fbxl6 (fbxl6)


Basic Information

Item Value
gene id fbxl6
gene name fbxl6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 7655705 ~ 7664305 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929554.2
ACGCGCTTTACAAAGCATTATGGGATACaagaaacagcaacaacaaaggAATCTTTCGCGATATTGCAAGTTCTGTAGAAAGGGTGAATTGATTTATTAAACTGATTGAAGCTCAAGGTCCACTTAGCCCGAAGTGATAAAAAGTGTTATCAAGTTTGTGATAACGAGCTGTATCGGTGAACACGCAGAGGTTTGTAGAAACAGTGTCACATTTTCACCAGGAATGGATGGTTCTCATCAAGAATTATCAAAATCCAAGGTACCCGAAACACCAGATAAGGGGGGTCCATCTTCCCAACATGTGGGCACTGGGACAGATCAGAAAAATACCATGCTCGACAAGAGAAAAGCAACCATGAAAAGGAAGGCTAATTCACTCAAAGATGAGaagagcaagaagaagaaaaagaagaagaagaagatccaACGAGTTCAGAGACCCAATTACACTGTACAGCATGGTGAGGATATGCTTCTGATTATATCAAACGTTAGCCAGTTTGACAGTGTTTGGAAACCTAAGCGAAAAGGTTACAAGAGGAAAAAGGCCAAAACAAAGACCACATCAGTGAGGAGGAAGAAAGAACCTACAAAACCCCGAGTCTCTAAAGTCACTGAAGAAGTTTTAGGCAATGATGTTGATTTGGAGGAATCAGAAACTGCTTTGAGCTTTGACTGGGGTCAGAGAATGCCAGTGGAGGTGTTAGTTAAGATTTTTGAACTGGTAGTTCTCCAAGATGGTGCCATACCTTTTCTCTGCAGGGTTGGCCGAGTTTGTCGTCTGTGGAATAGTGCTGCTTCTTCACCAGCTCTTTGGCGCAGTGTGTCCATTGGCTACTGCTGGATTGATCCTGGTAAGAGTCAGTTACCTGGAACTGAACAGAAGATTAAGAACACTGTAGACTGGCTAGCACAAAACAGGTTCTCACAGCTGAGGAATTTCAAGCTTTGTCACTGGAAAAAACATGTTGACTACGTTGTTCAGACGATAGCAAATGCCTGCTCACATCTCCAATCCCTAGAGTTGTCATACTGCATGGGTGTGACAAAAGAGGCCTTTCAAAATCTTGGAATTGCCTGTCAGTCTCTTGAGAACATAAATGTGCAACACTCAGAGTTTCAGGATGATGGTCTGCTCTCTTTCCTCGAGGTGTCTGGGAGTCAACTAAGAAAGATTTCCTTCACACGCAGCTCAAAAAGTGACAAACTTCTCAATGCTTTGTGTAGGGGTTGCTGTCCTGATCTCAGGTTTTTGGAGATCAATACTAAGTTAGACTGTGGATATTGCCCCCTTCCTATCTGTGTACAAGCTTTGCAACTTGGCTGTCCCAAGCTACAGACTTTTAGGTTGATGAATATTAACCCTGTTCCCAAAATGATTCGCAACACACCCAGTTCCACACTTGGCTTCCCCATGCTGGAGGAGCTGTGTATAGCCTCTTCATCTCATTCCTTTATGAATGACCAGGACCTGCTCAATATTCTGCATGGCTCCCCCCACCTACGGGTGCTGGACCTGCGGGGATGCTCACGCATCACAGCTGCTGGACTATATGCTCTGCCGTGTGAAGGTCTAGAGTGTTTATACTGGGGGCTGTATTTCAATAGCAATGTCAGAGTGGCATCAAACAAAGGCGTCCACATGCTCACACAGAAATGGAGCCATAGCCTTCGCGAGCTGGATCTCACCAACCAACCTTTCTCAGAAGAGGACATGGAAATTGCAATGGGGCATTTGGCTCATGGCACTGGAGCAGATTCCTTTCATTCTTTGAATCTCAGTGGGACCAAGATCACATCGTTTGCAATCAGGTTATTAGTGGGTCAGTCGACAGCTCTTAGCTACTTGAATCTGTCATCTTGCCGTTACCTTCCAAGGGGACTCAAACGAGTTTATCGTGGACAAGAAGACATACATCAGCTCCTGGACAAgttaaattaatgtaattaatgtatAGTTTTGTTTATGCTTTTGTAATGCATTTTAAGACTTAATTTTCAAAGTAATAAGATCCACAAAGTGTTaatatgtgtgtttaaaatagGCTACATAAAACCACAAGTAGgtaaataaattatatgatTGATTAAGATGGTCGGTTACCTGCTCTCTCTATAATATTAATGTATGAAAAGATGAGAATATATACAGAGCCCCAATTTGGATATTGAAACAACAAAGATGAAGTTTGGTTTAAAGGTAGCAGACTTATCATGTAACAGAAATCAACAACATTTAACAAGTGGGTTAAAAAGGAAagtttattagtgttttaaatgtaagcatTCCACTAAAATGGATTCCACTCCTTAGTGTTTACCTCAGTCTTTATCTAACAGGATAGAAAAATAGTAGTCTGAAAACATGAAACCATGCTGGTAAATAGATCCTTAGAATGGTAGTAATACATGAATCTCCCAAATGCAAAGGTTTGTAAAGAATTGTAAacatttgcaataaaaaaatgaaacaa
>XM_026929556.2
ACGCGCTTTACAAAGCATTATGGGATACaagaaacagcaacaacaaaggAATCTTTCGCGATATTGCAAGTTCTGTAGAAAGGGTGAATTGATTTATTAAACTGATTGAAGCTCAAGGTCCACTTAGCCCGAAGTGATAAAAAGTGTTATCAAGTTTGTGATAACGAGCTGTATCGGTGAACACGCAGAGGTTTGTAGAAACAGGAATGGATGGTTCTCATCAAGAATTATCAAAATCCAAGGTACCCGAAACACCAGATAAGGGGGGTCCATCTTCCCAACATGTGGGCACTGGGACAGATCAGAAAAATACCATGCTCGACAAGAGAAAAGCAACCATGAAAAGGAAGGCTAATTCACTCAAAGATGAGaagagcaagaagaagaaaaagaagaagaagaagatccaACGAGTTCAGAGACCCAATTACACTGTACAGCATGGTGAGGATATGCTTCTGATTATATCAAACGTTAGCCAGTTTGACAGTGTTTGGAAACCTAAGCGAAAAGGTTACAAGAGGAAAAAGGCCAAAACAAAGACCACATCAGTGAGGAGGAAGAAAGAACCTACAAAACCCCGAGTCTCTAAAGTCACTGAAGAAGTTTTAGGCAATGATGTTGATTTGGAGGAATCAGAAACTGCTTTGAGCTTTGACTGGGGTCAGAGAATGCCAGTGGAGGTGTTAGTTAAGATTTTTGAACTGGTAGTTCTCCAAGATGGTGCCATACCTTTTCTCTGCAGGGTTGGCCGAGTTTGTCGTCTGTGGAATAGTGCTGCTTCTTCACCAGCTCTTTGGCGCAGTGTGTCCATTGGCTACTGCTGGATTGATCCTGGTAAGAGTCAGTTACCTGGAACTGAACAGAAGATTAAGAACACTGTAGACTGGCTAGCACAAAACAGGTTCTCACAGCTGAGGAATTTCAAGCTTTGTCACTGGAAAAAACATGTTGACTACGTTGTTCAGACGATAGCAAATGCCTGCTCACATCTCCAATCCCTAGAGTTGTCATACTGCATGGGTGTGACAAAAGAGGCCTTTCAAAATCTTGGAATTGCCTGTCAGTCTCTTGAGAACATAAATGTGCAACACTCAGAGTTTCAGGATGATGGTCTGCTCTCTTTCCTCGAGGTGTCTGGGAGTCAACTAAGAAAGATTTCCTTCACACGCAGCTCAAAAAGTGACAAACTTCTCAATGCTTTGTGTAGGGGTTGCTGTCCTGATCTCAGGTTTTTGGAGATCAATACTAAGTTAGACTGTGGATATTGCCCCCTTCCTATCTGTGTACAAGCTTTGCAACTTGGCTGTCCCAAGCTACAGACTTTTAGGTTGATGAATATTAACCCTGTTCCCAAAATGATTCGCAACACACCCAGTTCCACACTTGGCTTCCCCATGCTGGAGGAGCTGTGTATAGCCTCTTCATCTCATTCCTTTATGAATGACCAGGACCTGCTCAATATTCTGCATGGCTCCCCCCACCTACGGGTGCTGGACCTGCGGGGATGCTCACGCATCACAGCTGCTGGACTATATGCTCTGCCGTGTGAAGGTCTAGAGTGTTTATACTGGGGGCTGTATTTCAATAGCAATGTCAGAGTGGCATCAAACAAAGGCGTCCACATGCTCACACAGAAATGGAGCCATAGCCTTCGCGAGCTGGATCTCACCAACCAACCTTTCTCAGAAGAGGACATGGAAATTGCAATGGGGCATTTGGCTCATGGCACTGGAGCAGATTCCTTTCATTCTTTGAATCTCAGTGGGACCAAGATCACATCGTTTGCAATCAGGTTATTAGTGGGTCAGTCGACAGCTCTTAGCTACTTGAATCTGTCATCTTGCCGTTACCTTCCAAGGGGACTCAAACGAGTTTATCGTGGACAAGAAGACATACATCAGCTCCTGGACAAgttaaattaatgtaattaatgtatAGTTTTGTTTATGCTTTTGTAATGCATTTTAAGACTTAATTTTCAAAGTAATAAGATCCACAAAGTGTTaatatgtgtgtttaaaatagGCTACATAAAACCACAAGTAGgtaaataaattatatgatTGATTAAGATGGTCGGTTACCTGCTCTCTCTATAATATTAATGTATGAAAAGATGAGAATATATACAGAGCCCCAATTTGGATATTGAAACAACAAAGATGAAGTTTGGTTTAAAGGTAGCAGACTTATCATGTAACAGAAATCAACAACATTTAACAAGTGGGTTAAAAAGGAAagtttattagtgttttaaatgtaagcatTCCACTAAAATGGATTCCACTCCTTAGTGTTTACCTCAGTCTTTATCTAACAGGATAGAAAAATAGTAGTCTGAAAACATGAAACCATGCTGGTAAATAGATCCTTAGAATGGTAGTAATACATGAATCTCCCAAATGCAAAGGTTTGTAAAGAATTGTAAacatttgcaataaaaaaatgaaacaa

Function

symbol description
fbxl6 Predicted to enable DNA binding activity. Predicted to be involved in chromatin silencing. Orthologous to human FBXL6 (F-box and leucine rich repeat protein 6).

NR:

description
F-box/LRR-repeat protein 6 isoform X1

GO: NA

KEGG:

id description
K10272 FBXL6; F-box and leucine-rich repeat protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929554.2 True 2474 mRNA 0.41 10 7655705 7664305
XM_026929556.2 False 2457 mRNA 0.41 10 7655705 7664305

Neighbor

gene id symbol gene type direction distance location
nfatc1 nfatc1,LOC107739553,LOC107656600,LOC107563708 coding upstream 18734 7592626 ~ 7636971 (+)
atp9b atp9b,LOC107656641,LOC107563702,LOC107697002 coding upstream 75284 7534040 ~ 7580421 (+)
sall3b LOC108256805,LOC107090828 coding upstream 124204 7522930 ~ 7531501 (+)
galr1a galr1a,galr1,LOC108256854,LOC107697195,LOC107592101,LOC103037936,LOC108429058 coding upstream 178043 7474707 ~ 7477662 (+)
tshz1 tshz1,LOC108257250,LOC108429095,LOC107748691,LOC107592027,LOC107696938,LOC107739558,LOC107688322 coding upstream 377565 7236100 ~ 7278140 (+)
trhrb LOC108256856,LOC108441692 coding downstream 206572 7870877 ~ 7877775 (+)
pkhd1l1.1 pkhd1l1 coding downstream 257127 7921432 ~ 7971682 (+)
gdf6b gdf6 coding downstream 309251 7973556 ~ 7976616 (+)
LOC113536206 LOC108256941,LOC108410903,LOC107717718 coding downstream 356496 8020801 ~ 8028040 (+)
LOC113535936 LOC108270576,LOC108256939,LOC108270587 coding downstream 379307 8043612 ~ 8047251 (+)
G339721 NA non-coding upstream 188059 7449750 ~ 7467646 (+)
G339700 NA non-coding upstream 256635 7395074 ~ 7399070 (+)
G339661 NA non-coding upstream 405290 7247820 ~ 7250415 (+)
G339659 NA non-coding upstream 422598 7232884 ~ 7233107 (+)
G339618 LOC108429093 non-coding upstream 696421 6953062 ~ 6959284 (+)
G339804 LOC108256927,LOC108262328,LOC108441690 non-coding downstream 8675 7672980 ~ 7674655 (+)
LOC113535942 NA non-coding downstream 100448 7764753 ~ 7772456 (+)
G339830 NA non-coding downstream 149327 7813632 ~ 7813864 (+)
G339965 NA non-coding downstream 224399 7888704 ~ 7889014 (+)
G340047 NA non-coding downstream 333778 7998083 ~ 7998288 (+)
G339324 NA other upstream 938559 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 1039682 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 1311796 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 2875319 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 2893103 4757814 ~ 4762602 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 576392 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 618655 8282960 ~ 8285204 (+)
sem1 NA other downstream 1248623 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 1454709 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 1560299 9224604 ~ 9229638 (+)

Expression


Co-expression Network