fam49al (fam49a,LOC108257369,LOC103035846,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC101166565)


Basic Information

Item Value
gene id fam49al
gene name fam49a,LOC108257369,LOC103035846,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC101166565
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11541503 ~ 11569943 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929711.2
aagaatatgagagaaagagagggagggaggatgGAACGGAGCGTACTATTTCTCAGCTGCTAAGCAGAGAGTCTTGAGTGCAGAGACagtcagagtgagagagatcatTTGGTAACTGAGCAGGAGGAGCgcatgagcaagccagaggcaggCAGGGAAagggactgacacacacatttcacacacacacacacacacacatacacacacgcaaacacacacacagcgtgagGTTGACTCTAGTCGTGCGTTCAGGGAAGTCCACACAGCCGCTCACAGGGGAAGTGAAAGGAGTGCTGTTTTTTCACACTTCATACTCTTCCTTTGTATTCTCCAAACAGGGGTCTGCTCTGATCTTTTAGCTTCTCTATTTTCCCTTTTTGTCACCTATTTCTTTTTCCTGAAGACAGAGCAGGAGCACCGCTGCCTCCCTGTAAACCTTCTTGCCGGCGGTGGATGCTGATGCTGTGATACTGGCAGAGGAGCAGACAGGCCCCCAGTGGATGCAGTAAAGTGCTCTTGGAGGAAAATTGCAAGCAAAGGTTTGCCAGCCATGGGGAACCTCATTAAGGTCCTTGGCAAGGATTTAGAGAACtgtccacatttttttctggacttTGAAAATGCCCAACCCACAGAGGCGGAGACGGCCGTTTGGAATCAAGTCAGCGCCGTTCTGGAGGAGGCTCATGGTATCCTAGCAGAGTTACAGTCCTACAGCGGAGCAGGGCAAGAGATAAGAGAGGCTATTCAGAACCCCAATGACCTCCAGCTTCAGGAGAAAGCCTGGAACGCTGTGTGCCCCCTGGTGGCCAAGCTGAAGCGATTCTATGAATTTTCACTCAGGTTAGAAAATGCCCTACGCAGCCTGTTGGAAGCACTGACGAGCCCACCGTACGCTCCCATGCAGCACCTGGAGAGAGAACAAGCTCTGGCTAAACAGTTTGCAGAGATCCTGCACTTCACTCTTAGCTTTGACGAGCTAAAGATGACAAATCCAGCCATTCAGAATGACTTTAGTTACTACAGGAGGACCATAAGCAGGAATCGACTGAACAATCAGCAGTTAGAGGCAGAGAATGAAGTCAATAACGAAATGGCCAATCGGATGTCTCTGTTTTATGCAGAAGCGACACCTATGCTGAAAACCTTAAGCAATGCCACAACTAAGTTTGTGTCAGAGAACAAAACTTTGCCTATTGAAGACACCACAGATTGCCTGAGCACTATGGCCTGTGTGTGCCGGGTCATGCTGGAGACTCCGGAATACCGGTGCCGTTTCACCAACACAGACACTATGCTGTTCTGCATGCGTGTTATGGTGGGTGTCATTATCCTCTACGACCACGTTCACCCCGTGGGTGCCTTCGCTAAAACCTCCAAGATTGACatGAAGGGCTGCATCAAGGTGTTGAAAGAGCAGCCTTCAAACAGCGTGGAGGGACTGCTGAATGCACTGAGGTATACAACAAGACATCTAAACGATGACAGCACCTCTAAACAAATCCGTGCTCTGCTTCAATGAGGGGAGATGCCTGGAGAGAGAGGGTGGAAATGGAGCGAGtatgagaaagggagagagaaacagatgaagAAGGAAGTTGCTGACAGAGAAAAAAGTATGAAAGCTAGAAGTTTTTGGGTGACACACCCACAGAAACCTGTTTGTTTACATGAATGAAATGCAAAATGTCAATTTCAAAAACCTAAATagggaaaaatggaaaaaaagtatatataatatattgtcaGTTGTTCATCATGTCTTTGATTTtgtaaaaacatgaaaagagattatagaaatatatatatgtaggtatattaaaattaaaaaaaaaaaaaaaaaa

Function

symbol description
fam49a Acts upstream of or within regulation of T cell differentiation and thymus development. Predicted to be located in membrane. Is expressed in several structures, including adaxial cell; digestive system; musculature system; sensory system; and trunk. Orthologous to human CYRIA (CYFIP related Rac1 interactor A).

NR:

description
PREDICTED: protein FAM49A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929711.2 True 1847 mRNA 0.46 13 11541503 11569943

Neighbor

gene id symbol gene type direction distance location
pef1 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding upstream 249921 11284533 ~ 11291582 (+)
cx30.9 NA coding upstream 258275 11275826 ~ 11283228 (+)
LOC113536281 NA coding upstream 463066 11057105 ~ 11078437 (+)
angpt2b LOC108256759,LOC108425532 coding upstream 921330 10597416 ~ 10620173 (+)
wdyhv1 wdyhv1 coding upstream 1351187 10187693 ~ 10190316 (+)
mfsd2ab mfsd2a,LOC107687081,LOC107724351,LOC107568806,LOC107584275,LOC107709268,LOC107691531 coding downstream 120494 11690437 ~ 11705117 (+)
yars1 yars,LOC107687080,LOC107691530,LOC107724337,LOC107709269 coding downstream 136715 11706658 ~ 11715821 (+)
sync sync coding downstream 199027 11768970 ~ 11773563 (+)
LOC113536236 LOC108257374,LOC107702070,LOC107584324,LOC107724274,LOC106588710 coding downstream 228113 11798056 ~ 11806421 (+)
meox2b LOC108256791,LOC107724325,LOC107584352,LOC107702081,LOC107696195,LOC107709256,LOC107568803 coding downstream 262647 11832590 ~ 11841066 (+)
G341890 NA non-coding upstream 67524 11385036 ~ 11473979 (+)
G341894 NA non-coding upstream 222426 11318755 ~ 11319077 (+)
G341449 NA non-coding upstream 1083360 10437404 ~ 10458143 (+)
LOC113536353 NA non-coding upstream 1086711 10449436 ~ 10454792 (+)
G341445 NA non-coding upstream 1089941 10450465 ~ 10451562 (+)
G342067 NA non-coding downstream 13699 11583642 ~ 11583855 (+)
G342079 NA non-coding downstream 19075 11589018 ~ 11589225 (+)
G342190 bzw2,LOC107724358,LOC107568798 non-coding downstream 212323 11782266 ~ 11784980 (+)
G342189 bzw2,LOC107709265,LOC107724358,LOC107691535,LOC107702135 non-coding downstream 217130 11787073 ~ 11797795 (+)
G342208 NA non-coding downstream 293303 11863246 ~ 11930057 (+)
dlgap3 dlgap3 other upstream 68180 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 247147 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 1059533 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 1344501 10193747 ~ 10197002 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 2311865 9224604 ~ 9229638 (+)
sostdc1b LOC108257373 other downstream 240166 11810109 ~ 11815273 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 1122064 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 1215894 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 1334680 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 1507227 13077170 ~ 13081229 (+)

Expression


Co-expression Network