LOC113536229 (LOC108256952)


Basic Information

Item Value
gene id LOC113536229
gene name LOC108256952
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 12793195 ~ 12797790 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930069.2
CATTGTGGTTTGTAAggctgtgtctgtcagtgtatGTCTCATATGGTGTGTGTAAGCAAACCGGAGAAAGATGTCTGGAACACGGTCCCTCTGCTGCCATGTCAACACGGCCACCCGAGCCTCTGCCATCTTATACTTGgtgtttaatCTGCTGGTGGCTGTGGATTTGACCATTGGAATAATCCGAGAGAAAGATCCGATCACTGTCTCCTATACTGAAATGAAACGTACCCATAGCAATTGCATCTTTGAAATTAGCACCAACTTCATTACACTGCTTCTGATGTCATTCTCCAGTGTGCTGGTTATGTTGTCTCACCGTAAGGGGTCAATGTGTGTGATGCCGTTTATACTGTTCATGTTTCTTGATGTGGCTCTGAGTCTTCTCTCCCTGTTTGATGCTCGGTTTGGACTTCCTGGCACTCCCACGTATGGAGACGCTCTACGGCTGGCTTCAAACCTAAAAGGCGGGGTCAGGTTGGAGGGAGAGGAGCTGAGCCATGTCACCTTGATATTTGGAGTCCTCTTCGTGATGTACATACTGCTGAAGGTGTATATGCTCCAGGTGTCCATTCGCTGTTACTATGTACTGAAGGGAGATCGTATCCCAGCAGCTGAGAACTCTGTGATGGTGAAACTGCCCTCCTACGATGAGGCTCTGAAGATGAAACCTGAGGCCACACTCCCTAACTATCAGGAGCCATAAGGCATAAAGCAAGCACACAGACTTGTTTCATGCACTTCATTCTGTGCACACCTGCAGATGCACACGTGTATACTAGCAACATACATGATGGCACATATCTCGATAcacaaataaaagacaaaaatttcCAGTGTTCACACTCATAGCTACAAAGCTTAATATGCACAAGCCAGCTTTCACTGATTTTATGATATATGCTTTAAACCAGTATTATTTCCATTTATACTGCCTTCTCATAAACCGCTATATTTTGAGGATCTGGTAAAGAatcttcctttcattttcctGGTTGAACCTAATCCAAGGTTTTTAAACCAGTAGTGATTTCCACTGACTGTacacagaaatagaaaaacagtAGAAAGTTGTCAAATTATTGAACTACTATTCCAGATTTGGTTCCTTTTAAGCTaaagctatttttttgtttgttttttggaaatgtatttAAGTAAACAGATTTCATGTAGAGATGATGCCTGAAAAGGtataattatacaaaataaacatcataaCCAGTTCAAAATGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930069.2 True 1237 mRNA 0.42 7 12793195 12797790

Neighbor

gene id symbol gene type direction distance location
sdc3 sdc3,LOC107696563,LOC106570634 coding upstream 8768 12751529 ~ 12784427 (+)
pum1 pum1 coding upstream 49377 12727116 ~ 12743818 (+)
nkain1 nkain1,LOC107593567,LOC107670117,LOC107591671,LOC107696573 coding upstream 69651 12714707 ~ 12723544 (+)
snrnp40 snrnp40,LOC107591625,LOC107593559,LOC107696518 coding upstream 83602 12703037 ~ 12709593 (+)
arpp21 arpp21 coding upstream 128126 12650217 ~ 12665069 (+)
matn1 matn1,LOC107696557,LOC107742840,LOC107697056,LOC107706195 coding downstream 622 12798412 ~ 12804158 (+)
sesn2 LOC108257059,LOC108426479,LOC107578469 coding downstream 8356 12806146 ~ 12815232 (+)
yrk fgr,yrk,LOC107706197,LOC107593569,LOC107696553,LOC107697055,LOC107742837,LOC107591631 coding downstream 21314 12819104 ~ 12836295 (+)
ahdc1 ahdc1,LOC107682278 coding downstream 39226 12837016 ~ 12860598 (+)
LOC113536224 LOC108257055 coding downstream 67445 12865235 ~ 12871599 (+)
LOC117595825 NA non-coding upstream 105982 12684133 ~ 12687213 (+)
G342629 NA non-coding upstream 113865 12679115 ~ 12679330 (+)
G342628 NA non-coding upstream 115998 12676848 ~ 12677197 (+)
G342627 NA non-coding upstream 117844 12675141 ~ 12675351 (+)
G342621 NA non-coding upstream 144478 12648495 ~ 12648717 (+)
G342735 NA non-coding downstream 349255 13147045 ~ 13147846 (+)
G342836 NA non-coding downstream 503749 13301539 ~ 13301803 (+)
G343522 NA non-coding downstream 965294 13763084 ~ 13766601 (+)
G343620 NA non-coding downstream 1171444 13969234 ~ 13994319 (+)
G343671 NA non-coding downstream 1278667 14076457 ~ 14078541 (+)
LOC113536228 nobox other upstream 722 12785837 ~ 12792473 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other upstream 97683 12692007 ~ 12695512 (+)
sostdc1b LOC108257373 other upstream 977922 11810109 ~ 11815273 (+)
dlgap3 dlgap3 other upstream 1319872 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 1498839 11292291 ~ 11294356 (+)
si:ch211-199g17.2 NA other downstream 106833 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 279380 13077170 ~ 13081229 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 1407931 14205721 ~ 14231844 (+)
med30 med30,LOC107706236,LOC107754270,LOC107654723 other downstream 1435727 14233517 ~ 14250931 (+)
tnrc18 tnrc18,LOC107581723,LOC107742388 other downstream 2561003 15358793 ~ 15421748 (+)

Expression


Co-expression Network