sync (sync)


Basic Information

Item Value
gene id sync
gene name sync
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11768970 ~ 11773563 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929909.2
aGCCTAAGTTGCCTGGGTGACTCGGCAGTCTGGGAGAAAGAAACCAGATGTCCCGTGTCTCTCccttattttctgacttctactgGCTCTTTCTCACTACTTGGATATTGCACTGAGACTGTCGGGGAAAGAAACCTAATGACCGTGGTAACAAGCTGAAAATGGCTGACGAAGATATTGACTTGGAGGAACCCTGTGGGTCTTTTTCTGAGCCCAAGGAAAAACATAATCCATTATTTATtgaggaagatgatgaagacTACTTTGAAGATTGCTTGGAGGAGATAGAGGCTGCCCTTGCTCTTCCTGGTGATTCCATGTCCTATTCACAGAAATGTCAGGAACATTTGAATGCTGAATTTAATGTACTTATGAGACAGATGCTGGCACAGCTAGATGAATTTGAAGCCACCCATGAGACCAAATCTACTCTACCAGCTTTCTTCGCAGAAAGAGAGAACATGTTAGTAACAAATTGCTTCAACGATAGTGGCGAGTATGAAGACTATATTTCAGACACAGCAGAATCTATGGCAGTAGTTGAGCCCGAAGGCGGCACTGTTGAAACAGGACCAGAGCTGTCTGCAACCACGGAGCTAAAGGAGCTGGGGACAACTTTTGAGAGCTGCATTGAGGAGGTGAGCCGACTAGAGCGCAGGAAAGAGGAGCTAGTGCAGGAGCTTTTGGAGCTGGAGAAGCCCATGGAGGAGGAGACTCATGCTTTGAGAAGAGAGCTGGAGGAGGCCCAGAAGCTCCTGTCCAAGGCCAAGCTGCAGAAGCAGAATTTGCTGGATGAGATGCGACTCTTCAAGAGACGCTTGTTTGTTGCTGCCAGGGACTGTGCACAGAGCCAGATGACCTTGGTCATACAGCAGAAAGAAGTGGAGCAGCTAAAGGAAGAACAGGATGAGATGAAGGCCTTTGTTGAGAAGTTAATAAAAGTCATTGAACAGCTTCATTCTGAACACCAAAGCCAAGTGCAGGCCCTACAAAATCAGATGGACAACATGACCCAGGAATCCAGCAAGGACAAGACACACTCGTACCTGTCCCAAGGCCGACGTGCATCCCTCGACCTACAGCAGTACCTGCAGGGTGGAATCAAAGCACTGGAGGAGTGGTATGAGCCCAGACTGGTGGCCTTACTAAAGAGACGACAAAGCAGCACTGATGCTTTAATAAAGTACAGGGAGCAGTGCCAAGAGCTGAAAACCCAACTGGGGCCCCTAAAAGAGGAAGAGCAGAGGCTGGGACTAGAGAGGGCCCGACTGGAGGAGCGCATTCATCTGATGGAGAAGCAGAGAAAGGAAAATGTGGAGCAATACCGTgaAACAATAGACCGCCTAGAAGAGAGCAGCCGAGAACTGAAAACCGAACTTCAgatacaaataaataagataaaagaGATGGAGGAACTCAAGAACAATCTGGCCAAGCAACTATACTTCTATAGagAGTGTGTAGAGAGACAACAACCTCAGGAGATCCTACTGATGGAAGAGAAAACCTGATCGATGAAGACGAACATTGCCCAACGTTGCACAGTTTGGTATTAGTGACAGAAATTCTTCTTGGTGTTTCTACAGTATGGTCTGATTGTTTAattctgaaatgtaaataatctCTCATTGCTCTGCCATAATGTTAACAGCATAAACATGCATGTGGGTGCCCTTTATAAATATTCCAAAGCAGGCAGAAGGTAATATGAAATGTACCAGCACCACTCAGCCTCTCTACAATGTCACATCAGCAAGGAATGTGAGATGGAGACTGCCCAGATTTTTATCTGCCCACTTAAACAGAACTCTCTAGATGTACCTGCACTGCTGACAGGGATGTGAGTCAGAGTGGAGGAAATAAAGCTTTTATACACAGTCTGAGTGCTAGTGACTTGTCTTGACCACATGATATGACCGCAAATAAGATGAGACACGAGAGAACATGGACTTATTAGGGCATGTTCTCAGACCTCTGAGAACATGCTGTCTGAATGACGCCGAGCAGGTTTAGATAAGCCTCAATAATAAGACGGCTGAAGCACTTTATTATGATCAGTATGAACATacttaaataaatcaaaatgtttGAGCCAAATGGTATAATCATTATTATGGCAGTTCGATGAAAAACAGTTTATTCTCAATGTTCTGTACAACAGTGTGGACATAAAGAAagacactgaaaaacacaaaatgatttTAGAATATTAAAGACAATAACATGACATTAGACCATTGTTGAGGAAAAGTACAAAATTAAGAGTACACAAGTCACCCTGTGGACCCTTGATAACATTTGCTTGAATGACTCCATTTTCAgccatgtaaaaataaatctaaaataagtCACCTACTGACATCCACCACAATTTGACCATGGTAATTAAGTACGTGGGCCTAAGcatcttttgattttaattttacatcCTTTTACCCACAACAACGCCTTAGAATGTGAAGGCTATGggataaacatttaaaaaaaaaaaaa

Function

symbol description
sync Predicted to be located in intermediate filament. Orthologous to human SYNC (syncoilin, intermediate filament protein).

NR:

description
uncharacterized protein LOC110496755

GO: NA

KEGG:

id description
K10377 SYNC1; syncoilin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929909.2 True 2493 mRNA 0.43 5 11768970 11773563

Neighbor

gene id symbol gene type direction distance location
yars1 yars,LOC107687080,LOC107691530,LOC107724337,LOC107709269 coding upstream 53149 11706658 ~ 11715821 (+)
mfsd2ab mfsd2a,LOC107687081,LOC107724351,LOC107568806,LOC107584275,LOC107709268,LOC107691531 coding upstream 63853 11690437 ~ 11705117 (+)
fam49al fam49a,LOC108257369,LOC103035846,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC101166565 coding upstream 199027 11541503 ~ 11569943 (+)
pef1 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding upstream 477388 11284533 ~ 11291582 (+)
cx30.9 NA coding upstream 485742 11275826 ~ 11283228 (+)
LOC113536236 LOC108257374,LOC107702070,LOC107584324,LOC107724274,LOC106588710 coding downstream 24493 11798056 ~ 11806421 (+)
meox2b LOC108256791,LOC107724325,LOC107584352,LOC107702081,LOC107696195,LOC107709256,LOC107568803 coding downstream 59027 11832590 ~ 11841066 (+)
LOC117595868 NA coding downstream 95652 11869215 ~ 11871010 (+)
si:ch211-57n23.4 si:ch211-57n23.4,LOC108256859,LOC108424704,LOC107593575,LOC107722127,LOC107731740,LOC107670070 coding downstream 173787 11947350 ~ 11968642 (+)
gatad2b gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107696601,LOC107591599 coding downstream 250331 12023894 ~ 12063869 (+)
G342079 NA non-coding upstream 179745 11589018 ~ 11589225 (+)
G342067 NA non-coding upstream 185115 11583642 ~ 11583855 (+)
G341890 NA non-coding upstream 294991 11385036 ~ 11473979 (+)
G341894 NA non-coding upstream 449893 11318755 ~ 11319077 (+)
G341445 NA non-coding upstream 1317408 10450465 ~ 10451562 (+)
G342190 bzw2,LOC107724358,LOC107568798 non-coding downstream 8703 11782266 ~ 11784980 (+)
G342189 bzw2,LOC107709265,LOC107724358,LOC107691535,LOC107702135 non-coding downstream 13510 11787073 ~ 11797795 (+)
G342208 NA non-coding downstream 89683 11863246 ~ 11930057 (+)
G342333 NA non-coding downstream 502183 12275746 ~ 12275952 (+)
G342496 NA non-coding downstream 614221 12387784 ~ 12388775 (+)
dlgap3 dlgap3 other upstream 295647 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 474614 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 1287000 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 1571968 10193747 ~ 10197002 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 2539332 9224604 ~ 9229638 (+)
sostdc1b LOC108257373 other downstream 36546 11810109 ~ 11815273 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 918444 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 1012274 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 1131060 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 1303607 13077170 ~ 13081229 (+)

Expression


Co-expression Network