galr1a (galr1a,galr1,LOC108256854,LOC107697195,LOC107592101,LOC103037936,LOC108429058)


Basic Information

Item Value
gene id galr1a
gene name galr1a,galr1,LOC108256854,LOC107697195,LOC107592101,LOC103037936,LOC108429058
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 7474707 ~ 7477662 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930080.2
acacacacacacacacacgcgcgcgcgacAATGAATTTATGACTGCTTGGGGGGAAAATCATATACATTTGGGTTATATATGATAATGAAACGCTATTCAGAAGTTCTGTAATACGCGTGAATGCACGTGAGCGCACTGCACTGCATCACTGGCGCGCGCTTCGGGGAAATCCTCAGACAAAACATAGACaaatagggttttttttctgtttgcaggAAAATCATGAACATATATAATCAGAGTGGTGGAGGTGTTGTGTCGGAGAGCCGTGCAGACTCGGAGACACCGGCTAAGCTGCTGTTTGGCATTGGTACGGACAACCTGGTGACGCTGCTGGTGTTCGGGCTGATCTTCGCGCTCGGGGTGGTGGGAAATTCGCTGGTGATCGCCGTCCTGGTGCGGCGCAGAGCGAGGCAAAGCCGCGGCACCACTAACATCTTCATCTTTAACCTGGGTGTGGCTGACCTGTCCTACCTGCTGTTCTGCGTGCCCTTCCAGTCCACCGTCTACATGCTTCCCACGTGGGTGCTCGGCGCCTTCATCTGCAAGTTTGTGCACTACTTCTTCACCGTGTCCATGCTGGTGAGCGTCTTCACGCTGTCCGCGATGTCCGTGGACCGCTACGTGGCCATCGTGCACAGCCGGAAGTCCTCGTCTATCCGCGTGGCGCGGCACGCGCGGCTCGGGGTGCTGGGCATCTGGGCGCTCTCGCTGGCTATGGCCGCGCCGGTCGCTTACCACCAGCGCATCGTGGAGACCGAggataacagcacattctgctGGGAAGTGTGGTCTGATCCCAAGAGCAGGAAAGTCTACGTGGTGTGCACATTTGTCTTTGGCTACCTGTTGCCCTTGATCCTTATTTCTTTCTGCTACGCAAAGGTACTGaatcatttacacaaaaatctgCGAAACATATCTAAGAAGTCAGAGGCATCGAAAAAGAAGACAGCACAGACCGttctggtggtggtggtggtctTCTGCCTGTCCTGGCTTCCCCATCATGTGGTGCATCTCTGGGTGGAGTTTGGTTCGTTCCCCCTGAACCAGGCTTCCTTCCTCTTCCGTGTGGTGGCTCACTGTCTGGCCTACAGCAACTCCTCAGTCAACCCCATCATCTACGCATTCCTCTCTGAGAACTTCAGGCAAGCCTACAAGCAGGTGTTTCAATGCCAGGTGGCCAGTGAATGCCCAACACAGGACGCTcgagaaacaagaaacaagatGGAGAAAGTTCCACCCACTAACTGCACCACGGTTTAACTTCCTACACCCATTGACTTGACTTTGTTTTGCTCGTTTAGTGCTGGAGATTGCTTCAGGTACAAGTGGCAGATGTAGTGGACAAGCTGTAGTCTTTTTCTGTCCTGTAATCAAGCACAGTCTCACAATTCAAgctgttttctcattttatttatggtCTCTGATATAACCTAATATGAATTTTGCAGGGAGAAAAATGCTATTCTGTACTATGTTAATAA

Function

symbol description
galr1a Enables galanin receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; negative regulation of adenylate cyclase activity; and positive regulation of cytosolic calcium ion concentration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; gut; intestine; pectoral fin; and pharyngeal arch 3-7. Orthologous to human GALR1 (galanin receptor 1).
galr1 Enables galanin receptor activity and peptide hormone binding activity. Involved in positive regulation of cortisol secretion and positive regulation of transcription by RNA polymerase II. Located in nucleoplasm and plasma membrane.

NR:

description
galanin receptor type 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007194 negative regulation of adenylate cyclase activity biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004966 galanin receptor activity molecular_function

KEGG:

id description
K04230 GALR1; galanin receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930080.2 True 1491 mRNA 0.51 3 7474707 7477662

Neighbor

gene id symbol gene type direction distance location
tshz1 tshz1,LOC108257250,LOC108429095,LOC107748691,LOC107592027,LOC107696938,LOC107739558,LOC107688322 coding upstream 196567 7236100 ~ 7278140 (+)
cndp2 cndp2,LOC107748690,LOC107696911,LOC107739559,LOC107688323 coding upstream 465796 6995313 ~ 7008911 (+)
LOC113536346 tuba4l,LOC108256914,LOC108437766,LOC107669576,LOC107564211 coding upstream 699172 6773319 ~ 6775535 (+)
rplp1 rplp1 coding upstream 808354 6664093 ~ 6666353 (+)
clptm1l clptm1l,LOC107655116,LOC107694764 coding upstream 811825 6653221 ~ 6662882 (+)
sall3b LOC108256805,LOC107090828 coding downstream 45268 7522930 ~ 7531501 (+)
atp9b atp9b,LOC107656641,LOC107563702,LOC107697002 coding downstream 56378 7534040 ~ 7580421 (+)
nfatc1 nfatc1,LOC107739553,LOC107656600,LOC107563708 coding downstream 114964 7592626 ~ 7636971 (+)
fbxl6 fbxl6 coding downstream 178043 7655705 ~ 7664305 (+)
trhrb LOC108256856,LOC108441692 coding downstream 393215 7870877 ~ 7877775 (+)
G339721 NA non-coding upstream 7061 7449750 ~ 7467646 (+)
G339700 NA non-coding upstream 75637 7395074 ~ 7399070 (+)
G339661 NA non-coding upstream 224292 7247820 ~ 7250415 (+)
G339659 NA non-coding upstream 241600 7232884 ~ 7233107 (+)
G339618 LOC108429093 non-coding upstream 515423 6953062 ~ 6959284 (+)
G339804 LOC108256927,LOC108262328,LOC108441690 non-coding downstream 195318 7672980 ~ 7674655 (+)
LOC113535942 NA non-coding downstream 287091 7764753 ~ 7772456 (+)
G339830 NA non-coding downstream 335970 7813632 ~ 7813864 (+)
G339965 NA non-coding downstream 411042 7888704 ~ 7889014 (+)
G340047 NA non-coding downstream 520421 7998083 ~ 7998288 (+)
G339324 NA other upstream 757561 6711015 ~ 6717146 (+)
mturn mturn,LOC107559763,LOC107572558 other upstream 858684 6604605 ~ 6616023 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other upstream 1130798 6333989 ~ 6343909 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 2694321 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 2712105 4757814 ~ 4762602 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 763035 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 805298 8282960 ~ 8285204 (+)
sem1 NA other downstream 1435266 8912928 ~ 8915846 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other downstream 1641352 9119014 ~ 9134179 (+)
bet1 bet1,LOC107669829,LOC107722155 other downstream 1746942 9224604 ~ 9229638 (+)

Expression


Co-expression Network