gdf6b (gdf6)


Basic Information

Item Value
gene id gdf6b
gene name gdf6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 7973556 ~ 7976616 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930071.2
TGTCTGTTGCAGGTTTTGCGCAATGGGACGGAGCCGCTATGCTGctgttactctctctctctctctctctctctctcctcagctgTGCACACGTTCTCCGGTCGCTCTTATAAAAGTTAGCCGTTATTTCAGCTGTAACTAGTCTGCGTGTCCACCATGCACGGCCGCACTTCAGCGGGTGTATTCTCGCCCCTGCTCTTCCTGCTGCAGTCCTGCGCGTGCGTTCACCCGGCGGCCGGGGAGCTGCGCCCCGGTGCCAGTCTTCCCACATCACCGGCCtcgttttcacacacactcgcctcaTCCAGCACCAAGCGCTTCCCCAGAGCAAGCAAAGCCTCCGTAGAGCCTCACGAGTACATGCTTTCCATCTATAAGACTTTCTCGGCTGCTGAGAAACTGGGACTGAACGCGAGCTTCTTCCGCTCGTCTAAAGCCGCAAACACCATCACGAGTTTTGTGGATAACGGACAAGATGATTCTCCAAACTCTCCACTATGGACACAGAAGTATCTCTTTGATATCTCAACACTTTCTGATAAAGTTGAGCTGCTGGGTGCCGAACTAAGAATCTACACAAAAGTCTCTGGACACTTCCCAACATCTGACGCAGGTCCCATGGAGATTCGGCTTCTTTCCTGCCAGACTCACAAACTTCTGGATTCCAAAATCTTAGACTTACAGGATTCTCACAAACCAAGATGGGAAGTCCTAGATGTGTGGGAAATTTTTGCAGAAAGGCATTTGCACACACAAAGGAACTTCTTCTGTCTGGAGCTCAAGGTTTCCCTCGACAAGCCTGAGAGGGAAATCGACTTACGGCATCTTGGATTTCACAGATACGGGCGCACACAACAGAAGAAAGCCATATTGGTGGTGTTCACCAAGTCAAAGAAGAGGCAGAGCTTGTACTATGAGAAAAAAGGGAAGATTAAATTGGATCCCGACCAGGCTGGAAAGGAGAAAGTCCCTCGCATAAAACCTCAGCGGAAGCGACGGACAGCGGTAAATAACCGTCACGGCAAACGACAGGGCAGAAAGTCCAAGTCTAGGTGCAGCAAGAAGCCACTGCATGTCAATTTCAAAGAGCTGGGCTGGGATGACTGGATTATCGCTCCTTTGGATTATGAGGCATACCATTGTGAGGGAATCTGTGACTTTCCACTTAGGTCTCATTTGGAGCCCACTAATCATGCCATCATACAGACTTTGATGAACTCTATGAACCCCAGCAACATGCCACCCAGCTGCTGTGTGCCTTCTAAACTTAGTCCTATCAGCATCTTGTACATTGATGCtgggaataatgtagtgtacaAACAATATGAGGACATGGTGGTGGAGTCATGTGGATGCAGGTGACTCAAAATTACTGTAAGAGTCCAAATACTTACTTATGAGTGTAAGATAAATGAGTGAAGAGTTAAACATTAGAGCTGAGAGAGATTTTGTAGATCAGTCATTAGTAACTACAATTCCATAATGGGATTCACTGATGAAACTGTGAGGTTCAAGCTGAAgccattattatattatattttgtgtcAAATACTAGTCTTTACAACTGACAAAAATGTATGCAGAGAGATCATTTTCAAAGTAATTCCACTTCCTCATACATTTAGTTTCACCCTATAAGATTCATAAGTCATTAAAATGCCTAAAATATAGTATATCCATCATTTTGTAAATAACTTGTACAGTTATTGATTTCATGGTcaatttacactttttcattCTAATTTATACTGCATTCTTTAAATTATTCTAACCAATTATATAGGTAGAACTTTGTATTTAAACCCATACTTTTGTAGATTGAAGGTGTGTATCTACCTCATTGAAGAACTTGGCTTTTTAAATGTTCCTAGATATATGAATGTGAGgaagatttatttcaacattcCTGTAAATACTGTAACCAAATGTGGAAGCTTTATTCT

Function

symbol description
gdf6 Predicted to enable cytokine activity and identical protein binding activity. Involved in positive regulation of chondrocyte differentiation; positive regulation of nitrogen compound metabolic process; and transmembrane receptor protein serine/threonine kinase signaling pathway. Acts upstream of or within with a positive effect on metanephros development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Implicated in several diseases, including Klippel-Feil syndrome 1; Leber congenital amaurosis 17; cleft lip; isolated microphthalmia 4; and multiple synostoses syndrome.

NR:

description
growth/differentiation factor 6

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930071.2 True 1943 mRNA 0.44 2 7973556 7976616

Neighbor

gene id symbol gene type direction distance location
pkhd1l1.1 pkhd1l1 coding upstream 1874 7921432 ~ 7971682 (+)
trhrb LOC108256856,LOC108441692 coding upstream 95781 7870877 ~ 7877775 (+)
fbxl6 fbxl6 coding upstream 309251 7655705 ~ 7664305 (+)
nfatc1 nfatc1,LOC107739553,LOC107656600,LOC107563708 coding upstream 336585 7592626 ~ 7636971 (+)
atp9b atp9b,LOC107656641,LOC107563702,LOC107697002 coding upstream 393135 7534040 ~ 7580421 (+)
LOC113536206 LOC108256941,LOC108410903,LOC107717718 coding downstream 44185 8020801 ~ 8028040 (+)
LOC113535936 LOC108270576,LOC108256939,LOC108270587 coding downstream 66996 8043612 ~ 8047251 (+)
azin1b azin1b,LOC108256938,LOC108425019 coding downstream 75454 8052070 ~ 8061670 (+)
rrm2b rrm2b,LOC108256937,LOC108425040,LOC107702093,LOC107565196,LOC107556385,LOC107724293 coding downstream 86958 8063574 ~ 8069406 (+)
mtdha mtdh coding downstream 94252 8070868 ~ 8080853 (+)
G339965 NA non-coding upstream 84542 7888704 ~ 7889014 (+)
G339830 NA non-coding upstream 159692 7813632 ~ 7813864 (+)
LOC113535942 NA non-coding upstream 201100 7764753 ~ 7772456 (+)
G339804 LOC108256927,LOC108262328,LOC108441690 non-coding upstream 298901 7672980 ~ 7674655 (+)
G339721 NA non-coding upstream 505910 7449750 ~ 7467646 (+)
G340047 NA non-coding downstream 21467 7998083 ~ 7998288 (+)
G340056 rpl30,LOC107710097,LOC107556383 non-coding downstream 120553 8097169 ~ 8100677 (+)
G340146 NA non-coding downstream 257251 8233867 ~ 8237952 (+)
G340197 NA non-coding downstream 422602 8399218 ~ 8411358 (+)
G340248 LOC108256763,LOC108425228,LOC103022454,LOC106515840,LOC107724303,LOC107087831,LOC107584252 non-coding downstream 513063 8489679 ~ 8491914 (+)
G339324 NA other upstream 1256410 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 1357533 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 1629647 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 3193170 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 3210954 4757814 ~ 4762602 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 264081 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 306344 8282960 ~ 8285204 (+)
sem1 NA other downstream 936312 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 1142398 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 1247988 9224604 ~ 9229638 (+)

Expression


Co-expression Network