abitram (fam206a,LOC107710376,LOC107556369,LOC107556344)


Basic Information

Item Value
gene id abitram
gene name fam206a,LOC107710376,LOC107556369,LOC107556344
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 10042424 ~ 10047887 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930031.2
GAAGAGTGAATTTATTTGGAATTCAGCCACAGAACTCTGTGTTTATTCCGCATAACTGTTCCTTTATCGTCTTGTCAGTTCGTTTCTTTTCTAATAAGCcttttaataaagatttttaataaataaagacaacgaaataattatattttcagtttattGAGCACTTATGAAACGCAAAGCGCCTTTTTAGAGTTATTTCAGAAGCACAACGTCTATGTTTCCGACCGGTTCCTAATAACGGTTGGACACAGGGTGCAGGCTGCTTTGTGGTCCGTAATGGAAGCCGGTGTTTGGAGAGAGTATTAGTTGGTGTATTTGGTATTTGCGATGGCAGAAACACATGAGAGATCTCCATCTGTGATTGATCGCTATTATACACGATGGTATAAAACAGATATGAAAGGAAGATCGTGTGAAGACCATTGCATCCTACAGCACTCAAACAGgatcTGCATCATCACTCTTGCGGAGTCTCATCCCATCCTCCAGCAGGGCCGCAAAATCAAGAGCATCGATTACCGTATCAGTGACGGATGCAGCCGCCTGAACAACAAAGTATCTGGCAAATCAAAGCGAGGTGGTCAGTTCCTGACAGAGTTTGCTCCGCTGTGTAGAATAACGTGCACAGATGACACTGAGTACACCATCTTCAGCTGTATCAGAGGACGCCTCTTAGAAGTCAATGAAGACATCCTGAAACGTCCTGATCTGCTGCTGGAGAAGCCCTCCACTGACGGCTACATAGCAGTCATCTTACCCAAACTGGAAGAGAGCAAAACCATCACCAAAGGCCTTCTGACCAGAGAACAGTATGAGGACGTTGTCTCTAAACGAAGTACTCAACCGCAAGAGTCTCTCTGAAATCAACGTTACACAAATGACctcagcaaaaaagaaaaaatttaagATGACCAAGACTAAAGAACATTTTCATTTGATCcagtatatgtttatatttattactattttttattactattatttagttttgtactggatacaataataataataataataataataataataataataataataatgtagccAACACTGACTTGTTCCACCTTTTTGTATTGGGGCCAAATAActgatttaaataatttgaaatagTTTGAAAGATCTGACTAGTTAGCAGGATCAGACGTTTATTTGGACTTGCCAATGTTGGGTCAATTTGGTTATTACATGATGTGTATATTACCATAtttgcgcgcgcacacacacacacacacacacacacacacacaagattttgtaaatacacaaataaaggACACTGTCCacaatttaagaaaaataatgtatatttagACTTTCTTTGTTTAACAATCATTCAACTGTCAAAAGGATCCAAATGGTCCAAAACTAGTTTCACTCATGTTCATAGTTTCTCAGTCATCACTAAAGCTTACAGTCTGACTGCAGTGTTCATGAAACGACAATTACGAGCGTGTTCTGAAACTTCACACATGAACAGATACGTTTTGGACACTTCACTCAGCTTCCAATCATAACAAGTGAGACGTGAGGCAGAGAGGAAACGTAAGATTGTGCCGTCTGAACCACTCACTCCAAAGCAGTCAAGTGTTTTGATTTTCAGAAAGTCTTCATCCTGACCGTTTGGAGTTACTGTAGCAGAGCTCGGCATATTTCATGTTTCAAGTAACAGTATGAATCACAGTGACCTACAGGACAGTCCATATGAGGAGGCAGTTACTGTCACTacaattacacaaacaaaacttcCTTTTAATACCATAAAGATCACTTTTATACTAAAGTGACATTCTTCAGCACTGCTTTGCGGGAACACAGTAATTTTCGGCACGTTGGAAACATGAAGCCCGTGACATGGTGCCTCACGTCCTGGTGCTGACAGCCTGAGAGACGACGGAAACTGGACGTATTTGGCGTCAACGTGTAAATGAGGCAGATGCATTAAatacagtgtgtcagtgtccTACACTAAAACAACCGAGGAGGATTTCACTTATAATTCAAGCTATTCTGTTAACACGATATCACTTAGTGAAAAATATAGACTCCGTCTTAGCGGTAGCTTTTTTAACAGTAGTAAATAGCAGGGCAGTTTGGAATTGACCCCAAAACATGCACTGATTTatgtgaagagaaagagaaagtgtgtttctgttttttgttttgtttttttggtg

Function

NR:

description
protein Simiate

GO:

id name namespace
GO:0006546 glycine catabolic process biological_process
GO:0005960 glycine cleavage complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930031.2 True 2180 mRNA 0.39 6 10042424 10047887

Neighbor

gene id symbol gene type direction distance location
gabbr2 gabbr2,LOC107670291,LOC107724329,LOC107710365 coding upstream 35892 9822703 ~ 10006532 (+)
LOC113536234 NA coding upstream 236320 9804036 ~ 9806104 (+)
galnt12 galnt12,LOC108425758,LOC107724331,LOC107670286 coding upstream 241340 9782215 ~ 9801084 (+)
poc1bl LOC108257092,LOC103026965,LOC108425761,LOC102236136 coding upstream 262713 9761655 ~ 9779711 (+)
pex1 pex1 coding upstream 424399 9604471 ~ 9618025 (+)
ccn4a wisp1,LOC108425715,LOC107670277,LOC107724346 coding downstream 99762 10147649 ~ 10154191 (+)
wdyhv1 wdyhv1 coding downstream 139806 10187693 ~ 10190316 (+)
angpt2b LOC108256759,LOC108425532 coding downstream 549529 10597416 ~ 10620173 (+)
LOC113536281 NA coding downstream 1009218 11057105 ~ 11078437 (+)
cx30.9 NA coding downstream 1227939 11275826 ~ 11283228 (+)
G341038 NA non-coding upstream 311455 9728928 ~ 9730969 (+)
G340967 NA non-coding upstream 373196 9627788 ~ 9669228 (+)
LOC113536134 NA non-coding upstream 476898 9557697 ~ 9565526 (+)
G340687 NA non-coding upstream 795376 9246479 ~ 9247048 (+)
LOC113536151 NA non-coding upstream 861210 9174943 ~ 9181214 (+)
G341468 NA non-coding downstream 350323 10398210 ~ 10398409 (+)
G341469 NA non-coding downstream 351066 10398953 ~ 10399867 (+)
G341449 NA non-coding downstream 389517 10437404 ~ 10458143 (+)
LOC117595845 NA non-coding downstream 398441 10446328 ~ 10447955 (+)
LOC113536353 NA non-coding downstream 401549 10449436 ~ 10454792 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 812786 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 908245 9119014 ~ 9134179 (+)
sem1 NA other upstream 1126578 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 1757220 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 1770925 8240697 ~ 8271499 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 145860 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 426596 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 1244404 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 1266643 11314530 ~ 11473323 (+)
sostdc1b LOC108257373 other downstream 1762222 11810109 ~ 11815273 (+)

Expression


Co-expression Network