snx13 (snx13)


Basic Information

Item Value
gene id snx13
gene name snx13
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6477323 ~ 6524126 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929800.2
gtgtgtgtgtgtgctatcaGTGTTGCAGTGTCAACGTGATGCTCAGTCCTTCGAAATCTGAAATTTGCATTATGCAAAAAAGGTGCTATGTACTGAAACAAGGAGACATGAGAAGCGAGTGAGTGACAAATTTGGCTCGTGTACGATGGGGAACCTGGTTACTGTGACCTCCTACAGAGCCTCAGATGGAACCTGGGATTATGTTTGTCTGCACCCGTGTCTACAGTGTGACCCATTTGGAGCCTTATTCAATCTGGGACAGgcCAGTCTGTCCATCTGGGGATGGTGGGGCCTGGGAATCCTGCTTTTCCTCATCACGTTCGGACCCTTTGCCATATTTTATTTGGCGTTTTATATCTTCTGTTTTCTTGGCGGGGGCTTCGCTGTCACGCTTTTATTTGGAAAGACGAATTCTGAAAAACACCTAGAGAAATGTGAACACTCCTACCTGCCCCCCACCCCAACAGGCATAGCAAAGACTTTAGAGGAGCTGAAGCAGGAGACGAAGCCCATAAAAATCGACCGGCGTCTGACGGGATCCAACTTCATCGACGAGCCTCTGCAACAGGTGATTCAGTTTGCTCTGAGGGACTACATCCAGTACTGGTATTACACGCTGAGTGAGGATGAGTCCTTCCTGCTGGAGATCAGACAGACGGTGCAGAACGCTCTCGTGCAGTTCTCCACGCGGTCCAAAGAGGTGGACTGGCAGCCTTATTTCACCACCAGACTGGTGGATGACTTCGCCACTCATCTCCGTGTTTTCAGAAAGGCCCAGGAGAGGCTGAACGAGAGGGAGGAGCCTAAACAACGTGAAGCCCCAGAGGAGCTGCTGGATGCGTTTTTTGAGACTGAGGTGGAGCTGGAGAGGAAGATCTGCAGAGATGTAGTGTGCACCTCCCATAAAGATGAAGAAGGGTTCCTGCGGGATCTGTGTGAGGTGCTGCTGTATCTCTTACTACCTCCTGGAGACTTCCACAACAAGAACATGAGATACTTCCTCAGGGAAATTTTGGCGAGAGGAGTTCTGCTGCCATTGATTAACCAACTAAGTGATCCTGATTATATCAATCAGTTTATCATCTGGATGaTCCGAGACTCCAGCTGCAACTATGAAGCCTTCATGAACATCCTGAAGCTGACCGACAAGCCAGCCGAGCTGGAGGCTGTCAAAGACAAAGTGCTGGAGGAGCTCCAGTACCTGCGCTCGCTAGATACCGCAGGAGATGatataaacactataaagaaTCAGATTAACAGTTTACTGTTTGTGAAaaaagtctgtgaaacaagaATACAAAGGCTACAATCAGGAAAGGAAGTTGATGCTGTGAAGCTAGCGGCAAATTTTGGCAAATTGTGTATAATCCCACTGGATCATATCCTGGTGCACAACATAGCACTTCAGTTTTTTATGGACTACATGCAGCAGGTGGGGGGTCAGGCGGATCTGTTCTTCTGGCTGACGGTCGAGGGATACCGGGTGACGGCACAGCAGCAGCTCGAGGTTCTACTGAGCTGGCAGAAGGACGGCAGGAAGCAGAGCGGGCAGACCAAGGGCCTGTTAAAAGCCGCTGCGCTCGGTGTCTATGAGCAGTACCTCTCAGAGAAGGCATCTCCCAGAGTGCAAGTGGATCAGGCCTCTGTGGACAGACTGGCTGAGAAACTCAACAAAGAGGATCCGACCCCGGAGATTTTCGATGACATCCAGAGAAAGGTGTATGATATGATGTTGAAGGACGAACGGTTCTACCCGTCATTTAAGCAGCACCCTCTGTACGTGCGCATGCTGGCCGAGTTGGACATGCTGAAGGAGCCGAGCTACCGGGGATCAGACGATGGAGACGCAGAGTCTTTTAATGGATCTCCAACTGGAAGCATTAATTTGTCTTTGGATGACCTCGCGAACGCCACCACAGATGAGTCTGTGCAActacatgcttttatttctgataCTGGCGTGTGTAATGACCACGGGAAGACCTACGCACTCTACGCCATCACCGTCTTCCGTAAGAACCCAGACGGTAGTGAGGACGCCTGGAAGACCTACCGCCGCTATAGCGACTTCCACGACTTCCACATGCGCATCACTGAACAGTTTGAGAACCTCAACTCGATATTAAAACTTCCTGGGAAGAAAACGTTCAACAACATGGACAGGGACTTCCtggagagaaggaaaaaggaCCTGAATGCTTATTTGCAGctgCTTCTGAATCCAGAGATGGTGAAAGCCTGTCCCATGCTGATACCTTACGTCCATGACTTTCTGGAAAACAAGGCATACAGCAAAGGCAAGGGCGACTTTGCACGAAAGatggacACCTTTGTGAACCCTCTGCGTAGCTCCATGAGGAACATGTCAAATGCTGTCAAGTCACTTCCGGACAGCCTTGCTGAAGGAATGACCAAAGTGTCGGACAACATGGGGCGCATGTCCGAGAGACTGGGCCAGGACATCCGACAGTCCATATTCAAGGTGCCGCCCTTAATTCCAAAGTCAGACATCGACCCTGAGCACTGCCGAGTGTCTGCTCAGCTGGATGATAATGTGGACGATAACATCCCACTGCGtgtgatgctgctgctgatggATGAGGTGTTTGACCTGAAGGAGAGGAACCAGTGGCTCCGCAGGAACATAAAGAACCTTCTACAGCAGCTCATTAGAGCCACGTACGGAGACACCATCAACAGgAAAATTGTGGATCATGTAGACTTCATGACGTCTCCAGAACAAGTAGCTGACTACGTCAAGAGGTTTAGAGATTCCTACTGGCCGAATGGAATCCTAGCAGAGACGCCACCACGCCGAGACAAGAGCATCCGCATGAGAACGAGAGTAGCAGCTAAGACTAACCTCCTGGGCATCATGCCAGACGAGCTGAAGCACATCATCGGGGCGGAAACCACACGCAAGGGCATCCTCCGGGTCTTTGAAATGTTCCAGCACCAGCAGCTGAACCGCCGCCTGGTCTACGTCTTCCTGGAGGGGTTTCTAGAAACCATGTTCCCTCAGTACAAGTTCCCCGAGCTGTTCATCAAGCTGCACTCACGCTCGCCCCGCATCCGCACTTATTCACAGAAAGTCCGCACCTTACAGAAGAGGTGACGCAGCGGCTCGGGCAGCAGGAAGTACCGCTCACAGAAGGGGAGGGACCGGCCCATGGTGAGGCTGGAGAAAGACACAGGGttgggggggtgtgtgtgtatgtgtgtatcggggggtgtgtgagacagagagagagagagagagagagagag
>XM_026929801.2
GGCATCCTGCACGTAAACCTCGCAATATGGAGACTCCTCGGAGAGTGCAGCGAGTCTGGAAGCTtgtctgtttttaaaagaaaaaacccgTAAGAGCGCTGTAACACAGCTGGTAAAATGTGCTGGGGTTAACCTGCGCGGCTTCTGCCTCGACGTCTCACACCATGTTTGCAGAGgcCAGTCTGTCCATCTGGGGATGGTGGGGCCTGGGAATCCTGCTTTTCCTCATCACGTTCGGACCCTTTGCCATATTTTATTTGGCGTTTTATATCTTCTGTTTTCTTGGCGGGGGCTTCGCTGTCACGCTTTTATTTGGAAAGACGAATTCTGAAAAACACCTAGAGAAATGTGAACACTCCTACCTGCCCCCCACCCCAACAGGCATAGCAAAGACTTTAGAGGAGCTGAAGCAGGAGACGAAGCCCATAAAAATCGACCGGCGTCTGACGGGATCCAACTTCATCGACGAGCCTCTGCAACAGGTGATTCAGTTTGCTCTGAGGGACTACATCCAGTACTGGTATTACACGCTGAGTGAGGATGAGTCCTTCCTGCTGGAGATCAGACAGACGGTGCAGAACGCTCTCGTGCAGTTCTCCACGCGGTCCAAAGAGGTGGACTGGCAGCCTTATTTCACCACCAGACTGGTGGATGACTTCGCCACTCATCTCCGTGTTTTCAGAAAGGCCCAGGAGAGGCTGAACGAGAGGGAGGAGCCTAAACAACGTGAAGCCCCAGAGGAGCTGCTGGATGCGTTTTTTGAGACTGAGGTGGAGCTGGAGAGGAAGATCTGCAGAGATGTAGTGTGCACCTCCCATAAAGATGAAGAAGGGTTCCTGCGGGATCTGTGTGAGGTGCTGCTGTATCTCTTACTACCTCCTGGAGACTTCCACAACAAGAACATGAGATACTTCCTCAGGGAAATTTTGGCGAGAGGAGTTCTGCTGCCATTGATTAACCAACTAAGTGATCCTGATTATATCAATCAGTTTATCATCTGGATGaTCCGAGACTCCAGCTGCAACTATGAAGCCTTCATGAACATCCTGAAGCTGACCGACAAGCCAGCCGAGCTGGAGGCTGTCAAAGACAAAGTGCTGGAGGAGCTCCAGTACCTGCGCTCGCTAGATACCGCAGGAGATGatataaacactataaagaaTCAGATTAACAGTTTACTGTTTGTGAAaaaagtctgtgaaacaagaATACAAAGGCTACAATCAGGAAAGGAAGTTGATGCTGTGAAGCTAGCGGCAAATTTTGGCAAATTGTGTATAATCCCACTGGATCATATCCTGGTGCACAACATAGCACTTCAGTTTTTTATGGACTACATGCAGCAGGTGGGGGGTCAGGCGGATCTGTTCTTCTGGCTGACGGTCGAGGGATACCGGGTGACGGCACAGCAGCAGCTCGAGGTTCTACTGAGCTGGCAGAAGGACGGCAGGAAGCAGAGCGGGCAGACCAAGGGCCTGTTAAAAGCCGCTGCGCTCGGTGTCTATGAGCAGTACCTCTCAGAGAAGGCATCTCCCAGAGTGCAAGTGGATCAGGCCTCTGTGGACAGACTGGCTGAGAAACTCAACAAAGAGGATCCGACCCCGGAGATTTTCGATGACATCCAGAGAAAGGTGTATGATATGATGTTGAAGGACGAACGGTTCTACCCGTCATTTAAGCAGCACCCTCTGTACGTGCGCATGCTGGCCGAGTTGGACATGCTGAAGGAGCCGAGCTACCGGGGATCAGACGATGGAGACGCAGAGTCTTTTAATGGATCTCCAACTGGAAGCATTAATTTGTCTTTGGATGACCTCGCGAACGCCACCACAGATGAGTCTGTGCAActacatgcttttatttctgataCTGGCGTGTGTAATGACCACGGGAAGACCTACGCACTCTACGCCATCACCGTCTTCCGTAAGAACCCAGACGGTAGTGAGGACGCCTGGAAGACCTACCGCCGCTATAGCGACTTCCACGACTTCCACATGCGCATCACTGAACAGTTTGAGAACCTCAACTCGATATTAAAACTTCCTGGGAAGAAAACGTTCAACAACATGGACAGGGACTTCCtggagagaaggaaaaaggaCCTGAATGCTTATTTGCAGctgCTTCTGAATCCAGAGATGGTGAAAGCCTGTCCCATGCTGATACCTTACGTCCATGACTTTCTGGAAAACAAGGCATACAGCAAAGGCAAGGGCGACTTTGCACGAAAGatggacACCTTTGTGAACCCTCTGCGTAGCTCCATGAGGAACATGTCAAATGCTGTCAAGTCACTTCCGGACAGCCTTGCTGAAGGAATGACCAAAGTGTCGGACAACATGGGGCGCATGTCCGAGAGACTGGGCCAGGACATCCGACAGTCCATATTCAAGGTGCCGCCCTTAATTCCAAAGTCAGACATCGACCCTGAGCACTGCCGAGTGTCTGCTCAGCTGGATGATAATGTGGACGATAACATCCCACTGCGtgtgatgctgctgctgatggATGAGGTGTTTGACCTGAAGGAGAGGAACCAGTGGCTCCGCAGGAACATAAAGAACCTTCTACAGCAGCTCATTAGAGCCACGTACGGAGACACCATCAACAGgAAAATTGTGGATCATGTAGACTTCATGACGTCTCCAGAACAAGTAGCTGACTACGTCAAGAGGTTTAGAGATTCCTACTGGCCGAATGGAATCCTAGCAGAGACGCCACCACGCCGAGACAAGAGCATCCGCATGAGAACGAGAGTAGCAGCTAAGACTAACCTCCTGGGCATCATGCCAGACGAGCTGAAGCACATCATCGGGGCGGAAACCACACGCAAGGGCATCCTCCGGGTCTTTGAAATGTTCCAGCACCAGCAGCTGAACCGCCGCCTGGTCTACGTCTTCCTGGAGGGGTTTCTAGAAACCATGTTCCCTCAGTACAAGTTCCCCGAGCTGTTCATCAAGCTGCACTCACGCTCGCCCCGCATCCGCACTTATTCACAGAAAGTCCGCACCTTACAGAAGAGGTGA

Function

symbol description
snx13 Predicted to enable phosphatidylinositol binding activity. Acts upstream of or within negative regulation of cardiac muscle cell apoptotic process and negative regulation of extrinsic apoptotic signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; heart; liver; and skeletal muscle. Orthologous to human SNX13 (sorting nexin 13).

NR:

description
sorting nexin-13-like isoform X7

GO: NA

KEGG:

id description
K17925 SNX13; sorting nexin-13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929800.2 True 3267 mRNA 0.51 26 6477323 6524126
XM_026929801.2 False 3029 mRNA 0.51 26 6479964 6523974

Neighbor

gene id symbol gene type direction distance location
twist1a twist1,twist1a,LOC108257132,LOC107755947,LOC107709721,LOC107667574 coding upstream 91643 6384201 ~ 6385680 (+)
LOC113536247 ferd3l,LOC102791589 coding upstream 95986 6380160 ~ 6381337 (+)
polr1f twistnb coding upstream 126594 6345471 ~ 6350729 (+)
sp8a LOC108257401 coding upstream 202311 6272947 ~ 6275012 (+)
cdca7b cdca7l coding upstream 279708 6188169 ~ 6197615 (+)
LOC113536295 ankrd28,LOC108256911,LOC108441435,LOC107745379,LOC107596646 coding downstream 4282 6528408 ~ 6571258 (+)
znrf2a znrf2,LOC105939633,LOC106531196 coding downstream 97090 6621216 ~ 6634193 (+)
clptm1l clptm1l,LOC107655116,LOC107694764 coding downstream 129095 6653221 ~ 6662882 (+)
rplp1 rplp1 coding downstream 139967 6664093 ~ 6666353 (+)
LOC113536346 tuba4l,LOC108256914,LOC108437766,LOC107669576,LOC107564211 coding downstream 249193 6773319 ~ 6775535 (+)
LOC117595885 NA non-coding upstream 157549 6313485 ~ 6319774 (+)
G339167 NA non-coding upstream 275700 6200493 ~ 6201623 (+)
G339159 LOC108256777 non-coding upstream 301726 6174321 ~ 6175597 (+)
G339126 NA non-coding upstream 349039 6116749 ~ 6128284 (+)
G339055 NA non-coding upstream 488831 5987811 ~ 5988492 (+)
G339279 NA non-coding downstream 2269 6526395 ~ 6527094 (+)
G339290 NA non-coding downstream 54677 6578803 ~ 6645955 (+)
G339300 snrpd1 non-coding downstream 124053 6648179 ~ 6651826 (+)
G339616 NA non-coding downstream 426446 6950572 ~ 6951822 (+)
G339618 LOC108429093 non-coding downstream 428936 6953062 ~ 6959284 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 133414 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1696937 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 1714721 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 1724654 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 1809067 4616324 ~ 4668256 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 80479 6604605 ~ 6616023 (+)
G339324 NA other downstream 186889 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 1716571 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 1758834 8282960 ~ 8285204 (+)
sem1 NA other downstream 2388802 8912928 ~ 8915846 (+)

Expression


Co-expression Network