galnt12 (galnt12,LOC108425758,LOC107724331,LOC107670286)


Basic Information

Item Value
gene id galnt12
gene name galnt12,LOC108425758,LOC107724331,LOC107670286
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9782215 ~ 9801084 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930023.2
TGGCAAAACTTTCTCTAGAGAGTCGACACTCATTTTCCATGAGGTTTTATTtacgggaaaaaaaaactctgcaatATTTCATTTGACGTTGTCATTTAGACGGGAAGTAGCTGTTACTTGTGGTTAATTAGCCAGAAACTAATGAGGGGAAAAGATTTGCATGGAGTTTGAGTCGCTACATTTGTGCACGAAAATGATTTGACGATGGCTCGCGagcctcctccctccctccctcctcctctcctccctcctccttccCAACTTCCTGTAGACCAAAGTGAACACTGTTAACTGTACagcagtgtactcaggagttcAGGAGTTCAGTAGTGCAGTAGTCCCTGCGTAATGAGGCGACAGAAAACTACAGAGGAAGCTGACTGAACTTAAGAAGGAAGTAATGGCACCGGGAAGCACTAACTGGAGCTGGATTAGTACTTTACACAAGAACTCTGAAGAAGTCTCTGTGATCTGacctggattattattattattattattattattattattattttccgtCAGTAGAAGTCTAATCTTGGTAGCAGTGAGTTCATCTAATCGTGTAAATTCGTCCTGCAGCCGGGGCGCGTGATCCTCCGGCGGTTTCCATTCCACTCATCTGCTCCATTTCCTTGTGCAAATGGCACTTCATATCGCCTCCAGTCCAGTCCACAAAGTTTCCCGGACATACTGAACGATCCCAAACCTTCTCATGGcatttaaataagaataaaaactaGCCAATCAGCGCCACGATGGCAATCCGCGGACGCAAGAGTCGCACCAAGTTGCTGCTGTTCTTCATCTGCGCGTCACTGCTCggatatttcatatttcacaaaAGCTCTGATGGGAGCCATGCGAATCGGAGAGGAGCTTCATCCGACCTAAACCCTGAGGAAGAGCCTGAGCTCCTGCGCAGACCTGTGTATGAGAAGCCAGCCTTAGACCCGGATGCGCTGGGAGAGCTGGGGAGAGCTGTTAAACTGGAGCTGActggagaggagaagagaaaagaagaagaaagtctGCAGAAACACCAGATCAACATTTATGTTAGCGACAAAATCTCTCTCCACCGCAGATTACCCGAAAAATGGAATCCACTATGCAAAGACCTGAAGTATGACTACCGGAGCTTGCCCACCACATCAGTAGTGATTGCCTTCTACAATGAGGCCTGGTCTACTTTACTGCGCACAGTGCACAGCGTGCTGGAAACCTCACCTGATATTCTACTGAATGAGGTCATCCTTGTGGATGACTACAGTGACAGAGATCATTTGAAGCAGCCTCTGGAGAACTACATAGCTGACCTGAGGAAAGTACGTCTGATCCGAGCGAGGAAGAGAGAGGGGCTGGTCAGAGCTCGGCTCCTGGGCGCCTCCATAGCCACAGGTGATGTGCTGACTTTCCTGGACTGTCACTGTGAGTGTCATGAGGGCTGGCTGGAGCCTTTGCTACACAGAATAAAGGAGGAACCCACTGCTGTCGTCTGTCCTGTAATTGATGTGATTGACTGGAACACGTTCCAGTATCTGGGCAACTCAGGAGAGCCTCAGATTGGTGGCTTTGACTGGCGCCTGGTTTTCACATGGCACGCTGTTCctgaatatgagcagaaacGCAGACACTCTCCTACTGATGTCATCAGatctCCAACTATGGCTGGGGGCCTGTTTGCAGTTGGCAAGAAGTACTTTCATTACCTGGGTACATATGACACAGGGATGGAGGTGTGGGGAGGAGAGAACCTGGAATTCTCATTCAGAATCTGGCAGTGTGGAGGGAGTTTAGAGATCCATCCCTGTTCCCATGTGGGCCATGTCTTCCCGAAAAAGGCTCCCTATTCGCGGAGCAAGGCTCTGGCCAACAGCGTGCGGGCAGCAGAGGTCTGGTTGGACAACTATAAGGATCTGTACTACCACCGCAACCCACACGCTCGCCTGGAGGCCTATGGAGATGTGACGGAGAGGAAGAAGCTAAGGATGCGTCTTGGCTGTAAGGACTTTAAGTGGTTCCTGGAGAATGTTTATCCAGACATCCATGTCCCAGAGGATCGACCCGGCATGTTTGGAATGCTGAAGAATCGAGGAATGTCTGACTATTGCTTTGACTACAATCCACCTAACGACCATAACGTGGCGGGCCACAGGATCATTCTGTATCCATGCCATGGCATGGGCCAAAACCAGTTTTTCGAGTACACTTCAGACAACGAGATCCGTTACAACACAAGGGAGCCCGAAGGCTGTGCCGTGGCCGATCCCATCTCCACCTTCCTCAGCATTAATCTGTGCCGGAAATCCCACCAACCCGTCCCTGaggaccaaaagtttgtgctcAGAGAGGATGATACTTTGTACCATGTCCAGACTCAGAAGTGTGTCGAGGCCTTGCAGAAGATTGACAACGGCAATCCTGGTCCTGCTCTCCGTCCGTGCACTGGTTCAGCTCACCAGCAGTGGTTCTTTCAGGAGAGGACATAGATTTAATAGGACAGCCTTACAGCACTTTCTGTACAGCACCAGAGCTTGAAAGGGCATCTGACTGAGGCAGATTCATGGTGATCTACAAGATTCACTGCTGTATCTTCCTCTTCATTTTGATGTTAGAAGTGAAGGTTCactcttttttatatatataaaaaaaacctttacaaCTGCTGCAGCTGAAATGGATTTGGAGCAATGACTTATTCCACTATAGTGATCACTGCCTCATTCCAAGTTTTTTTTGAATCTCTCATTCTGAAGTTTTTAAATTGAGATCTTAATTAGAATCactgatttttgtgatttttgttatCTCAGTGCAATAGATCTTACTCTTCATCAAATCAAATGCTCAGTGCTGCTGGCCGATATACTTTTAACacgtttaaacatttttttttctaaagtagCCTGGGGAAAAAGCCTAGAAAAATTCAAACTTTCACAGTAATCAGCTggtcatttgtgtttttaataaccTTGCAATGTCAGCTCCGTGGTTGGAGCATTGGGAAGGATTGctactcacagctccagtgtccccAGTTCCACCCTGAACTCAGTTTACTGTCGATGCGGAATTTCTTATGCTCTCCTTGTATCCGTGTggctttcctctgagttctccagtttcctcacacctcccaaAATCCTGATTtttggattggctatgctaaattgccactaagtgttaatgagtgtgtaaatatgtgtatgtgtgatatgtTCAAGTGGACTGGTACCTTGTTCAGGGTGTGCTCCTGCCTCATGcacagtgtttctgggataggctcacGATTAGGGGTGTAACCAAATAggaatacagatatgaataggaggaaagctcctatttttttctttaaaaaaaagcttggttCACAAGACATCTAGGtgataaaaaaatcatttaaaaacaacaacgtCTGTAATGCatttactgaatttatttatgacaTGCTGGCAGTGCTGgtatttctacctctgggtttttttttagtgtttccaGGGGAAAAGTGGTTGGGTTCAtatctggtttaaaaaaaaaaccttctggtttagaccacgcccactttgggttttaTTCTgcatacagatatgaatatttggagcagcAAACAGAcatagatacagatagtggcactgTATTATGCCCCTACTCCGGGTCTACCACGACTCTGATAAATGACAAAGATGCACTGCGTTGTTACAGTTCTAAAAGTCACATTGTCTATCAGTCACTTGTTTTTGTCAGCTTGATCACTTCATAACCTTTTTTAGCTGGTTAGAGAATTGAATGTCAGCAGTGGTGGGGGCTGTAGCTCTGCTGCAATACTCATTCCAAACCACTTGATGGTGCCAACTCCTCCATTTTtcttctgtgttgttctgtgtcctCCATGTTCTCTCAAACCCTGATCACTTGAAGCTGGTTTAAACATCTTAGATTGCTGTAGTTCAGACTGATGGTTTTAACAGTATAGAAGCATTTACTATGAATATGCTGATCTGAATATGCTGAAAACAGAACACGGTTGAACTGATACTGTTTTAAAGGTACATTGTAATTCAAGGGCACTATAGACAGATTTTAATGGATGAATATAGAATTGGACCCTCTTTTCTACCCAGTGATGTGCTCAGTGATAATTGGTGTGGAGTGTATGGATATAAACCTGTTTAGGTTGCTGAGTAAATGTTCTGATACTTGTTAATGAATAAGCAATATGTGACAATGATTGACCAGTAGATGCTGTAGGCTCTGTATTAACATTTGTTCATCCATGTTGAATATTTATTACTGCAGATTACTACTATAATAACTGATCTTGTGCATCAAGGAACAGccatttcttttcttatttataattttttcaaAGTTTCGGGTGCCTTAGCTGGTTAAAAGAGTTTCAGGGGTCTGAGACATAGAAAGTTGCTTAATAATATTTTGATGAATTTTAAACATGAGCCTAATTTGGATTAAAATATTGAGATACACACATTAGGAGTTTATAGAATTAAACATTTCAGGAACATTTCAGGAACTGTTTATTCAGACCGACCAGTGACCTTTGAGATACGGCACAGATGTTCATAAAACTTGCAGGGATAAACAGGTGGTTGTCAGATTGTTTATCTGTGGATTTACACTAGAGCACTGAGAGACCTTGCGCCATCGATCAAGTCTCAAAACACTGCATAGGATTGATCAGATGGTGAGAAGAAATCCAACAACTGGGCAGTTGCCTGTaatgctgatctcctgaagaAGCGTCTTATGagctgttaaaaatgaaattcaattaactttataaatattactttGTTGTATGATTCATTGAAttgaaatatataatgtatcaAACATGTATTAGACATGCCCACAATGTCTGATACTGAAGTAGCTATTGAATTAGCTGCTATCTAATATAGGTGATTTTGTTAAGGGTTTTTGAAAtaggttttgtttttgcacttttATATGAACCAATATCAGAGTGGAAGCATACTGAAAAGAAATGCCAGGCCTCTGCTTCATAGTTCGGGTTTCTTGATTGGAAAGgagaatgaaatattttacattttttttgtgtaaaatctaCATGATAATATGTAGCAAGAGTAAATTCAGATGATGGATGCTGTTATTTAAGTGACCTTAACATatctgaaattaaacatttaattcaatttcaaattCA

Function

symbol description
galnt12 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in colorectal cancer. Orthologous to human GALNT12 (polypeptide N-acetylgalactosaminyltransferase 12).

NR:

description
polypeptide N-acetylgalactosaminyltransferase 12 isoform X1

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930023.2 True 5197 mRNA 0.43 10 9782215 9801084

Neighbor

gene id symbol gene type direction distance location
poc1bl LOC108257092,LOC103026965,LOC108425761,LOC102236136 coding upstream 2504 9761655 ~ 9779711 (+)
pex1 pex1 coding upstream 164190 9604471 ~ 9618025 (+)
efcab1 efcab1 coding upstream 181866 9597569 ~ 9600349 (+)
LOC113536235 NA coding upstream 187683 9580915 ~ 9594532 (+)
calcr calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776 coding upstream 466264 9263761 ~ 9315951 (+)
LOC113536234 NA coding downstream 2952 9804036 ~ 9806104 (+)
gabbr2 gabbr2,LOC107670291,LOC107724329,LOC107710365 coding downstream 21619 9822703 ~ 10006532 (+)
abitram fam206a,LOC107710376,LOC107556369,LOC107556344 coding downstream 241340 10042424 ~ 10047887 (+)
ccn4a wisp1,LOC108425715,LOC107670277,LOC107724346 coding downstream 346565 10147649 ~ 10154191 (+)
wdyhv1 wdyhv1 coding downstream 386609 10187693 ~ 10190316 (+)
G341038 NA non-coding upstream 51246 9728928 ~ 9730969 (+)
G340967 NA non-coding upstream 112987 9627788 ~ 9669228 (+)
LOC113536134 NA non-coding upstream 216689 9557697 ~ 9565526 (+)
G340687 NA non-coding upstream 535167 9246479 ~ 9247048 (+)
LOC113536151 NA non-coding upstream 601001 9174943 ~ 9181214 (+)
G341468 NA non-coding downstream 597126 10398210 ~ 10398409 (+)
G341469 NA non-coding downstream 597869 10398953 ~ 10399867 (+)
G341449 NA non-coding downstream 636320 10437404 ~ 10458143 (+)
LOC117595845 NA non-coding downstream 645244 10446328 ~ 10447955 (+)
LOC113536353 NA non-coding downstream 648352 10449436 ~ 10454792 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 552577 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 648036 9119014 ~ 9134179 (+)
sem1 NA other upstream 866369 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 1497011 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 1510716 8240697 ~ 8271499 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 392663 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 673399 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 1491207 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 1513446 11314530 ~ 11473323 (+)
sostdc1b LOC108257373 other downstream 2009025 11810109 ~ 11815273 (+)

Expression


Co-expression Network