znrf2a (znrf2,LOC105939633,LOC106531196)


Basic Information

Item Value
gene id znrf2a
gene name znrf2,LOC105939633,LOC106531196
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6621216 ~ 6634193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929692.2
GACCATAATAACCTTCGGCTCGTACCCGTACTCGTCTCCGCGCGCACCGGTCGCGTCGCCTTGTTTTTATCGGCGCTGTTATTATGTAGCGTTTGGACGTTTCATTTCTGAGCAGTTCACACGCgcgtatttattttttagtgtgAATGCATAAGTTTGTCCAAATATAACGGAGGTTGTTGACAATCAGGAGGCCTGTGGACAGTTTTGACACCGTCGCAAAACTTCGGTTACGGAAGAGCAACTAGTGTGCAGCCATGACCTTTTATTCTGCGCCATGTAGCGACTTGTTGTAGGATTATTTTCACATCTGGAGTTTAACCCCATCCACAGCCGAGCTCAGACATCGTTTGACTGATCCCAGCtcgctgttttgttttgttttgttttgttttaaagggACGTTGTTTGTTTTTAGGGCCCGAGCAGCGCGTCCTGAACAAAAACGCACTGAGATAAACACATGGGGCCCAAACAGAGCAGTCCGGCGGCTAGTGCTCGCCTCAGGGCTTACTCAGGCTCGGATGTGCCCGCTTCCACCACCACAGCCGCCGGTTCCGGGAGCGCGAGCGCAGCGGCGATTCGGTACTACAACGGAAACCAGCAGCAGGTCGGAGCGCGCGGACGGTACGCGGCGGACGGCGCGAGACCCAACTCGCTTTTTCAGCCCACCATCATAGCGCAAGGCAGCGGGACTCAAAGCGATGAAGACGCAGACGGAGAGCGAAGTCAGTCCGGTCCGAGGTTACTGATAGGATCGTTACCGGCCCACCTGTCTCCTCACCTGCTCGGAGctgGATTCAACTGTCCTGTGTGTTCAAAATTTGTTGCTTCAGATGAAATTGACCTTCACCTTGTCATGTGTCTCACCAAACCGAGACTCACCTATAACGAGGATGTCTTGATGAAGGACTCTGGGGAGTGTGCAATATGCCTGGATGACATGGAACAGGGAGATACCATTGCCAGACTGCCCTGCCTCTGTATCTACCACAAAGGgtGTATTGATGAATGGTTTGAGGTGAATAGGTCTTGCCCAGAACACCCTACGGATTAAACAATTGCTAACATTGCACAGgttCTCTCATTTCATCACTGAAGACTGCACACCCTGTGATCCAGAACCTCAGTGATTTTACAAAGACCTGTCATCACCTCAGATTCACACCTGTGCCAAAAGACAATTAAAACTGACTCAGGGATCCTGcccatgtgtgatttttttt

Function

symbol description
znrf2 Enables ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Located in cytoplasmic vesicle membrane; nuclear lumen; and plasma membrane. Part of protein-containing complex.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase ZNRF2-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10694 ZNRF1_2; E3 ubiquitin-protein ligase ZNRF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929692.2 True 1226 mRNA 0.51 5 6621216 6634193

Neighbor

gene id symbol gene type direction distance location
LOC113536295 ankrd28,LOC108256911,LOC108441435,LOC107745379,LOC107596646 coding upstream 49958 6528408 ~ 6571258 (+)
snx13 snx13 coding upstream 97090 6477323 ~ 6524126 (+)
twist1a twist1,twist1a,LOC108257132,LOC107755947,LOC107709721,LOC107667574 coding upstream 235536 6384201 ~ 6385680 (+)
LOC113536247 ferd3l,LOC102791589 coding upstream 239879 6380160 ~ 6381337 (+)
polr1f twistnb coding upstream 270487 6345471 ~ 6350729 (+)
clptm1l clptm1l,LOC107655116,LOC107694764 coding downstream 19028 6653221 ~ 6662882 (+)
rplp1 rplp1 coding downstream 29900 6664093 ~ 6666353 (+)
LOC113536346 tuba4l,LOC108256914,LOC108437766,LOC107669576,LOC107564211 coding downstream 139126 6773319 ~ 6775535 (+)
cndp2 cndp2,LOC107748690,LOC107696911,LOC107739559,LOC107688323 coding downstream 361120 6995313 ~ 7008911 (+)
tshz1 tshz1,LOC108257250,LOC108429095,LOC107748691,LOC107592027,LOC107696938,LOC107739558,LOC107688322 coding downstream 601907 7236100 ~ 7278140 (+)
G339279 NA non-coding upstream 94122 6526395 ~ 6527094 (+)
G339275 NA non-coding upstream 94899 6474482 ~ 6526317 (+)
LOC117595844 NA non-coding upstream 123473 6494601 ~ 6497743 (+)
LOC117595843 NA non-coding upstream 126970 6493637 ~ 6494246 (+)
LOC117595885 NA non-coding upstream 301442 6313485 ~ 6319774 (+)
G339300 snrpd1 non-coding downstream 13986 6648179 ~ 6651826 (+)
G339616 NA non-coding downstream 316379 6950572 ~ 6951822 (+)
G339618 LOC108429093 non-coding downstream 318869 6953062 ~ 6959284 (+)
G339659 NA non-coding downstream 598691 7232884 ~ 7233107 (+)
G339661 NA non-coding downstream 613627 7247820 ~ 7250415 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 5193 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 277307 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1840830 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 1858614 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 1868547 4698257 ~ 4752669 (+)
G339324 NA other downstream 76822 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 1606504 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 1648767 8282960 ~ 8285204 (+)
sem1 NA other downstream 2278735 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 2484821 9119014 ~ 9134179 (+)

Expression


Co-expression Network