nfatc1 (nfatc1,LOC107739553,LOC107656600,LOC107563708)


Basic Information

Item Value
gene id nfatc1
gene name nfatc1,LOC107739553,LOC107656600,LOC107563708
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 7592626 ~ 7636971 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930035.2
GCGTGAGCTAGTGCGTCACGAAGACCCCGAGCAGCCCGGCACTTCATTTACAACTCCTGAATTAAAACGACGCAACGGgatttctaacacacacacacacacatacacacacacacaaaacctagtTACTAAGGCACATATCTACAGTTTGGATTTTGAATAAGCGCCTTTATAAATTATGCGCACTTTTCCGTGACAGCGTTTTGCATGCCACAGTTTGACAGAACTGACCATTTTTCTGTGAAGTTTTTGGAGTTGTACATAACTTGGACGGTTAACTTTCACCAAAGAGGTCGGAAGCATGAAATCAGCAGATGAAGATGCATACAGCTACACACCGAACATCAGCCTATCCCTTCCACTGAGTAGCCCTTGCCTTCCCACCCAGTACCACAACCTTCAGACCAgtccctccatctctgtctctataAGCCAACCTTCATCATTCTCCCCCAGTGAAGACATGGGCTCGATGGGATACTACCAATCATCTGGCCCCAATGGAGCCCCTGCTCTGGAAAGCCCACGCATCGAGATCACAGCTTATGGTCAGTTCCCTGAAGATGAGGTGGAAGAGAACAATGCACCTGTAGCTAAGCGCGTCAACTCTGTAGTGACTTTAACATTGCCTAGTGGTGAAGGTTACCGTGACCCTAGCTGCCTCAGCCCAGCTAGCAGCGTTTCGTCACGTAGCTGCCACTCGGAGGCTTCATCATATGAGTCAGGCTATTCGTGCAATTATGACAATTCATCACAGAACTCCCCATGGCAGTCACCATGTGTCTCACCCAAAGGTTCCTCTTCATTGCTGTCTGGAACCCTGGGCACCTCACCTCGCCAATCACCTACAGGATCTCCCCGCACCAGTGTGACTGATGAAAGCTGGACAGCACCTCGTGGCTCCCGCTCCAACTCCCCTTGTGGTGGGAAACGGAAATACAGCTTTAACAGCAACGCCTCTCACAAATATCATCCATATTCACCTAACCAGTCACCAGGGCTGTCTCCACAAACCTCACCTCGCCTCAGCATGACTGAAGACGCATGGCTGCCCAACACCAACCAGTACACCAATTCTGCCATTGTGGCAGCCATTAATGCCCTCAGCACTGATGGAATGACTGATATTGGAGAGGGGATTCCACTCAAGACCAGGAAAACCAGCATGGAGCATAACACTTCTGTGAGCCTCAAGATTGAGCCTGGAGGTGAGGAGACAGGCTCTGCAGAGCTCTGTCATGAGGACTACTCCACGTCACGCCTGGCATTTAAGAAGGAGGGCTACACCAGCTTTCTGGATGTACCACATCATCCATATTGGTCTAAACCAAAGCCTTACATCAGCCCATCCTTGCCAGCACTTGACTGGCAGCTGCCCTCCAGTTCTGGGCCATACAGCCTGCAGATCGAGGTTCAGCCCAAATCTCACCATCGTGCTCACTATGAAACAGAAGGAAGCAGAGGGGCCGTGAAGGCACTTGCCGGAGGACATCCAGTTGTTCAGCTTCACGGCTACATGGAGAGCGAGCCTCTGACTCTACAGCTGTTCATCGGGACGGCAGACGACCGTCTCCTGCGGCCACACGCTTTTTACCAGGTCCACCGCATCACAGGCAAGACCGTGTCCACACCCAGCCACGAGATCATGCAGGCCAACACCAAAGTGCTGGAGATTCCACTCCTGCCCGAGAGCAACATGAGGGCCATaattgaCTGTGCTGGGATTCTGAAGCTGCGAAACTCAGACATCGAGCTGCGGAAAGGCGAGACGGATATCGGGAGGAAGAACACACGAGTCAGGATGGTGTTCCGCGTCCATATTAACCAGCCCAATGGCAGGACCGTGTCCCTGCAGGTTGCATCCAACCCCATCGAATGCTcCCAGCGTTCTGCACAGGAGCTGCCTCTGGTGGACAGACAGAGTTTGGACAGCTGTCCTGCAACAGGGGGAGAGCGTATGCTTATCAGTGGTCATAACTTCCAACCTGACTCCAAGGTGGTGTTTGTGGAGAAAGGACAAGATGGTCATCACATATGGGAGATGGAAGCCAAAGTTGAAAAGGACACCTTTAAAACTACAGCTTTGCTTGTGGAGATTCCAACTTACCGAAACCAAAGAATATCCAGCCCTGTTTTGGTGAACTTCTACATATGCAATGGCAAACGGAAGAGGAGCCAATACCAACGATTCACCTACCTACCATGTAATGTTCCCACCATAAAGACAGAGCCACATGATGACTATGAGCTCCCTCGCCTGTGTGCACAGCAGCACTCCCCTAGCCTTGCCAAGCCGTATTACGGTCTGCAAGCTGTGCCTGCCCTGATGCCTTCAGAAAACAGAGCCTGTGTGACAGCCGCTTATGGCCCTCAGAGACTCCCAGCAAAACCTTCGTCCCTGTcttgctcctcctcctctcccagCACCAGCCCTAAACTGCAGGATCTCTCACCCACACACTTCTCTCCTCAGTGCCTCTCTCCAGGCTCGAACCCTGGGCTTCAGCCAAGTGCCATCCCTCACGTCTCGGCGATCCAGCCCACGCCTGGCCGCTACCAGCAGTCTGTTCTCTACCCATCAGGCAGTGCGTCCTCTTCTCCTGGCTCCCATCCATCTACCCCGAGTTCAGCACCTGAACTCATCTTCACTCCCAGTCACAGTTTGACCCAGTCTCCGGTCACAGGTGAGGCCACAGAGCTGCCTAAAGTTCCAGTGAGGAGTGGGCCATCTCCTCTTTTACAGGACGAAGGAGCACCTCCCACGCTGGCCATCAGCATCAAACAGGAACCACAAGAACTGGATCAAATGTATCTAGATGATGTCAATGAGATCATAAGGAATGACCTGTCCAGCATCTCCGTTCATACCCACGCATAGCGACAATGGAACGTGAATCACACAGAAGAAATTGACATTTGAACCTTTCATACCAGAACAAAAACATGCCTCCGCTTAGCCTGATTGCAATAACAACATCAGCACTGCAAAGTCGATTGTAAAGCTCACAATTGTAAAGCAGTCAGATCTAAGAGACTGACTGAAAAAGCAGCACAGAAAGTGTATGGAATAACAAAATACTACCAAAACAATGCGTGTGAACTGATGGACCAAGCCCTGTGtatggtgtttattttttttcccctctacaTTTCCTCTTGTGCACTCGTGTAGCTCTTTAAATTATTACCCAAGTGCAATTTGTtttccattattattttaatgtctaaatgtttaatgtatGCATATATGCCAATATGCCTTAAAATCAATGGTCATATTATTGTAATTAGACAGTTGTCTGCTATGGTAATGAATCATGTCTGAACAGCCATTCCTTTGCTTACATTGGAATTTTGTCCAGCTGTAATGAAACATAACTGGAACTGcattttttatacattgcaAGAGAATCATATTTATTGTCTCTACCTGAGCTGGAATGAATTGTACACAGGAAAATAAGTAGCGTGTGTTGTGGTagttaaaattataaatgaaatgagCAGTACaaccttacatttaaaaaatttctaaaccaaagtgttttattcaggtTAGGCCGTGATCTGTTTCTGAACTGCCTCTGCACTACCTGTATATTCTCTGTGCCTCTGTGAGCATTTTGTGCCTTATATGCATTGATATGACCACAGATTTCCTTTTCTGCTTAGTTGCATGTCGtcatttttttgctgaaaaattTTATAACCGTTTTATCTAGCTGATGACaggaaaattgttttttttgccacaactacttttgtttgttttctgaaacTCAATATTGTGATAGTATCGATGCCATTGTTTTGTAGGTTATTAGCTAATGTATGCACTTTACTTTGTACTTCTCCTTAATGatattttgaggaaaaattacaacatatgatttgttttctattttttttttcctgatgaaCAGTGAATTTATGAAAGCAACACTCCAAGATACTGTTTTTCTTGCCAGCATCTTGTATCCCAATTAACAATTATTAGTACATTTTTTGCATTAGCAATAGCAAAATATGcacaataaatgcatttaacaaAGA
>XM_026930036.2
GCGTGAGCTAGTGCGTCACGAAGACCCCGAGCAGCCCGGCACTTCATTTACAACTCCTGAATTAAAACGACGCAACGGgatttctaacacacacacacacacatacacacacacacaaaacctagtTACTAAGGCACATATCTACAGTTTGGATTTTGAATAAGCGCCTTTATAAATTATGCGCACTTTTCCGTGACAGCGTTTTGCATGCCACAGTTTGACAGAACTGACCATTTTTCTGTGAAGTTTTTGGAGTTGTACATAACTTGGACGGTTAACTTTCACCAAAGAGGTCGGAAGCATGAAATCAGCAGATGAAGATGCATACAGCTACACACCGAACATCAGCCTATCCCTTCCACTGAGTAGCCCTTGCCTTCCCACCCAGTACCACAACCTTCAGACCAgtccctccatctctgtctctataAGCCAACCTTCATCATTCTCCCCCAGTGAAGACATGGGCTCGATGGGATACTACCAATCATCTGGCCCCAATGGAGCCCCTGCTCTGGAAAGCCCACGCATCGAGATCACAGCTTATGGTCAGTTCCCTGAAGATGAGGTGGAAGAGAACAATGCACCTGTAGCTAAGCGCGTCAACTCTGTAGTGACTTTAACATTGCCTAGTGGTGAAGGTTACCGTGACCCTAGCTGCCTCAGCCCAGCTAGCAGCGTTTCGTCACGTAGCTGCCACTCGGAGGCTTCATCATATGAGTCAGGCTATTCGTGCAATTATGACAATTCATCACAGAACTCCCCATGGCAGTCACCATGTGTCTCACCCAAAGGTTCCTCTTCATTGCTGTCTGGAACCCTGGGCACCTCACCTCGCCAATCACCTACAGGATCTCCCCGCACCAGTGTGACTGATGAAAGCTGGACAGCACCTCGTGGCTCCCGCTCCAACTCCCCTTGTGGTGGGAAACGGAAATACAGCTTTAACAGCAACGCCTCTCACAAATATCATCCATATTCACCTAACCAGTCACCAGGGCTGTCTCCACAAACCTCACCTCGCCTCAGCATGACTGAAGACGCATGGCTGCCCAACACCAACCAGTACACCAATTCTGCCATTGTGGCAGCCATTAATGCCCTCAGCACTGATGGAATGACTGATATTGGAGAGGGGATTCCACTCAAGACCAGGAAAACCAGCATGGAGCATAACACTTCTGTGAGCCTCAAGATTGAGCCTGGAGGTGAGGAGACAGGCTCTGCAGAGCTCTGTCATGAGGACTACTCCACGTCACGCCTGGCATTTAAGAAGGAGGGCTACACCAGCTTTCTGGATGTACCACATCATCCATATTGGTCTAAACCAAAGCCTTACATCAGCCCATCCTTGCCAGCACTTGACTGGCAGCTGCCCTCCAGTTCTGGGCCATACAGCCTGCAGATCGAGGTTCAGCCCAAATCTCACCATCGTGCTCACTATGAAACAGAAGGAAGCAGAGGGGCCGTGAAGGCACTTGCCGGAGGACATCCAGTTGTTCAGCTTCACGGCTACATGGAGAGCGAGCCTCTGACTCTACAGCTGTTCATCGGGACGGCAGACGACCGTCTCCTGCGGCCACACGCTTTTTACCAGGTCCACCGCATCACAGGCAAGACCGTGTCCACACCCAGCCACGAGATCATGCAGGCCAACACCAAAGTGCTGGAGATTCCACTCCTGCCCGAGAGCAACATGAGGGCCATaattgaCTGTGCTGGGATTCTGAAGCTGCGAAACTCAGACATCGAGCTGCGGAAAGGCGAGACGGATATCGGGAGGAAGAACACACGAGTCAGGATGGTGTTCCGCGTCCATATTAACCAGCCCAATGGCAGGACCGTGTCCCTGCAGGTTGCATCCAACCCCATCGAATGCTcCCAGCGTTCTGCACAGGAGCTGCCTCTGGTGGACAGACAGAGTTTGGACAGCTGTCCTGCAACAGGGGGAGAGCGTATGCTTATCAGTGGTCATAACTTCCAACCTGACTCCAAGGTGGTGTTTGTGGAGAAAGGACAAGATGGTCATCACATATGGGAGATGGAAGCCAAAGTTGAAAAGGACACCTTTAAAACTACAGCTTTGCTTGTGGAGATTCCAACTTACCGAAACCAAAGAATATCCAGCCCTGTTTTGGTGAACTTCTACATATGCAATGGCAAACGGAAGAGGAGCCAATACCAACGATTCACCTACCTACCATTTCCCACCATAAAGACAGAGCCACATGATGACTATGAGCTCCCTCGCCTGTGTGCACAGCAGCACTCCCCTAGCCTTGCCAAGCCGTATTACGGTCTGCAAGCTGTGCCTGCCCTGATGCCTTCAGAAAACAGAGCCTGTGTGACAGCCGCTTATGGCCCTCAGAGACTCCCAGCAAAACCTTCGTCCCTGTcttgctcctcctcctctcccagCACCAGCCCTAAACTGCAGGATCTCTCACCCACACACTTCTCTCCTCAGTGCCTCTCTCCAGGCTCGAACCCTGGGCTTCAGCCAAGTGCCATCCCTCACGTCTCGGCGATCCAGCCCACGCCTGGCCGCTACCAGCAGTCTGTTCTCTACCCATCAGGCAGTGCGTCCTCTTCTCCTGGCTCCCATCCATCTACCCCGAGTTCAGCACCTGAACTCATCTTCACTCCCAGTCACAGTTTGACCCAGTCTCCGGTCACAGGTGAGGCCACAGAGCTGCCTAAAGTTCCAGTGAGGAGTGGGCCATCTCCTCTTTTACAGGACGAAGGAGCACCTCCCACGCTGGCCATCAGCATCAAACAGGAACCACAAGAACTGGATCAAATGTATCTAGATGATGTCAATGAGATCATAAGGAATGACCTGTCCAGCATCTCCGTTCATACCCACGCATAGCGACAATGGAACGTGAATCACACAGAAGAAATTGACATTTGAACCTTTCATACCAGAACAAAAACATGCCTCCGCTTAGCCTGATTGCAATAACAACATCAGCACTGCAAAGTCGATTGTAAAGCTCACAATTGTAAAGCAGTCAGATCTAAGAGACTGACTGAAAAAGCAGCACAGAAAGTGTATGGAATAACAAAATACTACCAAAACAATGCGTGTGAACTGATGGACCAAGCCCTGTGtatggtgtttattttttttcccctctacaTTTCCTCTTGTGCACTCGTGTAGCTCTTTAAATTATTACCCAAGTGCAATTTGTtttccattattattttaatgtctaaatgtttaatgtatGCATATATGCCAATATGCCTTAAAATCAATGGTCATATTATTGTAATTAGACAGTTGTCTGCTATGGTAATGAATCATGTCTGAACAGCCATTCCTTTGCTTACATTGGAATTTTGTCCAGCTGTAATGAAACATAACTGGAACTGcattttttatacattgcaAGAGAATCATATTTATTGTCTCTACCTGAGCTGGAATGAATTGTACACAGGAAAATAAGTAGCGTGTGTTGTGGTagttaaaattataaatgaaatgagCAGTACaaccttacatttaaaaaatttctaaaccaaagtgttttattcaggtTAGGCCGTGATCTGTTTCTGAACTGCCTCTGCACTACCTGTATATTCTCTGTGCCTCTGTGAGCATTTTGTGCCTTATATGCATTGATATGACCACAGATTTCCTTTTCTGCTTAGTTGCATGTCGtcatttttttgctgaaaaattTTATAACCGTTTTATCTAGCTGATGACaggaaaattgttttttttgccacaactacttttgtttgttttctgaaacTCAATATTGTGATAGTATCGATGCCATTGTTTTGTAGGTTATTAGCTAATGTATGCACTTTACTTTGTACTTCTCCTTAATGatattttgaggaaaaattacaacatatgatttgttttctattttttttttcctgatgaaCAGTGAATTTATGAAAGCAACACTCCAAGATACTGTTTTTCTTGCCAGCATCTTGTATCCCAATTAACAATTATTAGTACATTTTTTGCATTAGCAATAGCAAAATATGcacaataaatgcatttaacaaAGA

Function

symbol description
nfatc1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within with a negative effect on lymphangiogenesis. Acts upstream of or within response to mechanical stimulus. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Is expressed in several structures, including adaxial cell; heart; olfactory system; scale; and tail bud. Orthologous to human NFATC1 (nuclear factor of activated T cells 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009612 response to mechanical stimulus biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04446 NFATC1, NFAT2, NFATC; nuclear factor of activated T-cells, cytoplasmic 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930035.2 True 4053 mRNA 0.47 10 7592626 7636971
XM_026930036.2 False 4047 mRNA 0.47 10 7592626 7636971

Neighbor

gene id symbol gene type direction distance location
atp9b atp9b,LOC107656641,LOC107563702,LOC107697002 coding upstream 12205 7534040 ~ 7580421 (+)
sall3b LOC108256805,LOC107090828 coding upstream 61125 7522930 ~ 7531501 (+)
galr1a galr1a,galr1,LOC108256854,LOC107697195,LOC107592101,LOC103037936,LOC108429058 coding upstream 114964 7474707 ~ 7477662 (+)
tshz1 tshz1,LOC108257250,LOC108429095,LOC107748691,LOC107592027,LOC107696938,LOC107739558,LOC107688322 coding upstream 314486 7236100 ~ 7278140 (+)
cndp2 cndp2,LOC107748690,LOC107696911,LOC107739559,LOC107688323 coding upstream 583715 6995313 ~ 7008911 (+)
fbxl6 fbxl6 coding downstream 18734 7655705 ~ 7664305 (+)
trhrb LOC108256856,LOC108441692 coding downstream 233906 7870877 ~ 7877775 (+)
pkhd1l1.1 pkhd1l1 coding downstream 284461 7921432 ~ 7971682 (+)
gdf6b gdf6 coding downstream 336585 7973556 ~ 7976616 (+)
LOC113536206 LOC108256941,LOC108410903,LOC107717718 coding downstream 383830 8020801 ~ 8028040 (+)
G339721 NA non-coding upstream 124980 7449750 ~ 7467646 (+)
G339700 NA non-coding upstream 193556 7395074 ~ 7399070 (+)
G339661 NA non-coding upstream 342211 7247820 ~ 7250415 (+)
G339659 NA non-coding upstream 359519 7232884 ~ 7233107 (+)
G339618 LOC108429093 non-coding upstream 633342 6953062 ~ 6959284 (+)
G339804 LOC108256927,LOC108262328,LOC108441690 non-coding downstream 36009 7672980 ~ 7674655 (+)
LOC113535942 NA non-coding downstream 127782 7764753 ~ 7772456 (+)
G339830 NA non-coding downstream 176661 7813632 ~ 7813864 (+)
G339965 NA non-coding downstream 251733 7888704 ~ 7889014 (+)
G340047 NA non-coding downstream 361112 7998083 ~ 7998288 (+)
G339324 NA other upstream 875480 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 976603 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 1248717 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 2812240 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 2830024 4757814 ~ 4762602 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 603726 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 645989 8282960 ~ 8285204 (+)
sem1 NA other downstream 1275957 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 1482043 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 1587633 9224604 ~ 9229638 (+)

Expression


Co-expression Network