tinagl1 (tinagl1,LOC107706169,LOC106588893,LOC107669690,LOC107593537,LOC107731519)


Basic Information

Item Value
gene id tinagl1
gene name tinagl1,LOC107706169,LOC106588893,LOC107669690,LOC107593537,LOC107731519
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 12082077 ~ 12108662 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929576.2
TGAAAGGAGGAGGTCCTCCCAACTTGTCTCAATATAAAGCCTGGCACTGAGTCTGAGAGACACATAGCTGAGAGGAAATGAAAGGTAGATGAGGAAAAAGAACTGAGAGAGACTACAAACACTGGTCTGTTTGAACTTTGTCCTGTTCTGTTTCCCTTCCGGAATAAAACAGCAAAGAGGATTTATTTCATACTGTGACAAGGtgattaatgatgatgatgatgatgaggctgGTTGTGGTGGCCAGTGCTTTGCTTCTCCTGATGGTGGACAACAGCATGATGGAGAGAATCCTGTCCCGCAGCAGGAGGGACCTGGCCAGCCCGCTGCACGCTGGGGGTATCCGGGACCCATTCGGCTCATACTGTCAGAGAAGAGGGGGCTGCTGTGAGGGCAGGAATGATGAGTGCACCATGCCTTACCTGGATACCATCTGCTACTGTGACCTGTTTTGCAACCGCACAGTGAGCGACTGCTGCCCGGATTTCTGGGGCCACTGTCTGGGAATCCAGCCTCCTCCCAGAGGTATTTGTGAGAGAAATGGCCACAGGTTCCACTCAGGTGCAACCTACAAAGAGAACTGCAATTTATGTACATGTAGCGCAAATGGCCAGTGGGTCTGTGAGCAGTACGCCTGCCTGATAGAACAAGACATGATCCAGGCAGTGAACTGGGGAAACTATGGTTGGAGGGCAGCTAACTACAGTCAGTTCTGGGGTATGAGTCTGGATGAGGGTTTGCGCTACCGTCTGGGCACTCAGCGACCTTCCCGAGCCATCATGAGTATGAATGAGATTCAGATGAACATGGATAATAACGAATATCTGCCCAGTTATTTCAATGCTGCTGAGAAGTGGCCAGGAAAAATCCACGAGCCCCTGGACCAGGGCAACTGTGCTGCCTCGTGGGCCTTCTCCACAGCAGCTGTAGCATCAGACCGAATCTCCATTCAGTCCATGGGACACATGACCCCTCAACTGTCACCCCAGAATCTGATTTCCTGTGACACACGTAACCAAGGCGGCTGTGCTGGAGGACACGTTGATGGCGCATGGTGGTACCTGAGGAGAAGAGGGGTGGTGACAGAGGAGTGTTATCCGTTTAATCCGCCCCAGCAGACCCCTGCTGAAGTGAGCCGCTGTATGATGCAGAGTCGTTCAGTGGGCCGAGGGAAGAGACAGGCCACAGCCCGCTGTCCCAACATCCACACCTACCACAATGAAATCTACCAGTCCACCCCACCCTACAGACTGTCCACAAATGAGAAGGAGATAATGAAGGAGATCATGGATAATGGGCCTGTGCAAGcCATCGTGGAGGTGCATGAGGACTTCTTTGTGTACAAGAGTGGAATCTACCGACACACTGATGTGAATGTACACAAAGCACCACAGTATCGCAAGCACGGCACACACTCCGTGAGGATCACAGGTTGGGGAGAAGAAAGAGATTACAATGGGAAAACACACAAGTACTGGATTGCTGCCAACTCATGGGGCAAGAACTGGGGTGAAGATGGCTACTTCCGCATTGCAAGAGGAGAAAACGAATGCGAAATTGAGGCATTTGTGATTGGCGTGTGGGGCCGGATAACCATGGAGGACATGCACagccatcaccaccatcactatGGAATACGCAAATAGAGATGCGCAATCAGGTGTGTCTCTGATCCTTGTGCCTCCTTCTGAGATCCGTGTGCACCTCATCGCCAGAttgaacaaacacaaaagacTCAGTCAGGACTATGGCAGGAGACTGCGATATGGTTTCTATTAAAGCCATCAAACTTCTATTGAATATATTATTCTCGCCAGTGCTCATAGGTGTTCATAAATAGCCAGTCCTTTTTGTTGTTCAAATGTGGGCAGTTTGGATTGAGCCTTGTGGTGGTTCTAATGTTTCCCTTTTCTCTATGCAAGAAAATGTCAACATAAAGTCAGTTTAGTTATTGGCCAAGGAAAATTGGTTCATGGAGACTTGCCTGTAACTGTGAGCTCACCAAAGCCCCCTGGTGGCCACACCACTCCATTACAATTACACATTCACTTCTCATACATGATGGTATGAAGAGATCACATAGTCTGAGTAGTCCATTAATGACTACAAAGATGGCTATACTATTAATCTTcttctttgttcattttattttgtttttattagcgATCGCTTGGTAGGTAGTTTAGAATTGTAAGTAACAGAGTCTATGAAACTCAGACTCACTCAATGTGCATTTCAGACAGTACATTCCAGCATTACAATTAAGCACACTGGAAAAGGCAAGACTATGTTAGGTTGAATTAAAAGGTTGAATTTATtaccaattatttattttaaagaactaTGACAGctatttttacagtaaatatgtttatggttgtggtctttttttctgagtgattggctgcttttattttgaacattCCATTTATTCCAAATGCATCAAACTCTCCACCTGAGAATCAGCTACAATGCTGAAGATGCACAGTAGCTGACCTGGTATTTattaaatcaaacaaaaagtgcattttaataCAGTAACAGGCATTATAATGACCACTGATATAACAGCAGAGCTTATTCACTTACTCTAGACATTGGGTCTTAAACTTTTTGAAGACAGAAacacctttaactgtaaaataaagttcacagaccccctcagcacagatttatttcatgaccTCATCTTTTAAATGTAGACAATAATATTCTGTCTATTTCTTGGAGTCAAagagattgttttttttttttttttttttttaatacagtaggTCCAGTAGGTTTAAACCTCATTAAATTCAGGTGACCTGTCAAGTAGGCAGTCTATaagatttattaataataaatattttaacttcGATTATAATGGGCTGTGACTTTCACCACTGTAAATGAATTGTAAAAATTATGGACACCCTGGCTATACTTCATGAACCCCTGGGGCTCCCCAGACCCCATTGTTCTAAGGACATGTCCTCCTAACAGGcctttcacattttgtttaacacttttgtAGCGACACATAAAGGCTGACTAAGAATTACTGATCATTATTTTATGGTTACAATCTTAAAATATTTCAACTAACACTTATTcaagtttttttatgtttcGTACTGTAATGCTGTGGTTTCTTGGGGGATTTTCACTACAGTCAACCCTTGCTAATTCTGAAATACAGAAGTCTCTTATAACAATACAATGCTTTCTGGCATAAACTTATACCAAGTATGAGCATAGACAATGCCACAAAGTGATCATTTTTGCTATCTTTGTTGTTACACCtattttaaatctcttttttttttccatatgttAGTGCAAATGCTACTGTGTTTGATGTgacattttgtatgtttttcccACCTATAAGCAGGTCTCCACTACTGAAATGAATCATACCAAGCAATTCCATGGCGGTTGAATATTTCACAGGCTCTAAGTAAATCAAATATTCGCATCATAGGAAATGATTTTTATAATTCCCCCTCAGCCATTTGGCTCCGTATATGGGAAGAAATGTGTGCTCAGATACAGTGTTATACTAAGCTTGCGTGTCATGCTCAGTTAATCaggtgcagatttttttttaaccaaagatGAGCTGCAAATCACGTCTGTTCGCTTCAaagcagcatcacacacacttgactTAAGAGTACAACAAAGAGTTACTGAGGTAATACAGTACAGCGCTGGGTTTGAAAACACAGCTGCTCACTTTAAACATTTCTGAGACTTCTATAATGCAGTGTGAATAGTCACACGAAGGCCTCTAACTGTATCACTGACCATATAATCATCTTGTTCCATGCAGGAATGTGAACTCTTGTGTTGAACattggtgttgattattttcttcagGTCTATTCAGCATCATGTatttctttaacacacacaagcCTCTGCTACTGAAATGCATTTCTCTACTTCTGATCATTACCATTATAAGCTATTATTAATGGACATAAACTTGACACATATCTAATGTTATGCTGTTTTTAAAGCAGTGATAGACTTCCATGATCCATCCATTCAGTTAGTAAGAGGATTCATTTTCCTATTTAGTCATCCACACCAGAGATAAACCCCTCACACAGAGTGAGTGTGCTAGAAGACTGAACCCTAGTCATGCAGAGGAAATGGGTTTTGGCCAGATGATGTATTCTTAAGTCTCCTGTATGGATAATTGGTCTCTATTGGGTTAGAATGCGCTGCTTAAAATATGTCCCAGTGTaggattttattaaattaaagaaagagagatttaTATCAGACTATTTAAGAAGCAGGTTTGTAAATTATATCCCTGTGGTCTTTGATGCAATGTGCATTATTGTGCTGTCACTTGTATTGTATATATGCAACACAAACCACTGTAATGTCCACCTGTGTAATGCAATAAAATCCAAATCCAACCATCATACAAACACAA

Function

symbol description
tinagl1 Predicted to enable cysteine-type peptidase activity and peptidase inhibitor activity. Acts upstream of or within embryonic viscerocranium morphogenesis and sprouting angiogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space and lysosome. Orthologous to human TINAGL1 (tubulointerstitial nephritis antigen like 1).

NR:

description
PREDICTED: tubulointerstitial nephritis antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929576.2 True 4438 mRNA 0.42 12 12082077 12108662

Neighbor

gene id symbol gene type direction distance location
gatad2b gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107696601,LOC107591599 coding upstream 18208 12023894 ~ 12063869 (+)
si:ch211-57n23.4 si:ch211-57n23.4,LOC108256859,LOC108424704,LOC107593575,LOC107722127,LOC107731740,LOC107670070 coding upstream 113435 11947350 ~ 11968642 (+)
LOC117595868 NA coding upstream 211067 11869215 ~ 11871010 (+)
meox2b LOC108256791,LOC107724325,LOC107584352,LOC107702081,LOC107696195,LOC107709256,LOC107568803 coding upstream 241011 11832590 ~ 11841066 (+)
LOC113536236 LOC108257374,LOC107702070,LOC107584324,LOC107724274,LOC106588710 coding upstream 275656 11798056 ~ 11806421 (+)
si:ch211-13c6.2 LOC108257116 coding downstream 117099 12225761 ~ 12237465 (+)
nfyc nfyc,LOC106588897,LOC107696595,LOC107591605 coding downstream 132594 12241256 ~ 12268864 (+)
LOC113536355 kcnq4,LOC107593542,LOC107706174,LOC107591607 coding downstream 169219 12277881 ~ 12338298 (+)
jtb jtb coding downstream 231377 12340039 ~ 12347650 (+)
anp32e anp32e,LOC107706176,LOC107669588 coding downstream 274121 12382783 ~ 12387194 (+)
G342208 NA non-coding upstream 152020 11863246 ~ 11930057 (+)
G342189 bzw2,LOC107709265,LOC107724358,LOC107691535,LOC107702135 non-coding upstream 284282 11787073 ~ 11797795 (+)
G342190 bzw2,LOC107724358,LOC107568798 non-coding upstream 297097 11782266 ~ 11784980 (+)
G342079 NA non-coding upstream 492852 11589018 ~ 11589225 (+)
G342067 NA non-coding upstream 498222 11583642 ~ 11583855 (+)
G342333 NA non-coding downstream 167084 12275746 ~ 12275952 (+)
G342496 NA non-coding downstream 279122 12387784 ~ 12388775 (+)
G342538 psmb4,psb4,LOC107593590,LOC107696528 non-coding downstream 348045 12456707 ~ 12460218 (+)
G342546 NA non-coding downstream 365682 12474344 ~ 12476263 (+)
G342589 NA non-coding downstream 386380 12495042 ~ 12544734 (+)
sostdc1b LOC108257373 other upstream 266804 11810109 ~ 11815273 (+)
dlgap3 dlgap3 other upstream 608754 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 787721 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 1600107 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 1885075 10193747 ~ 10197002 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 583345 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 677175 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 795961 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 968508 13077170 ~ 13081229 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 2097059 14205721 ~ 14231844 (+)

Expression


Co-expression Network