pithd1 (pithd1,LOC107654704)


Basic Information

Item Value
gene id pithd1
gene name pithd1,LOC107654704
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 13090286 ~ 13094541 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929772.2
ATGAGGGTAACAGCTATAAAATGCACACAGAGGTGTGTATTTGCGTTTCTTTTCTGACCGACTGCTTAATAACGTAACGTTCAACACAGCAAGGTGGCGCACAATATGACGTCACTCCACGTATAAGTTAGGCGACTATAAACGCTGCTCGCGATTGGTTACACTCGCTGTCTCACTGTCCAATCAGAGAAGCAATAGAATCTTGATATTTTGGGGAGTTTTGCGCACTGCATTATTGTACGTGGGTTAAAAGACTATATGCTATGTCTGGACACGGGCATGGACATGGGCATGGGCATGGGCACGGGTGTTGTGAGGATGATCATGAACCTGCTGAACGCGGTGTGGAGTATGGACTGTACCGACGCATCGACATCGACAAGCTGCAGTGTCTCAATGAGAGCCGAGATGGAGACGGCAAACTGGTGTTCAAACCGTGGGATCAGCgcacagacagagaaaagTTTGTAGAGAGCGACGCTGATGAGGAACTCCTGTTCAATATCCCGTTTACTGGAAGTGTAAAGCTGAAAGGAATTATACTTTCTGGAGAGGATGATGAGTCTCATCCAGCTGAAATAAGGCTATACAAGAACATCCCGCAAATGTCATTTGATGATATAAGCAGAGAGCCAGAGCAAGCATTTCGTATAAACAGGGATCCACTGGCTGAACTTGAGTATCCGACTAAGATTGCACGCTTTTCTAACGTCCAACACTTGTCTATTCATATTCCTCGAAACTTTGGGGCTGATTCTACTCGTGTCTACTACATTGGACTTCGGGGAGAATATACTGAGGCTCACAGACATGAGGTGACAATCTGTAACTATGAGGCAGCAGCAAATCCAGCAGATCATATACTGGAAGCCATTACTCCGCAGACACACTTCATTTCATGACGAATCATGTAAGATTGATTTGTCCATGTTGAGAGAGAATAGGTGTGGATGAATTTTGATAATACTGAGAGATTAATTCTATCACAAATATACATTAGGAGTAGGAATGGTGATTGCTCATGGAGGTTTGTTCAGTTGAAACTTTTTGTGTGCCAATAAATATTCAGAGATG

Function

symbol description
pithd1 Predicted to be involved in positive regulation of megakaryocyte differentiation and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PITHD1 (PITH domain containing 1).

NR:

description
PITH domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929772.2 True 1074 mRNA 0.44 7 13090286 13094541

Neighbor

gene id symbol gene type direction distance location
eloa tceb3 coding upstream 136 13081975 ~ 13090150 (+)
rpl11 rpl11 coding upstream 18621 13067186 ~ 13071665 (+)
LOC113536320 LOC108256977 coding upstream 24230 13056954 ~ 13066056 (+)
LOC113536323 eef1a1l2,LOC108256978,LOC108426655,LOC103044302,LOC107589444,LOC107696561,LOC107706209,LOC107654701,LOC107591637 coding upstream 33729 13052342 ~ 13056557 (+)
LOC113536322 eef1a1l1,LOC100526699,LOC103044018,LOC108426629,LOC107742828,LOC107654700,LOC107706208 coding upstream 38111 13048830 ~ 13052175 (+)
lypla2 lypla2,lypa2 coding downstream 690 13095231 ~ 13102090 (+)
gatad1 gatad1 coding downstream 12322 13106863 ~ 13110701 (+)
LOC113535917 LOC108256774 coding downstream 20655 13115196 ~ 13125279 (+)
lrrc14b lrrc14b coding downstream 31612 13126153 ~ 13130389 (+)
utp23 utp23,LOC102791607 coding downstream 929833 14024374 ~ 14027981 (+)
LOC117595825 NA non-coding upstream 403073 12684133 ~ 12687213 (+)
G342629 NA non-coding upstream 410956 12679115 ~ 12679330 (+)
G342628 NA non-coding upstream 413089 12676848 ~ 12677197 (+)
G342627 NA non-coding upstream 414935 12675141 ~ 12675351 (+)
G342621 NA non-coding upstream 441569 12648495 ~ 12648717 (+)
G342735 NA non-coding downstream 52504 13147045 ~ 13147846 (+)
G342836 NA non-coding downstream 206998 13301539 ~ 13301803 (+)
G343522 NA non-coding downstream 668543 13763084 ~ 13766601 (+)
G343620 NA non-coding downstream 874693 13969234 ~ 13994319 (+)
G343671 NA non-coding downstream 981916 14076457 ~ 14078541 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other upstream 9057 13077170 ~ 13081229 (+)
si:ch211-199g17.2 NA other upstream 135561 12904623 ~ 12954725 (+)
LOC113536228 nobox other upstream 297813 12785837 ~ 12792473 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other upstream 394774 12692007 ~ 12695512 (+)
sostdc1b LOC108257373 other upstream 1275013 11810109 ~ 11815273 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 1111180 14205721 ~ 14231844 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 other downstream 1138976 14233517 ~ 14250931 (+)
tnrc18 tnrc18,LOC107581723,LOC107742388 other downstream 2264252 15358793 ~ 15421748 (+)
G344364 actb2,actb,actbb,actb1,LOC102799139,LOC103039558,LOC107581721 other downstream 2339581 15434122 ~ 15484581 (+)
micall2a micall2 other downstream 3622930 16717471 ~ 16732200 (+)

Expression


Co-expression Network