si:ch211-13c6.2 (LOC108257116)


Basic Information

Item Value
gene id si:ch211-13c6.2
gene name LOC108257116
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 12225761 ~ 12237465 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929586.2
CTCCCACTTCCGGTCTGCTCATGGCTTTTATTCTGTAGTGAAAAATAGCAGAGGAGGCGAAGTAACAGAAAAGACGTGCATAAGCACACCGGGGAGTTTAGAGAAAGGCGTTTGGGAGAAATAGAGTTTAGTTTTTGGGTTTATGCAGTTGcagtaaatttataaatttataaaatatacagagtCTGTGTGAATTTGCATACGCTTCCGGAAGTTAGCCAACTAGCCTCGTCGAGGTAGCGAGCTATACTGCAGCTAGTTCCTTACAAATCCTTGTAACGATATCTAGTTCAACGTGATAATTCTTTGTCAGTGCAGGTGATATTTAGCTAGCTGAAGCAGAGCAAGAGGATTAGCAATGGCCGACCTGCTGACGGTTTACGACGACGGAGAGTCCAACACGTTTATAGACTGCACGattTGTGACAAAAGAATAAGAGGGGATACTAACTATAAGATCCATCTGACCACTTTACAGCATCTGAAGAGGGAGAGAACCTTAGCTGATAAGGGCCTTATCCCAGAGCCAACCCCATTGCCACAATGGGCCAATATCAAAGATTACTTGACGTACCTGAACCTTAGTGAACCCATTATTGGGCTTGGTGACTTGGTACAAGAGGACGATTTTTTCACAAATGATGGCAGAGCCCTGCTGCGGTACAGGTGCAGACTGTGTACAGTCCAGATGGACCTCTATGACATGGCCACGCATGTGGTGGGTCGTAGGCACCGGCAGAAATACTTGGAGCGGCATAGGCCAGACTTAGTGACATGGGAAAAGACTTCAGAGAAGCAAGCAGGTGTTGTTGCGAGGGCTAAGGCTGCAATAGTAGAAAAGCAAGAGGGATGGGGAACTCCAGTGCCACTCATCAGATCAGATAAAGGAAGATCACTGAGAAATCGAGGAGCACCACAAGACCCTCCATCTTATGTTCAGGGAAGAGCCTCCTCTGGGCGAGACAGGAGAGAGCAAGACTTGTACAATCAATCATATATGGAAGGTGGTGATGCTTACGGGAGGCCATCTTGTTATCGTGAGGATAATCAATATGACCAGTCATATAGAGATGATGGACCTCACCACCCGTCCGGTTCAGGGGATAACCAATATGATGCACCATATTCTCAAGGTGACAGGCAGAGAAGGTCCTATGGAGAGAGGGATTACATGGAAAGACCTCACTGGGAAGATGAAATGAACATAGGGGCTTTTCAAGGCGATGGAACTCACGATAGACGATATACGGAAAAAGGCGTTCCACAGCCTTATGACGATGACTGGCACCCCGAAACAAATCCCAGCAGAGGACCATACAAAAGTAGAGAAAGTGATGATTATTATCATGGCAACATTTCAGAAAACAGGTTTGGTGAGTCAGGAATGGGCTATCAAGAGAGTGGCAGGATGCAAGAGCCGACGTACACGTCACACCACGGAACAGGACCTAGCATGAATGAAAGGCAGCGGCAGAGCAGAAACATGCCGTAtacagagaaaggaagagaacgTTTCCAGGATATGAATGAAACTGGAAGACATGGGTCTTTTGAAATGCAAGGctataacaaaacacaaaggtACTACCCAAGTGAAGATGCCATacctgcaaaaaagaaaaggaagagcaGATTCTCTGATGCCTCGCCGCTAGAGATGGCACTTGCACGGAAGAGccAAATTGATGACATgatttcaaaatataaacagaaaggaCGAATGGTTCCCACAAATAATCAAGCCTCTGGAAACAGCATGGATTCAGCTGTAACTCCACGTATGGAAAATGTTTTGGATGTCCTGAATGACATCCAAATTGAGAATGTGGAAGAGGCTAACTTCTTAAAGGATAAGTTATGCACCCTTCTCAAAGAGTTCCAATCAAATAAAGTTCAGCGCTCTCAGGGCCAGGTTTCACAGACTTCGATAGATTTCACAGACAGCTATCACGGCGGTAACAAAATGGAGCAGCGGAGAGATATGCCGGAGTCGAGGCGTTTAGATGTCCAAGGCTTTCAGGAGCCTGCAAGATACGATCGTGACTTGCTAGGCCCCAGGGAATATTTACATACAAGGCACATTGAAGATCCAAAAAGCATGAGGCAAAACAGAGGTCCTGAAGAGCCTGAATATCAGTGGGATCCTTATAGAGAGGGCTCAGCTGGCCGATCTGAAGAACGCATGCCTCGCCATCCAGATGACAGAAGAGGTTACCGAGagGGTGCTTGGAATTCCAGACCTctaagagaagaagaaagggtcTATGTAGAGGAACGCCATTATCAGCATGACTATCGTTCTGGTGGAGATCTCTATGACCCGTTTGAGCCTTCATCATCTCCACCTTTGGAAACAGGCTCCTCCACTCTTGATAAGCTTGCATCCACACTTCTGGAACTGGTGGCAcgcaaaacaaattaaatgcaCCCTTCGAATCGGTGTGTTCAGAAGTAATGCTCAGTAATTCTTTAGTCATTCAGTGAAGTTTGTATTTGTTAGTTTTCCCCTAGAAAAGCTTTTtaagataagatgaaaccatttgtatgtgtgtgtgtttgttttatgtagtactgatgggtgtacaaaattgtggtaataaaccatttttgttcCTCA
>XM_026929587.2
CTCCCACTTCCGGTCTGCTCATGGCTTTTATTCTGTAGTGAAAAATAGCAGAGGAGGCGAAGTAACAGAAAAGACGTGCATAAGCACACCGGGGAGTTTAGAGAAAGGCGTTTGGGAGAAATAGAGTTTAGTTTTTGGGTTTATGCAGTTGcagtaaatttataaatttataaaatatacagagtCTGTGTGAATTTGCATACGCTTCCGGAAGTTAGCCAACTAGCCTCGTCGAGGTAGCGAGCTATACTGCAGCTAGTTCCTTACAAATCCTTGTAACGATATCTAGTTCAACGTGATAATTCTTTTTGTTAGCTTTGTCAGTGCAGGTGATATTTAGCTAGCTGAAGCAGAGCAAGAGGATTAGCAATGGCCGACCTGCTGACGGTTTACGACGACGGAGAGTCCAACACGTTTATAGACTGCACGattTGTGACAAAAGAATAAGAGGGGATACTAACTATAAGATCCATCTGACCACTTTACAGCATCTGAAGAGGGAGAGAACCTTAGCTGATAAGGGCCTTATCCCAGAGCCAACCCCATTGCCACAATGGGCCAATATCAAAGATTACTTGACGTACCTGAACCTTAGTGAACCCATTATTGGGCTTGGTGACTTGGTACAAGAGGACGATTTTTTCACAAATGATGGCAGAGCCCTGCTGCGGTACAGGTGCAGACTGTGTACAGTCCAGATGGACCTCTATGACATGGCCACGCATGTGGTGGGTCGTAGGCACCGGCAGAAATACTTGGAGCGGCATAGGCCAGACTTAGTGACATGGGAAAAGACTTCAGAGAAGCAAGCAGGTGTTGTTGCGAGGGCTAAGGCTGCAATAGTAGAAAAGCAAGAGGGATGGGGAACTCCAGTGCCACTCATCAGATCAGATAAAGGAAGATCACTGAGAAATCGAGGAGCACCACAAGACCCTCCATCTTATGTTCAGGGAAGAGCCTCCTCTGGGCGAGACAGGAGAGAGCAAGACTTGTACAATCAATCATATATGGAAGGTGGTGATGCTTACGGGAGGCCATCTTGTTATCGTGAGGATAATCAATATGACCAGTCATATAGAGATGATGGACCTCACCACCCGTCCGGTTCAGGGGATAACCAATATGATGCACCATATTCTCAAGGTGACAGGCAGAGAAGGTCCTATGGAGAGAGGGATTACATGGAAAGACCTCACTGGGAAGATGAAATGAACATAGGGGCTTTTCAAGGCGATGGAACTCACGATAGACGATATACGGAAAAAGGCGTTCCACAGCCTTATGACGATGACTGGCACCCCGAAACAAATCCCAGCAGAGGACCATACAAAAGTAGAGAAAGTGATGATTATTATCATGGCAACATTTCAGAAAACAGGTTTGGTGAGTCAGGAATGGGCTATCAAGAGAGTGGCAGGATGCAAGAGCCGACGTACACGTCACACCACGGAACAGGACCTAGCATGAATGAAAGGCAGCGGCAGAGCAGAAACATGCCGTAtacagagaaaggaagagaacgTTTCCAGGATATGAATGAAACTGGAAGACATGGGTCTTTTGAAATGCAAGGctataacaaaacacaaaggtACTACCCAAGTGAAGATGCCATacctgcaaaaaagaaaaggaagagcaGATTCTCTGATGCCTCGCCGCTAGAGATGGCACTTGCACGGAAGAGccAAATTGATGACATgatttcaaaatataaacagaaaggaCGAATGGTTCCCACAAATAATCAAGCCTCTGGAAACAGCATGGATTCAGCTGTAACTCCACGTATGGAAAATGTTTTGGATGTCCTGAATGACATCCAAATTGAGAATGTGGAAGAGGCTAACTTCTTAAAGGATAAGTTATGCACCCTTCTCAAAGAGTTCCAATCAAATAAAGTTCAGCGCTCTCAGGGCCAGGTTTCACAGACTTCGATAGATTTCACAGACAGCTATCACGGCGGTAACAAAATGGAGCAGCGGAGAGATATGCCGGAGTCGAGGCGTTTAGATGTCCAAGGCTTTCAGGAGCCTGCAAGATACGATCGTGACTTGCTAGGCCCCAGGGAATATTTACATACAAGGCACATTGAAGATCCAAAAAGCATGAGGCAAAACAGAGGTCCTGAAGAGCCTGAATATCAGTGGGATCCTTATAGAGAGGGCTCAGCTGGCCGATCTGAAGAACGCATGCCTCGCCATCCAGATGACAGAAGAGGTTACCGAGagGGTGCTTGGAATTCCAGACCTctaagagaagaagaaagggtcTATGTAGAGGAACGCCATTATCAGCATGACTATCGTTCTGGTGGAGATCTCTATGACCCGTTTGAGCCTTCATCATCTCCACCTTTGGAAACAGGCTCCTCCACTCTTGATAAGCTTGCATCCACACTTCTGGAACTGGTGGCAcgcaaaacaaattaaatgcaCCCTTCGAATCGGTGTGTTCAGAAGTAATGCTCAGTAATTCTTTAGTCATTCAGTGAAGTTTGTATTTGTTAGTTTTCCCCTAGAAAAGCTTTTtaagataagatgaaaccatttgtatgtgtgtgtgtttgttttatgtagtactgatgggtgtacaaaattgtggtaataaaccatttttgttcCTCA
>XM_034298486.1
TTTATAGACTGCACGattTGTGACAAAAGAATAAGAGGGGATACTAACTATAAGATCCATCTGACCACTTTACAGCATCTGAAGGCCTTATCCCAGAGCCAACCCCATTGCCACAATGGGCCAATATCAAAGATTACTTGACGTACCTGAACCTTAGTGAACCCATTATTGGGCTTGGTGACTTGGTACAAGAGGACGATTTTTTCACAAATGATGGCAGAGCCCTGCTGCGGTACAGGTGCAGACTGTGTACAGTCCAGATGGACCTCTATGACATGGCCACGCATGTGGTGGGTCGTAGGCACCGGCAGAAATACTTGGAGCGGCATAGGCCAGACTTAGTGACATGGGAAAAGACTTCAGAGAAGCAAGCAGGTGTTGTTGCGAGGGCTAAGGCTGCAATAGTAGAAAAGCAAGAGGGATGGGGAACTCCAGTGCCACTCATCAGATCAGATAAAGGAAGATCACTGAGAAATCGAGGAGCACCACAAGACCCTCCATCTTATGTTCAGGGAAGAGCCTCCTCTGGGCGAGACAGGAGAGAGCAAGACTTGTACAATCAATCATATATGGAAGGTGGTGATGCTTACGGGAGGCCATCTTGTTATCGTGAGGATAATCAATATGACCAGTCATATAGAGATGATGGACCTCACCACCCGTCCGGTTCAGGGGATAACCAATATGATGCACCATATTCTCAAGGTGACAGGCAGAGAAGGTCCTATGGAGAGAGGGATTACATGGAAAGACCTCACTGGGAAGATGAAATGAACATAGGGGCTTTTCAAGGCGATGGAACTCACGATAGACGATATACGGAAAAAGGCGTTCCACAGCCTTATGACGATGACTGGCACCCCGAAACAAATCCCAGCAGAGGACCATACAAAAGTAGAGAAAGTGATGATTATTATCATGGCAACATTTCAGAAAACAGGTTTGGTGAGTCAGGAATGGGCTATCAAGAGAGTGGCAGGATGCAAGAGCCGACGTACACGTCACACCACGGAACAGGACCTAGCATGAATGAAAGGCAGCGGCAGAGCAGAAACATGCCGTAtacagagaaaggaagagaacgTTTCCAGGATATGAATGAAACTGGAAGACATGGGTCTTTTGAAATGCAAGGctataacaaaacacaaaggtACTACCCAAGTGAAGATGCCATacctgcaaaaaagaaaaggaagagcaGATTCTCTGATGCCTCGCCGCTAGAGATGGCACTTGCACGGAAGAGccAAATTGATGACATgatttcaaaatataaacagaaaggaCGAATGGTTCCCACAAATAATCAAGCCTCTGGAAACAGCATGGATTCAGCTGTAACTCCACGTATGGAAAATGTTTTGGATGTCCTGAATGACATCCAAATTGAGAATGTGGAAGAGGCTAACTTCTTAAAGGATAAGTTATGCACCCTTCTCAAAGAGTTCCAATCAAATAAAGTTCAGCGCTCTCAGGGCCAGGTTTCACAGACTTCGATAGATTTCACAGACAGCTATCACGGCGGTAACAAAATGGAGCAGCGGAGAGATATGCCGGAGTCGAGGCGTTTAGATGTCCAAGGCTTTCAGGAGCCTGCAAGATACGATCGTGACTTGCTAGGCCCCAGGGAATATTTACATACAAGGCACATTGAAGATCCAAAAAGCATGAGGCAAAACAGAGGTCCTGAAGAGCCTGAATATCAGTGGGATCCTTATAGAGAGGGCTCAGCTGGCCGATCTGAAGAACGCATGCCTCGCCATCCAGATGACAGAAGAGGTTACCGAGagGGTGCTTGGAATTCCAGACCTctaagagaagaagaaagggtcTATGTAGAGGAACGCCATTATCAGCATGACTATCGTTCTGGTGGAGATCTCTATGACCCGTTTGAGCCTTCATCATCTCCACCTTTGGAAACAGGCTCCTCCACTCTTGATAAGCTTGCATCCACACTTCTGGAACTGGTGGCAcgcaaaacaaattaaatgcaCCCTTCGAATCGGTGTGTTCAGAAGTAATGCTCAGTAATTCTTTAGTCATTCAGTGAAGTTTGTATTTGTTAGTTTTCCCCTAGAAAAGCTTTTtaagataagatgaaaccatttgtatgtgtgtgtgtttgttttatgtagtactgatgggtgtacaaaattgtggtaataaaccatttttgttcCTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929586.2 False 2617 mRNA 0.45 14 12225761 12237465
XM_026929587.2 True 2628 mRNA 0.45 14 12225761 12237465
XM_034298486.1 False 2189 mRNA 0.45 12 12226255 12237465

Neighbor

gene id symbol gene type direction distance location
tinagl1 tinagl1,LOC107706169,LOC106588893,LOC107669690,LOC107593537,LOC107731519 coding upstream 117099 12082077 ~ 12108662 (+)
gatad2b gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107696601,LOC107591599 coding upstream 161892 12023894 ~ 12063869 (+)
si:ch211-57n23.4 si:ch211-57n23.4,LOC108256859,LOC108424704,LOC107593575,LOC107722127,LOC107731740,LOC107670070 coding upstream 257119 11947350 ~ 11968642 (+)
LOC117595868 NA coding upstream 354751 11869215 ~ 11871010 (+)
meox2b LOC108256791,LOC107724325,LOC107584352,LOC107702081,LOC107696195,LOC107709256,LOC107568803 coding upstream 384695 11832590 ~ 11841066 (+)
nfyc nfyc,LOC106588897,LOC107696595,LOC107591605 coding downstream 3791 12241256 ~ 12268864 (+)
LOC113536355 kcnq4,LOC107593542,LOC107706174,LOC107591607 coding downstream 40416 12277881 ~ 12338298 (+)
jtb jtb coding downstream 102574 12340039 ~ 12347650 (+)
anp32e anp32e,LOC107706176,LOC107669588 coding downstream 145318 12382783 ~ 12387194 (+)
pogza NA coding downstream 191430 12428895 ~ 12455857 (+)
G342208 NA non-coding upstream 295704 11863246 ~ 11930057 (+)
G342189 bzw2,LOC107709265,LOC107724358,LOC107691535,LOC107702135 non-coding upstream 427966 11787073 ~ 11797795 (+)
G342190 bzw2,LOC107724358,LOC107568798 non-coding upstream 440781 11782266 ~ 11784980 (+)
G342079 NA non-coding upstream 636536 11589018 ~ 11589225 (+)
G342067 NA non-coding upstream 641906 11583642 ~ 11583855 (+)
G342333 NA non-coding downstream 38281 12275746 ~ 12275952 (+)
G342496 NA non-coding downstream 150319 12387784 ~ 12388775 (+)
G342538 psmb4,psb4,LOC107593590,LOC107696528 non-coding downstream 219242 12456707 ~ 12460218 (+)
G342546 NA non-coding downstream 236879 12474344 ~ 12476263 (+)
G342589 NA non-coding downstream 257577 12495042 ~ 12544734 (+)
sostdc1b LOC108257373 other upstream 410488 11810109 ~ 11815273 (+)
dlgap3 dlgap3 other upstream 752438 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 931405 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 1743791 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 2028759 10193747 ~ 10197002 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 454542 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 548372 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 667158 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 839705 13077170 ~ 13081229 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 1968256 14205721 ~ 14231844 (+)

Expression


Co-expression Network