6b gdf6 coding upstream 66996 7973556 ~ 7976616 (+)
pkhd1l1.1 pkhd1l1 coding upstream 71930 7921432 ~ 7971682 (+)
trhrb LOC108256856,LOC108441692 coding upstream 165837 7870877 ~ 7877775 (+)
fbxl6 fbxl6 coding upstream 379307 7655705 ~ 7664305 (+)
azin1b azin1b,LOC108256938,LOC108425019 coding downstream 4819 8052070 ~ 8061670 (+)
rrm2b rrm2b,LOC108256937,LOC108425040,LOC107702093,LOC107565196,LOC107556385,LOC107724293 coding downstream 16323 8063574 ~ 8069406 (+)
mtdha mtdh coding downstream 23617 8070868 ~ 8080853 (+)
laptm4b laptm4b,LOC103028646,LOC107724295,LOC107702097,LOC107565197 coding downstream 35651 8082902 ~ 8094663 (+)
si:dkey-284p5.3 NA coding downstream 54595 8101846 ~ 8105968 (+)
G340047 NA non-coding upstream 45324 7998083 ~ 7998288 (+)
G339965 NA non-coding upstream 154598 7888704 ~ 7889014 (+)
G339830 NA non-coding upstream 229748 7813632 ~ 7813864 (+)
LOC113535942 NA non-coding upstream 271156 7764753 ~ 7772456 (+)
G339804 LOC108256927,LOC108262328,LOC108441690 non-coding upstream 368957 7672980 ~ 7674655 (+)
G340056 rpl30,LOC107710097,LOC107556383 non-coding downstream 49918 8097169 ~ 8100677 (+)
G340146 NA non-coding downstream 186616 8233867 ~ 8237952 (+)
G340197 NA non-coding downstream 351967 8399218 ~ 8411358 (+)
G340248 LOC108256763,LOC108425228,LOC103022454,LOC106515840,LOC107724303,LOC107087831,LOC107584252 non-coding downstream 442428 8489679 ~ 8491914 (+)
G340257 NA non-coding downstream 566235 8613486 ~ 8617041 (+)
G339324 NA other upstream 1326466 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 1427589 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 1699703 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 3263226 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 3281010 4757814 ~ 4762602 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 193446 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 235709 8282960 ~ 8285204 (+)
sem1 NA other downstream 865677 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 1071763 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 1177353 9224604 ~ 9229638 (+)

Expression


Co-expression Network