slc39a4 (slc39a4)


Basic Information

Item Value
gene id slc39a4
gene name slc39a4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5927706 ~ 5944224 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929973.2
AGATGAGAGATCATGTGGGTTTGTGAGGTAAATTTGACCAGGCTAATTTGTTCCCTCTTTTATAAGACGTCGTGGAGCGCGAGGCATCAGGGGACCAATCAGGTGTGAGTTGAACGGGCACGAGAAGCCTGTACCTGTGAAGCCTTCACCTGTAAATGCACGAGACCAAGCTGAAACAGCGGACAGTGTCGCGGTCACCTCCAGCCACGTGCCCCTTCTATAAAACCCGACTGTGTGAGTTTAGAGAAAGCTAAAACAAAGTGAGCAGTCATGCTAAGCGTGAGGgttatgttgttattttgtctCGCTTTGCTCGCTGTTTGTCGAGCCGCTCCGGAGGACGTGTACATGAAGGTGGTTCGCTTGCTGTCTCCTGGGGAAGACTACCTGAGTGAAACCGCGCTTCACTCCTTTTTCAAACTTCTGGAGAAACGTGTGCAGTGTGCCGGCGTGTCGTGTGGAAAGtgcctGTCGGAGGAGAGTGTAGGGCAGCTGGTGAGTAACTACTCCAGCTCCAGTGGTTTGCAGGTGGAGGGTTTCTTCAGGTTGGCTGCTGGATGCTCTCTGCTGCTCAGCTCTCCCTCAAACACCTGCATGGCCATCACAGAGGGACGCTGGGAACAGGAGACAAGACTCTTCATCCACACACTGTTGGACCACAGTGAGCACAGCCTGGATGAGCTCTTACATGATATCGAAGAGCATTATCTACCTGAACATCACAATGAGCACTGCGTCACTCTGAACGACATCCTGATAGAGAGCGAAGTGACTCTGCCTGATGGAGACCATCATCATAGTGACCCTCACACTGACCTCCATACTGTGTTGGGTGTTATAATCTACCACGTCTTACTGGGAGACTGCATCACCCCTCACAGCCTTCCTGCAGAGGACTTCTTCCTGGATTACATATTCAACCAGTTTGGCCCAGACAACATCACTGTTCAAGACCTCGACAGGTTGATGAAAGCTCTGAACCTGGGAGAGAATAAGGGTAATGACCATGAGCATGACCACGAGCATGACCACAGCCACGAGGCCCATAATGAAGACATGAGACTCGTCCAACATGATGAAGAGAGCCTCAGGCAGAGTCGCAATGAGCCTCGGGCCTCCAACAACAGCTGGGACACGGTCTGTTTCCATGCTGAGGAGTTGTTGAAGATCTACCAGTTGAACAGCTCAGGACTGGACAGAGATCAGTTCACTCGGCTGAGCCCAGCTCTGATCCAGCAGCTCCTTAGTAATGCCTGTACAGAGACCAAACCACAGACGGTGGTGCCCGACTCCCTCAGCACCGCAGAGCGATATGTGTATGCTACCCTGGCCAACATGGTGATCTGTCTGGTTGCCATGTTCGGCATCGTGGTGCTGCTGTGTACGTCCTGCAGCGGCCTGTTCCAAATGTGTATTCAGTTCTGCATCAGTCTCGCTGTGGGCTCGCTGACGGGTGACGCGCTGCTCCACCTCCTTCCCATGttcTTGGGGATACATGAGCACAGCGATGGAGCAAGTGAACACGCACATGACACTACGTACATCTTTAAACTGCTGGTGCTTTTGGGAGGGATCTATTACTTCTACCTGATGGAGACCATCTTCTCAATCATCacttacaaaaacaaacactctcATCACCATGATGACGAAGAGCCACACCACTGTGACCATGATAAAGTCCTGCAGATGtaccagagagagaaaaagagcaaactCTCCACATCACAAGCAGATTTGGTAGATGGGGATAAAAAGTCCTCCCCAGAAGCAGAAGCAGCCTCTCACACAAGAGAGCAGCGCCTGCTTCCATATATGATTACAATCGGCGATGGCATTCATAACTTTGCAGACGGCCTGGCCATCGGCGCCGCCTTTTCACTCTCCTGGCGCTCAGGATTGGCTACGTCTCTGGCTGTGCTCTGCCATGAATTGCCACATGAGCTGGGTGATTTTGCTGTGCTGCTGCACTGCGGCGTGTCGGTGAAGAAAGCTCTGCTGTTAAACGTGGGCAGCGCTCTGACCTCTTTTATTGGTCTCTACATTGCTCTCTCGATCTCCACCGACTCTGCAGCCAAAGAGTGGATAGCAGCAGTCACAGCAGGCCTCTTCCTCTACGTGGGACTCACAGATATGCTTCCCACCATGATCCACGTGGACAGCAAGAGGCCATGGATGATATTTTTGCTGCAGAATCTGGGTTTGCTTTCTGGCTGGGGCATCCtactgcttctctctctttacGAGGACAAGATAGGCATCTAGAGAacaaccttttttattttaaaccccTAATGGTTAGTTTAATTTATGTCTGTCTTGTGGTCCAAATTTTTAGAAAACACACTATTATGAAACCAGATGTAAAGAGGGACAGATATACAAAGTGGGTCATGTCCATTTGATTTGACTGggaattgaatttaaaaaggCAACAGACACATATTTGGACATCAGAGcatagaaaaattaaaattttagaGAAATGCACATAAACCAATTAGGATTTAACTGAAATATTATTAGACCTGCCAACCCAAAGAGgaataatattacaaaaaaaaggaaaaaacctAGAACAGTACCTTTTCGATATAGACCTAGTCCTTATACAAACCGCATGTCTAATATCCCTCAAAGATCCTGTGAAATATTTCCATGTAGACAGCATTTTCACTGTTACTCAGTTCACATGTCTGAGCACAGGAGACTAAAGCAAAAAGTAGTGCCTTTAAACactatggaattatcattgcttttaaaattattgtaaggttttagattttatacatttaatcttttttttttagtcaaaatggtcagccttttttctcttccaGCCAAAAATGGACCTTTTTTGCCAGCCAAATTTCGGTGCATCCCTACTAAATACagttaaaatacattatatggccaaaagtttgtggacacctgaccatcacttgcttgttgaacatcccattccagatttagtccccctttactgttataataacctccact

Function

symbol description
slc39a4 Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in cellular zinc ion homeostasis and zinc ion import across plasma membrane. Predicted to act upstream of or within zinc ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in acrodermatitis enteropathica. Orthologous to human SLC39A4 (solute carrier family 39 member 4).

NR:

description
PREDICTED: zinc transporter ZIP4-like

GO: NA

KEGG:

id description
K14710 SLC39A4, ZIP4; solute carrier family 39 (zinc transporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929973.2 True 3003 mRNA 0.47 12 5927706 5944224

Neighbor

gene id symbol gene type direction distance location
zgc:63863 LOC108256764,LOC108429636,LOC107694745,LOC107566628 coding upstream 201311 5704671 ~ 5726395 (+)
cfap20 cfap20,cp080 coding upstream 253515 5669692 ~ 5674191 (+)
oxsm oxsm,LOC107655122,LOC107694752,LOC107557465,LOC107566624 coding upstream 258690 5665172 ~ 5669016 (+)
LOC113535991 NA coding upstream 269507 5632327 ~ 5658199 (+)
eif3g eif3g,LOC107711270,LOC107672439,LOC107754044 coding upstream 407159 5513096 ~ 5520547 (+)
LOC113536255 NA coding downstream 156322 6100546 ~ 6109043 (+)
LOC113536325 NA coding downstream 167877 6112101 ~ 6116707 (+)
cdca7b cdca7l coding downstream 243945 6188169 ~ 6197615 (+)
sp8a LOC108257401 coding downstream 328723 6272947 ~ 6275012 (+)
polr1f twistnb coding downstream 401247 6345471 ~ 6350729 (+)
G338961 NA non-coding upstream 72276 5854658 ~ 5855430 (+)
G338842 NA non-coding upstream 199400 5727178 ~ 5728306 (+)
G338814 dnmt1 non-coding upstream 401097 5525040 ~ 5526609 (+)
G338799 NA non-coding upstream 495442 5431849 ~ 5432264 (+)
G338683 NA non-coding upstream 535514 5387988 ~ 5392192 (+)
LOC113536203 NA non-coding downstream 31648 5975872 ~ 5981732 (+)
G339055 NA non-coding downstream 43587 5987811 ~ 5988492 (+)
G339126 NA non-coding downstream 172525 6116749 ~ 6128284 (+)
G339159 LOC108256777 non-coding downstream 230097 6174321 ~ 6175597 (+)
G339167 NA non-coding downstream 256269 6200493 ~ 6201623 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1147320 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 1165104 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 1175037 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 1259450 4616324 ~ 4668256 (+)
G338163 NA other upstream 1572677 4352522 ~ 4355029 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 389765 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 660381 6604605 ~ 6616023 (+)
G339324 NA other downstream 766791 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 2296473 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 2338736 8282960 ~ 8285204 (+)

Expression


Co-expression Network