ppan (ppan,LOC107711268,LOC107672501,LOC107670430,LOC103392573,LOC105905764)


Basic Information

Item Value
gene id ppan
gene name ppan,LOC107711268,LOC107672501,LOC107670430,LOC103392573,LOC105905764
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5446993 ~ 5455237 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929816.2
GTTATTTTTCCAACCCGTATTCCTAAAATTTCCGCCTCCTATATTATGCCCGGCTTAACTAGCCAATCAATGAGCTTGACCGTTAACCTAAACCAATCGGAATGAAGGAGGCGGGAACTGAGTAGCCAATCATAGAACAGAAGAGCGGGCTTGTCAGAATGCGGGTGGGGAAACACGCACTGGCGTGCAGCGTGGTTTCTGATGTGTGCTCCGGTTAACTAACCCTGAGGGCTAGCAACGAAAATGcggtttattattaaatagtacTCCATGTTatagtctgattttttttatttaacgtttGTTGTTTAATTTATCAGTTGAAAAGATGGGGAAAAGCAAGACTAAAAACCAGAAGAAGGCACGCGTAGCTGCCAATCACGTGGCCGAGGAGACGTACGGAAGCGTGCCACACTCCTTCGTCTTTCACCGTGGCCAGATCGGGAAGAACGTGGATCAGCTGATGATGGACATGCGGCGTGTCATGGAGCCGTACACGGCACAGTCCTTAAAGgTTCGAAAGAAAAACGTCTTAAAAGATTTTGTGACTGCAGCAGGACCATTGGGAGTCACGCACTTCCTTGTCTTCACCAAAACTGAGAACAGTGTTAACCTGAGACTGGCACGACTTCCTAAAGGCCCCACTGTCCATTTCCAGGTCACTAAGTACACTCTCATTAAGGACGTAGTTTCATCTTTAAAGAGGCACAGgatgcatgagcagcagtttactCATCATCCACTGCTGGTGCTGAATAATTTTGGGATAGAGGGCATGCATATCAAACTGATGGCTACCATGTTTCAGAACATGTTCCCTTCCATCAACGTGCACAAGgtCAACCTGAACAACATAAagaggtgtgtgttggtgaattACGATCCTGCATCTCAAGAAATAGAGTTTCGGCATTACAGTCTGAAGGTGGTCCCTGTGGGCATGAGCAAGGGTGTGAAGAAGCTCTTGCAGGAGAAGTTCCCTAACATGAGCAAACTGGAGGACATCAGTGAGCTGCTTCTGAAGGGTGTAAACCTTTCGGAGAGCGAAGCAGAGCAGGACGGCGAGCACAACATCACCGAGCTGCCTCAGGTGTACTCAGGGCGCGGGAACATGAGGTCGCAGCAGAGCGCTGTCCGACTTACTGAGattggaCCCAGAATGACCCTGCAGCTGGTGAAGATTGTAGAAGGCATGGGAGAGGGGAACGTGCTTTATCATTCTATTATGACAAAGAGCGAGGAGGAGATTCAGGAGATTCTGAGGAGGAAGGAGGCCCGTCTGAAGGAGAAAGCAGAACGCAGGAGCCAGCAGGAGCAAAACGTAGCCCTGAAGAAGGAGAAACGAGACGAAAACAAGAAAAAGAGTCTGGAGGGCATGAAGAGGAAACGGCAGCAGGAAGGGGCTGCGTCTGATGACAGTGAAGTGGAGGATCCTGGGATGCAGGAGGACCAGCCTGAAGCTGAGGAGTCGGAAGACGAGGCAGAGTATTACAGACAGGCCGttggagaggaacctgatgaaGATATGTTCCCCACTGCAAAGAGGAAACATGGCCCAGGCAAGTCACGCATGCCCTTTAAGAAGAGGAAACTGTCTATGTCAAAAGCTCCTGGTGAAGACAAATCCAGATCCAAACCTACTGGCAAGGCTTCTTTTGGTGCTAAAAACTTTGCTGGTAGGAAGTTTGGCGGGAAGAACATGGGAAAAATTGCAGCAGGAAACAAAGGATTTAGAGCGGGAAAAACGGCAGGGGTCAGCAGCCGGTTTGGGAAGAGTAAAGGAGGAAAGAGGTTTGGAGGAAACAAAGGGGAAAGGTTTGGGGAAAAGAAAAGTGGGGCTCAAAGTTCAAAGGGGAAAGGACAAAGACCAAAAACCGGCTCTGCATTTAAAGGAGGCTCGAGGGGAGGACAAACAAAGAAGGActtcaagaagaagaaggaaaaaaggtgAAGATAAAACATGAGCCAGGATCTACACAGCAGTGACTGCACTAGCAGAACGCAACTTGGTGGTGGCGATGTTGCCAGTTTGAACTGCTAATCTGCTAAAGCATCTGCGAAAAGACTGCAATCTATCTAAAGataaatttgtgttttgtaaaaatgttaatgaatgtttatTGCATTTATAGCAATAAATAATGAGTCTTTCATAAAA

Function

symbol description
ppan Predicted to enable rRNA binding activity. Predicted to be involved in ribosomal large subunit assembly. Predicted to be located in nucleolus. Predicted to be part of preribosome, large subunit precursor. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; musculature system; and sensory system. Orthologous to human PPAN (peter pan homolog).

NR:

description
suppressor of SWI4 1 homolog

GO: NA

KEGG:

id description
K14859 SSF1_2; ribosome biogenesis protein SSF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929816.2 True 2158 mRNA 0.47 12 5446993 5455237

Neighbor

gene id symbol gene type direction distance location
olfm2a olfm2,olfm2a,LOC107563315 coding upstream 192730 5143226 ~ 5254263 (+)
col5a3a col5a3,LOC107587984,LOC107757338 coding upstream 350720 5014830 ~ 5096273 (+)
LOC113546287 rdh8,LOC108257005,LOC108429652,LOC105905727,LOC107563320 coding upstream 559648 4877395 ~ 4887345 (+)
camsap3 camsap3 coding upstream 606471 4798341 ~ 4840522 (+)
xab2 xab2,LOC102796593 coding upstream 652435 4781291 ~ 4794558 (+)
LOC113536209 LOC108257204,LOC108257205,LOC108257203,LOC108257207,LOC108257206,LOC108256855,LOC108257209,LOC108261875,LOC108261620 coding downstream 7818 5463055 ~ 5467361 (+)
LOC113536250 LOC108257204,LOC108257207,LOC108257205,LOC108257203,LOC108257206,LOC108257209,LOC108256855,LOC108261875,LOC108261620 coding downstream 15325 5470562 ~ 5472111 (+)
LOC113536275 LOC108257203,LOC108257204,LOC108256855,LOC108257206,LOC108257209,LOC108257205,LOC108261875,LOC108257208 coding downstream 18705 5473942 ~ 5511202 (+)
LOC113535910 LOC108257332,LOC108257205,LOC108261620 coding downstream 46997 5502234 ~ 5511202 (+)
eif3g eif3g,LOC107711270,LOC107672439,LOC107754044 coding downstream 57859 5513096 ~ 5520547 (+)
G338799 NA non-coding upstream 14729 5431849 ~ 5432264 (+)
G338683 NA non-coding upstream 54801 5387988 ~ 5392192 (+)
LOC117595846 NA non-coding upstream 60841 5377206 ~ 5386152 (+)
G338658 NA non-coding upstream 205409 5241325 ~ 5241584 (+)
G338246 NA non-coding upstream 715888 4718197 ~ 4731105 (+)
G338814 dnmt1 non-coding downstream 69803 5525040 ~ 5526609 (+)
G338842 NA non-coding downstream 271941 5727178 ~ 5728306 (+)
G338961 NA non-coding downstream 399421 5854658 ~ 5855430 (+)
LOC113536203 NA non-coding downstream 520635 5975872 ~ 5981732 (+)
G339055 NA non-coding downstream 532574 5987811 ~ 5988492 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 666607 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 684391 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 694324 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 778737 4616324 ~ 4668256 (+)
G338163 NA other upstream 1091964 4352522 ~ 4355029 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 878752 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 1149368 6604605 ~ 6616023 (+)
G339324 NA other downstream 1255778 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 2785460 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 2827723 8282960 ~ 8285204 (+)

Expression


Co-expression Network