clptm1l (clptm1l,LOC107655116,LOC107694764)


Basic Information

Item Value
gene id clptm1l
gene name clptm1l,LOC107655116,LOC107694764
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6653221 ~ 6662882 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930045.2
TCTGGCAACACGGAAAAATATTTCAACACGGAAGTTAAAATACGGTTCTGCTTGTAAACCCGGACCAAGAAACGCTTAAAAATTCTCCTGAAGCTTTGTGTTTCTTCTGCATCCCGTTGCTTTCTGCGCGTTATTTTGGTGGGGAAGATACTCCAGAGGAGTGTGAGGAGGATTTGTTAGCATGATATTTGGTTTTTAGCCGGTGATGTCGGAGAGCTGCTTGAAGGATCAGGACTTAAACCCTACGTGTCACAAGCTGCGCGTGCAGCGACACTGGCATGTCGGGTAACACGGGTCGGGTGTTTCACATCATGTGTGTGTAGATCTACAGATCAGTATTGTTAATCCAGTCAGATATTGACATAGCCGAGTAAAAGAGGCAGCATGTTTCAGAAGACCTCTCTGACCACCATCATAGTGGGGGTCTTCATCGTCTACGTGCTGCACACGTGCTGGGTGATGTACGGCATCGTGTACACAAAACCCTGTGAAAAGCCCAGAAGTGACAACTGCATCAGTCCTTATCTTGCAGGAAAACCTCGCCTGCAGATGAGCATCTACACAGCTCTGCGCCCCAACGCTGAAGGaggacacacactcatccacaggGAGGAGGATTTTGATGTGCACACCAGATTTGAGAGGTTAATAAATGTGTCCCTGCCGAAGAAGACACGGAAGAATGGAACGCTATACGGCATGGTGTTTGTCCATCAAGCGGGAATGTCTCCGTGGCAGGACCCACGCCAAGTGCATCTGGTCACGCAGCTCACCACGTACATGCTGCCCAAACCCCCGGAGGTCAGCCTGATCACCGGCCAGGAGCTGCCCCGGAAGCAGGAGCCGAGAACCCCGGGGGGTGATGGAGAGGTGGACCGGCCCGTGTCTCATTGGCGCTCCCGTCTCACACTGAACGTCGTGGCCGAGAACTTCCTGTTCGACCGAGAGGCCATACCGAGTGACGTGCATCGCTATATGAGAGTGTATCAGAGTGGAAAGAAGTTTGTGTACCTCCCTCTGCTGTTTATAGATGAGCTGAGTAACCGAGTGAAAGATTTAGTGGAGATCAACAGCAGCACCACTGAGCTGCCTCTCACTATTTCATACGACACCATCACGCTGGGAAAGCTGCGCTTCTGGATCCACATGCAGGATGCCGTGTACTCGCTGCAGCAGTTTGGCTTTACTGAAAAGGATGCAGATGAAATCAAGGGCATATTTGTGGACACCAATCTCTACTTCCTCGCCCTGACCTTCTTTGTCGCTGCCTTTCATCTCTTATTTGACTTCCTGGCGTTTAAAAATGATATCAGCTTTTGGAAGCAGAAGAAGAGCATGGTGGGAATGTCCAGCAAAGCAGTGCTGTGGAGGTGTTTCAGCACTCTAGTGATTTTCCTCTACCTGCTCGATGAACAGACGAGCCTGCTGGTGCTCATCCCTGCTGGAATAGGATCTCTGATCGAGGTGTGGAAAGTGAAGAAAGCTTTCAAAATCTTCATTTTCTGGAAGGGGCTTACTCCAACTTTCATGTTTGGCAAATCTGATGAATCCGAGAGAAGAACGGAGGAATATGACAGTTTGGCGATGAAATATCTGTCCTACCTGCTGTATCcactgtgtgtgggtggagcCATTTATGCACTTGTATTTGTGAAGTATAAAAGTTGGTACTCCTGGCTGATCAACAGTTTAGTCAATGGAGTATATGCTTTTGGATTCCTCTTCATGCTACCTCAGCTCTTTGTGAACTACAAGttaaaatcGGTGGCTCATCTGCCCTGGAAGGCCTTTATGTACAAGGCGTTCAACACGTTTATTGACGATGTCTTCGCCTTCATAATCACCATGCCAACATCTCATCGGCTGGCCTGCTTCCGGGACGACGCTGTGTTTATCATTTACCTGTATCAGAGATGGCTGTATCCCGTGGACAAGACCAGGGTGAACGAGTACGGCGTGTCTTATGATGAAGAACCAAAACGAAAATCACACAAAGAGTAAAGTGACCACGGCATCTAATCATCCTGCAGGAGACATCCACACGGACACTGAGACAGTGACGAGGACGTGGGCACACGGTTCAGTTAACACAATGGCTGATTGGATCTGCTGTCCCCTTTCGAGTTGGACTTCTGTCTCTTACCTGTGCTTGGTGTTTGTGTCCTGTTCTCCTCATGCTACATGTCGTAATCCTCACGTGAACATGAATATTCAGCTGGGGGAGTGATTACTAAATGAGCAGAATTGATGTTATTGAGTTAACTGGGTCAGCTTAAGCTGTTTAGCTTAAAATATCCTTGATTTGCTCAGGATAGAGCCGAGTTagctcattaacacacatttcattaaatCAGAGCTTATTATTAATGCGTACTGTATCTGCCTGTTATTCCCTGTTATCCTGTCTGTGACTCAAGTGTCACTAATTCAATTTGACCGTTTCTCTAATTATAATGAGGGAAAATAAGCTCAGCTGAAGGCAGAAGTATGATATCTTTCATtaaatagtgtttaaaaaaaaaagtcatgtttgTGCCAAATGAACAGAAGGTTTGATAGTTAGTTGAAAGTCCTGATGAGAGATTGTGATGTTTCTGTGTATTGGGTGAGAATGATCTGTGTGCGAGTTTGTGTACTATATTCCACTGAAGTGTTTAAAGGGCCTTGATTTGTCATTTATTCATGAAGTCCATGCATTGGCTTATGAGGAGGATATTTCTACTTGCTTAGAATTGCAACAATTAGCACTTtttggcatttatttttttaaatctgaaagcTGATTGAAACATCACAACTGAAATGAATGGTAGTAAATCGATGGGATTTTCTCCCCTAATCACCATCAACTCTAATAATTACATTCCTGATGTTATGGTTATCACAATAACGGTGACGCATGAGAAAACACGCATATGCaatgtatgtttttaatattaattttctaATGTTCTTATGCTTCTTcagcaaaataaatcaaatcctCCAGCAAA
>XM_026930046.2
ATCTGGCAACACGGAAAAATATTTCAACACGGAAGTTAAAATACGGTTCTGCTTGTAAACCCGGACCAAGAAACGCTTAAAAATTCTCCTGAAGCTTTGTGTTTCTTCTGCATCCCGTTGCTTTCTGCGCGTTATTTTGGTGGGGAAGATACTCCAGAGGAGTGTGAGGAGGATTTGTTAGCATGATATTTGGTTTTTAGCCGGTGATGTCGGAGAGCTGCTTGAAGGATCAGGACTTAAACCCTACGTGTCACAAGCTGCGCGTGCAGCGACACTGGCATGTCGGGTAACACGGGTCGGGTGTTTCACATCATGTGTGTGTAGATCTACAGATCAGTATTGTTAATCCAGTCAGATATTGACATAGCCGAGTAAAAGAGGCAGCATGTTTCAGAAGACCTCTCTGACCACCATCATAGTGGGGGTCTTCATCGTCTACGTGCTGCACACGTGCTGGGTGATGTACGGCATCGTGTACACAAAACCCTGTGAAAAGCCCAGAAGTGACAACTGCATCAGTCCTTATCTTGCAGGAAAACCTCGCCTGCAGATGAGCATCTACACAGCTCTGCGCCCCAACGCTGAAGGaggacacacactcatccacaggGAGGAGGATTTTGATGTGCACACCAGATTTGAGAGGTTAATAAATGTGTCCCTGCCGAAGAAGACACGGAAGAATGGAACGCTATACGGCATGGTGTTTGTCCATCAAGCGGGAATGTCTCCGTGGCAGGACCCACGCCAAGTGCATCTGGTCACGCAGCTCACCACGTACATGCTGCCCAAACCCCCGGAGGTCAGCCTGATCACCGGCCAGGAGCTGCCCCGGCAGGAGCCGAGAACCCCGGGGGGTGATGGAGAGGTGGACCGGCCCGTGTCTCATTGGCGCTCCCGTCTCACACTGAACGTCGTGGCCGAGAACTTCCTGTTCGACCGAGAGGCCATACCGAGTGACGTGCATCGCTATATGAGAGTGTATCAGAGTGGAAAGAAGTTTGTGTACCTCCCTCTGCTGTTTATAGATGAGCTGAGTAACCGAGTGAAAGATTTAGTGGAGATCAACAGCAGCACCACTGAGCTGCCTCTCACTATTTCATACGACACCATCACGCTGGGAAAGCTGCGCTTCTGGATCCACATGCAGGATGCCGTGTACTCGCTGCAGCAGTTTGGCTTTACTGAAAAGGATGCAGATGAAATCAAGGGCATATTTGTGGACACCAATCTCTACTTCCTCGCCCTGACCTTCTTTGTCGCTGCCTTTCATCTCTTATTTGACTTCCTGGCGTTTAAAAATGATATCAGCTTTTGGAAGCAGAAGAAGAGCATGGTGGGAATGTCCAGCAAAGCAGTGCTGTGGAGGTGTTTCAGCACTCTAGTGATTTTCCTCTACCTGCTCGATGAACAGACGAGCCTGCTGGTGCTCATCCCTGCTGGAATAGGATCTCTGATCGAGGTGTGGAAAGTGAAGAAAGCTTTCAAAATCTTCATTTTCTGGAAGGGGCTTACTCCAACTTTCATGTTTGGCAAATCTGATGAATCCGAGAGAAGAACGGAGGAATATGACAGTTTGGCGATGAAATATCTGTCCTACCTGCTGTATCcactgtgtgtgggtggagcCATTTATGCACTTGTATTTGTGAAGTATAAAAGTTGGTACTCCTGGCTGATCAACAGTTTAGTCAATGGAGTATATGCTTTTGGATTCCTCTTCATGCTACCTCAGCTCTTTGTGAACTACAAGttaaaatcGGTGGCTCATCTGCCCTGGAAGGCCTTTATGTACAAGGCGTTCAACACGTTTATTGACGATGTCTTCGCCTTCATAATCACCATGCCAACATCTCATCGGCTGGCCTGCTTCCGGGACGACGCTGTGTTTATCATTTACCTGTATCAGAGATGGCTGTATCCCGTGGACAAGACCAGGGTGAACGAGTACGGCGTGTCTTATGATGAAGAACCAAAACGAAAATCACACAAAGAGTAAAGTGACCACGGCATCTAATCATCCTGCAGGAGACATCCACACGGACACTGAGACAGTGACGAGGACGTGGGCACACGGTTCAGTTAACACAATGGCTGATTGGATCTGCTGTCCCCTTTCGAGTTGGACTTCTGTCTCTTACCTGTGCTTGGTGTTTGTGTCCTGTTCTCCTCATGCTACATGTCGTAATCCTCACGTGAACATGAATATTCAGCTGGGGGAGTGATTACTAAATGAGCAGAATTGATGTTATTGAGTTAACTGGGTCAGCTTAAGCTGTTTAGCTTAAAATATCCTTGATTTGCTCAGGATAGAGCCGAGTTagctcattaacacacatttcattaaatCAGAGCTTATTATTAATGCGTACTGTATCTGCCTGTTATTCCCTGTTATCCTGTCTGTGACTCAAGTGTCACTAATTCAATTTGACCGTTTCTCTAATTATAATGAGGGAAAATAAGCTCAGCTGAAGGCAGAAGTATGATATCTTTCATtaaatagtgtttaaaaaaaaaagtcatgtttgTGCCAAATGAACAGAAGGTTTGATAGTTAGTTGAAAGTCCTGATGAGAGATTGTGATGTTTCTGTGTATTGGGTGAGAATGATCTGTGTGCGAGTTTGTGTACTATATTCCACTGAAGTGTTTAAAGGGCCTTGATTTGTCATTTATTCATGAAGTCCATGCATTGGCTTATGAGGAGGATATTTCTACTTGCTTAGAATTGCAACAATTAGCACTTtttggcatttatttttttaaatctgaaagcTGATTGAAACATCACAACTGAAATGAATGGTAGTAAATCGATGGGATTTTCTCCCCTAATCACCATCAACTCTAATAATTACATTCCTGATGTTATGGTTATCACAATAACGGTGACGCATGAGAAAACACGCATATGCaatgtatgtttttaatattaattttctaATGTTCTTATGCTTCTTcagcaaaataaatcaaatcctCCAGCAAA
>XM_026930047.2
ATCTGGCAACACGGAAAAATATTTCAACACGGAAGTTAAAATACGGTTCTGCTTGTAAACCCGGACCAAGAAACGCTTAAAAATTCTCCTGAAGCTTTGTGTTTCTTCTGCATCCCGTTGCTTTCTGCGCGTTATTTTGGTGGGGAAGATACTCCAGAGGAGTGTGAGGAGGATTTGTTAGCATGATATTTGGTTTTTAGCCGGTGATGTCGGAGAGCTGCTTGAAGGATCAGGACTTAAACCCTACGTGTCACAAGCTGCGCGTGCAGCGACACTGGCATGTCGGGTAACACGGGTCGGGTGTTTCACATCATGTGTGTGTAGATCTACAGATCAGTATTGTTAATCCAGTCAGATATTGACATAGCCGAGTAAAAGAGGCAGCATGTTTCAGAAGACCTCTCTGACCACCATCATAGTGGGGGTCTTCATCGTCTACGTGCTGCACACGTGCTGGGTGATGTACGGCATCGTGTACACAAAACCCTGTGAAAAGCCCAGAAGTGACAACTGCATCAGTCCTTATCTTGCAGGAAAACCTCGCCTGCAGATGAGCATCTACACAGCTCTGCGCCCCAACGCTGAAGGaggacacacactcatccacaggGAGGAGGATTTTGATGTGCACACCAGATTTGAGAGGTTAATAAATGTGTCCCTGCCGAAGAAGACACGGAAGAATGGAACGCTATACGGCATGGTGTTTGTCCATCAAGCGGGAATGTCTCCGTGGCAGGACCCACGCCAAGTGCATCTGGTCACGCAGCTCACCACGTACATGCTGCCCAAACCCCCGGAGGTCAGCCTGATCACCGGCCAGGAGCTGCCCCGGGAGCCGAGAACCCCGGGGGGTGATGGAGAGGTGGACCGGCCCGTGTCTCATTGGCGCTCCCGTCTCACACTGAACGTCGTGGCCGAGAACTTCCTGTTCGACCGAGAGGCCATACCGAGTGACGTGCATCGCTATATGAGAGTGTATCAGAGTGGAAAGAAGTTTGTGTACCTCCCTCTGCTGTTTATAGATGAGCTGAGTAACCGAGTGAAAGATTTAGTGGAGATCAACAGCAGCACCACTGAGCTGCCTCTCACTATTTCATACGACACCATCACGCTGGGAAAGCTGCGCTTCTGGATCCACATGCAGGATGCCGTGTACTCGCTGCAGCAGTTTGGCTTTACTGAAAAGGATGCAGATGAAATCAAGGGCATATTTGTGGACACCAATCTCTACTTCCTCGCCCTGACCTTCTTTGTCGCTGCCTTTCATCTCTTATTTGACTTCCTGGCGTTTAAAAATGATATCAGCTTTTGGAAGCAGAAGAAGAGCATGGTGGGAATGTCCAGCAAAGCAGTGCTGTGGAGGTGTTTCAGCACTCTAGTGATTTTCCTCTACCTGCTCGATGAACAGACGAGCCTGCTGGTGCTCATCCCTGCTGGAATAGGATCTCTGATCGAGGTGTGGAAAGTGAAGAAAGCTTTCAAAATCTTCATTTTCTGGAAGGGGCTTACTCCAACTTTCATGTTTGGCAAATCTGATGAATCCGAGAGAAGAACGGAGGAATATGACAGTTTGGCGATGAAATATCTGTCCTACCTGCTGTATCcactgtgtgtgggtggagcCATTTATGCACTTGTATTTGTGAAGTATAAAAGTTGGTACTCCTGGCTGATCAACAGTTTAGTCAATGGAGTATATGCTTTTGGATTCCTCTTCATGCTACCTCAGCTCTTTGTGAACTACAAGttaaaatcGGTGGCTCATCTGCCCTGGAAGGCCTTTATGTACAAGGCGTTCAACACGTTTATTGACGATGTCTTCGCCTTCATAATCACCATGCCAACATCTCATCGGCTGGCCTGCTTCCGGGACGACGCTGTGTTTATCATTTACCTGTATCAGAGATGGCTGTATCCCGTGGACAAGACCAGGGTGAACGAGTACGGCGTGTCTTATGATGAAGAACCAAAACGAAAATCACACAAAGAGTAAAGTGACCACGGCATCTAATCATCCTGCAGGAGACATCCACACGGACACTGAGACAGTGACGAGGACGTGGGCACACGGTTCAGTTAACACAATGGCTGATTGGATCTGCTGTCCCCTTTCGAGTTGGACTTCTGTCTCTTACCTGTGCTTGGTGTTTGTGTCCTGTTCTCCTCATGCTACATGTCGTAATCCTCACGTGAACATGAATATTCAGCTGGGGGAGTGATTACTAAATGAGCAGAATTGATGTTATTGAGTTAACTGGGTCAGCTTAAGCTGTTTAGCTTAAAATATCCTTGATTTGCTCAGGATAGAGCCGAGTTagctcattaacacacatttcattaaatCAGAGCTTATTATTAATGCGTACTGTATCTGCCTGTTATTCCCTGTTATCCTGTCTGTGACTCAAGTGTCACTAATTCAATTTGACCGTTTCTCTAATTATAATGAGGGAAAATAAGCTCAGCTGAAGGCAGAAGTATGATATCTTTCATtaaatagtgtttaaaaaaaaaagtcatgtttgTGCCAAATGAACAGAAGGTTTGATAGTTAGTTGAAAGTCCTGATGAGAGATTGTGATGTTTCTGTGTATTGGGTGAGAATGATCTGTGTGCGAGTTTGTGTACTATATTCCACTGAAGTGTTTAAAGGGCCTTGATTTGTCATTTATTCATGAAGTCCATGCATTGGCTTATGAGGAGGATATTTCTACTTGCTTAGAATTGCAACAATTAGCACTTtttggcatttatttttttaaatctgaaagcTGATTGAAACATCACAACTGAAATGAATGGTAGTAAATCGATGGGATTTTCTCCCCTAATCACCATCAACTCTAATAATTACATTCCTGATGTTATGGTTATCACAATAACGGTGACGCATGAGAAAACACGCATATGCaatgtatgtttttaatattaattttctaATGTTCTTATGCTTCTTcagcaaaataaatcaaatcctCCAGCAAA

Function

symbol description
clptm1l Predicted to act upstream of or within apoptotic process. Predicted to be integral component of membrane. Predicted to be active in endomembrane system and membrane. Orthologous to human CLPTM1L (CLPTM1 like).

NR:

description
cleft lip and palate transmembrane protein 1-like protein

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930045.2 True 2993 mRNA 0.45 17 6653222 6662882
XM_026930046.2 False 2991 mRNA 0.45 17 6653221 6662882
XM_026930047.2 False 2988 mRNA 0.45 17 6653221 6662882

Neighbor

gene id symbol gene type direction distance location
znrf2a znrf2,LOC105939633,LOC106531196 coding upstream 19028 6621216 ~ 6634193 (+)
LOC113536295 ankrd28,LOC108256911,LOC108441435,LOC107745379,LOC107596646 coding upstream 81963 6528408 ~ 6571258 (+)
snx13 snx13 coding upstream 129095 6477323 ~ 6524126 (+)
twist1a twist1,twist1a,LOC108257132,LOC107755947,LOC107709721,LOC107667574 coding upstream 267541 6384201 ~ 6385680 (+)
LOC113536247 ferd3l,LOC102791589 coding upstream 271884 6380160 ~ 6381337 (+)
rplp1 rplp1 coding downstream 1211 6664093 ~ 6666353 (+)
LOC113536346 tuba4l,LOC108256914,LOC108437766,LOC107669576,LOC107564211 coding downstream 110437 6773319 ~ 6775535 (+)
cndp2 cndp2,LOC107748690,LOC107696911,LOC107739559,LOC107688323 coding downstream 332431 6995313 ~ 7008911 (+)
tshz1 tshz1,LOC108257250,LOC108429095,LOC107748691,LOC107592027,LOC107696938,LOC107739558,LOC107688322 coding downstream 573218 7236100 ~ 7278140 (+)
galr1a galr1a,galr1,LOC108256854,LOC107697195,LOC107592101,LOC103037936,LOC108429058 coding downstream 811825 7474707 ~ 7477662 (+)
G339300 snrpd1 non-coding upstream 1395 6648179 ~ 6651826 (+)
G339290 NA non-coding upstream 7266 6578803 ~ 6645955 (+)
G339279 NA non-coding upstream 126127 6526395 ~ 6527094 (+)
G339275 NA non-coding upstream 126904 6474482 ~ 6526317 (+)
LOC117595844 NA non-coding upstream 155478 6494601 ~ 6497743 (+)
G339616 NA non-coding downstream 287690 6950572 ~ 6951822 (+)
G339618 LOC108429093 non-coding downstream 290180 6953062 ~ 6959284 (+)
G339659 NA non-coding downstream 570002 7232884 ~ 7233107 (+)
G339661 NA non-coding downstream 584938 7247820 ~ 7250415 (+)
G339700 NA non-coding downstream 732192 7395074 ~ 7399070 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 37198 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 309312 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1872835 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 1890619 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 1900552 4698257 ~ 4752669 (+)
G339324 NA other downstream 48133 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 1577815 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 1620078 8282960 ~ 8285204 (+)
sem1 NA other downstream 2250046 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 2456132 9119014 ~ 9134179 (+)

Expression


Co-expression Network