trhrb (LOC108256856,LOC108441692)


Basic Information

Item Value
gene id trhrb
gene name LOC108256856,LOC108441692
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 7870877 ~ 7877775 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930015.2
CGAAATTCAGCACAAGTGCTGACCAccagagactgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagcagttctCCGCTGCCTCCCACTGAAGATATACTCACATGCTAAGAACCTCTTTGCTTTTAGCTGGGatcattttttcatcttatttatgTAAGCTAGAAAACGCACAGATTAGGTCTCAGTGGTACAGCAAGCCTCAAACATCTAACTCTTCAATCTAGGtagaatgaaattttaaaatctaaGATAAGACACGAGAAAAGAAGTTTGCTTCACCTGAAGTAAGTCTGAGCCGGACTTAGGAGTTGCAAGTAAGATGATGTAAATACAGCCCTAGTTTCATGTCCTTTTCTGCGTAAAGACATGGAGAACTTCACTTCTACCAACCACACGTTGGGCCCCTGGAGGGACCACAGTTTAGAATACAAGGTAATCAGCGCTCTCCTGGTGTTCACTATTTGCGTGTTGGGGATGGTCGGGAACGTGATGGTCATCTTGGTGGTGCTCACTACGAAGCACATGCGCACTCCAACCAACTGCTACCTGGTGAGTTTGGCCGTGGCGGACCTGACGGTGCTGACGGCCGCCGGGTTGCCGAGCGTCGCGGACAGCGTGTACGGCTCGTGGGTGTTCGGCCACGCCGGCTGCCTCGGCATCACCTACTTCCAGTACTTGGGCATCAATGCGTCGTCGTGCTCCATCACCGCTTTCACGGTGGAGAGGTACATCGCCATCTGCCACCCGATCAAAGCGCAGTCGCTGTGCACGTACGCGCGCGCCAAAAGGATCATCCTGGCCGTGTGGCTTTTCACGTCGCTCTACTGCGTCATGTGGTTTTACCTGAGCGATACGCAAGAGCTCGTGCACGGCGACGTGACCGTCGTGACCTGCGCCTACAGAGTGTCCCGGGAACTTTACTTACCCATATACTTCTTCGACTTCGGCGTGTTTTTCGTGCTACCTCTCGTGCTCGCGACCGTCCTGTACGGACTCATCGCGAGAATTCTGTTCCTGAACGCGTTACCGAAACAGAAGGTGAAGAACGGGCAGTATGGTTCCGGTATCAAACACTCAGTCCAGTGCTCGAGCACCACGGCGGCCTCGCGCAGACAGGTGATAAAGATGTTGGCAGTGGTGGTGGTTCTGTTTGCACTGCTCTGGATGCCTTACCGTACCCTGGTGGTGGTCAACTCGTTCCTCCAGGAGGCTTACCTGGACACCTGGTTCCTGCTTTTCTGTCGCACCTGTGTGTACCTTAACAGTGCCATCAATCCTGTTATCTACAACGCCATGTCGCAGAAGTTCCGCGCCGCCTTTAAgaggctttgcagatgcagtgCGAAGGCGCAGGCAAAGCAGACAGCCTACAGTGTGGCCCTGACCTACAGTACTGCTAAAGAAACGTCCATGATCGAGAGCACAGAGCATTTTTCAACAGAGATGGatgatctcacagaagagccAAATGATCTAAGAGAAGAACTGGCACCTAACTAGAAGGTTCTTGACAGAAATAGCTGGCTGAGTGATATTTAATCAGGgatcatttacacacaacagaatcacacacttacatataaaatacgtataatacactcatcatccacctgtacacctgctcattcatgcagttatctaatcagccaatcaagtggaTGAGGTATTCTTCTGATCTGTCCATCCACCTCgaggttcaacatgttgtgcattctgagatgcttttctgcttatcacggttgtaaagagtggttatttgaggtaCCGTAACATTCCCGTGTGCTCAAACAAGCCTGGCCATtgtcctctgatctctctcatcaacaaggtatttcAACTCACAAAACCACTGCtcaatggatgttttttgcaccTTTGTGTGTAAACTCTGTAGACTGCTGTGTATGAAAagcccaggagatcagcagtttctgaaatactcaaatcagcccatctggcactgGTCAAAGTCAAACAGATCACATCTTCTCCTGAtcctgatgtttgacgtgaaaaTTAcccaaagctcttgacctgtgtctgcatgatcttatgcattgcactggccacatgattggctgattggacaatttcatgaatgtgctggtgtatagatgttcctaataaagtggactgtgagtgtatattcgGATTACGTTATATGAACAGTCAGTACATGTTTACTTAATTCCTGAACCATACCACAACTTTAATGTGAAGAATTTGAGTGAAACTGCATATTTGCAAAATGTTGACGTTAGTAACAGGACACATTTTTTGGTAAACATTTGTGAGTGAGACTTTACCTCAGAAACAGCAGACCTGGTGTACTAAAAGCTGCCTACGGTGAATTAAAAGATTCTCCCAAACCACTTGAAATGCACTGGTGTATTGTCCAGGGTGTAAAATGTCATCAGAATGAGTTTTCATCTACTTTTCTGTATATGatacactgtcagaaaaaatAGTACTAAAATGTACCAAGGGTActtacagtttagtacctttttttctgacagtagGTGTAACACAAGGCtgctgtctgtatctgtttactgttccaaatatttgtatctatatctgtattgtGATTTAAACACAAAGTAGGCATGGCCTAAGCCTGtagagtttttttattttattgatttatttgtttatttttttattttgatgaaaTATGAAACCTATCATTATGCCTCcagaaacactgtaaacactggaaAACTGGAGAATTCTCCTCACCTCATCATTGCAGTTTATAACTGGCCTCAACTAAACATGTGCACTGGACAGTTTTGAATCCCTATCATGCAGATGTTATTTTTTGTGCCTGTCATGATACTTTCAAACAAATTTACTTGCTTTTTTCATGTTGATGAATGTGGTCTTTATTTGAGCCTCATTTCTGACAACTTCTTAATGCTGCATGATAGTAAAAATTTCCTGCTTGTGCAagttttttgttgcattttgcaggattccagtcctgatgcaACTCGAGTCTCAatcagatgccctgtgaactcTTCTGACAAgctttccaaaagaaaaaagagaatgatagtgaatttgtgtctgtatttgtatttatttaaaacacatcaTCTGTTCAATTAGAATAACGTATTCAGTTGCATCCCTATCTGAGAGTGTATATACATTTCCAATAAATTGTATTTCCATCATTTGCTTTTATGTATGTACCTATTCAGTGCAATCATGCTTTATTCTTGATGACAGTAATAAGTAATGGAGTTACTGTTCATAGTGGTGCTGTCTTgtttgaaattgtgtgtgtttatatgaagTCTGCAGTACAGTATTTGCTGCTACTCGTCAACATGCCCTGATAAATAACAGACACATAATGAGTTATGCTAAGCATTGGTTAAGAGCATCATAAGAGTGTACCAATAGACTCCTCTTCACATGACgaggaaaaaatgtaaatgacacCTACACACTAGTCACAATGATTAAGAAGGAAATGTAGAAACATGGAAGCACTGTTTAATGTGTAGAAAAAAAtacctttccttttcctttcctttgaacaaatatgtgtgtatttataaatgttttgtgtttgtaagCGATTTTGCCTTTTGCTGTTCATACTGGAAGAGAAAATTATGGCGTCTAGTGCATGTTGCTTTTATTGAGCTTTGttaatgtgtaaaattattcggtcaatgaatgaatttaattagTGTTACCATGAAATGATGACTGTGGATATTGTGCaggtgtttctgtattttttttatttttttttttttgtagcgtGGTTGCACAACAAACATCCTGAATTCCCAAAAAATACATGACACTTTTAAATGACAGGGAATCGCTTGGGAATAAAGTTAAATGTGTATGtgattcaaaatgaaaaaatgaagtggatttttaatgataatgatgaatCCCaggtaatatttttt

Function

NR:

description
thyrotropin-releasing hormone receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004997 thyrotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04282 TRHR; thyrotropin-releasing hormone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930015.2 True 3975 mRNA 0.42 2 7870877 7877775

Neighbor

gene id symbol gene type direction distance location
fbxl6 fbxl6 coding upstream 206572 7655705 ~ 7664305 (+)
nfatc1 nfatc1,LOC107739553,LOC107656600,LOC107563708 coding upstream 233906 7592626 ~ 7636971 (+)
atp9b atp9b,LOC107656641,LOC107563702,LOC107697002 coding upstream 290456 7534040 ~ 7580421 (+)
sall3b LOC108256805,LOC107090828 coding upstream 339376 7522930 ~ 7531501 (+)
galr1a galr1a,galr1,LOC108256854,LOC107697195,LOC107592101,LOC103037936,LOC108429058 coding upstream 393215 7474707 ~ 7477662 (+)
pkhd1l1.1 pkhd1l1 coding downstream 43657 7921432 ~ 7971682 (+)
gdf6b gdf6 coding downstream 95781 7973556 ~ 7976616 (+)
LOC113536206 LOC108256941,LOC108410903,LOC107717718 coding downstream 143026 8020801 ~ 8028040 (+)
LOC113535936 LOC108270576,LOC108256939,LOC108270587 coding downstream 165837 8043612 ~ 8047251 (+)
azin1b azin1b,LOC108256938,LOC108425019 coding downstream 174295 8052070 ~ 8061670 (+)
G339830 NA non-coding upstream 57013 7813632 ~ 7813864 (+)
LOC113535942 NA non-coding upstream 98421 7764753 ~ 7772456 (+)
G339804 LOC108256927,LOC108262328,LOC108441690 non-coding upstream 196222 7672980 ~ 7674655 (+)
G339721 NA non-coding upstream 403231 7449750 ~ 7467646 (+)
G339700 NA non-coding upstream 471807 7395074 ~ 7399070 (+)
G339965 NA non-coding downstream 10929 7888704 ~ 7889014 (+)
G340047 NA non-coding downstream 120308 7998083 ~ 7998288 (+)
G340056 rpl30,LOC107710097,LOC107556383 non-coding downstream 219394 8097169 ~ 8100677 (+)
G340146 NA non-coding downstream 356092 8233867 ~ 8237952 (+)
G340197 NA non-coding downstream 521443 8399218 ~ 8411358 (+)
G339324 NA other upstream 1153731 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 1254854 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 1526968 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 3090491 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 3108275 4757814 ~ 4762602 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 362922 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 405185 8282960 ~ 8285204 (+)
sem1 NA other downstream 1035153 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 1241239 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 1346829 9224604 ~ 9229638 (+)

Expression


Co-expression Network