LOC113536255


Basic Information

Item Value
gene id LOC113536255
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6100546 ~ 6109043 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930094.2
GCCACACCATGCCCTCTCTGCTGCCCTatCTTGGCTTGTTTCTGCTCGCACTGCTTCCCTTGGCCTCGCTCGGACTCTACAGCGGAGACACGGATTTCTACGAAACATCTGGAAGCCAGCTGCAGAATGAGGCGCACGCGCCGGACCACAAGTGGCTTTCCATCGCCAGACAGATGCGGAGAGACATCGCGAGCGTCCGCGACGAGCAGTTGAAAAGGGACTTCGCAGACACAAGCAGCGAGTTCGCCAGTGTGAGGATCCAGACGCCGCTCCTCAGCTCCTCAGACGGGTGTCTGCCCTCCGACTTCACCGCGcataAATGTCTGCGGCGGATCTACAATGGTTTGCGGGTGTACCAAGCTTACCTGCCCTATGTAGAGCGAGAGAACGTGACTGCAGCTCACATGGTGGATATTAAAGTCGGGATCACCAGATTGTTGCATTTAATCAAAGAAACAGTAAAAGTAAATGATGATAAGGTTCACCCAACCTCCTTGAGAGAGTTACCCAATCAGTCAACGTGGACACGGAAGACAGTCATAAACTTCATTCTGCACAACTTCGCAGACTTCATGACTGATACGAGTAGGGCGATTAATTACATGAAGAACATAAAATTAATGAAACACATCGTGAAGGAAGATGAGTGGCTCTCAAAAGATGAGCAGTGAAATGTctgatgttttgtttattttatttatctggtcacatatttatttatttatctgtctatttattGCAGTTATATAAGAAAAAGGGgggtaatatttaaaatttagaaGTTTAATGTTTGATAGTGAAGGGAATTAATACTCAGAGAGTGAAAATTAGTGGAAATCTGTACTTTTGTAAATGATTTGTACTGAAGATAATGGATTGTGGTCTGAGTTAC

Function

GO:

id name namespace
GO:0061448 connective tissue development biological_process
GO:0051216 cartilage development biological_process

KEGG:

id description
ko04512 ECM-receptor interaction
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930094.2 True 892 mRNA 0.45 5 6100546 6109043

Neighbor

gene id symbol gene type direction distance location
slc39a4 slc39a4 coding upstream 156322 5927706 ~ 5944224 (+)
zgc:63863 LOC108256764,LOC108429636,LOC107694745,LOC107566628 coding upstream 374151 5704671 ~ 5726395 (+)
cfap20 cfap20,cp080 coding upstream 426355 5669692 ~ 5674191 (+)
oxsm oxsm,LOC107655122,LOC107694752,LOC107557465,LOC107566624 coding upstream 431530 5665172 ~ 5669016 (+)
LOC113535991 NA coding upstream 442347 5632327 ~ 5658199 (+)
LOC113536325 NA coding downstream 3058 6112101 ~ 6116707 (+)
cdca7b cdca7l coding downstream 79126 6188169 ~ 6197615 (+)
sp8a LOC108257401 coding downstream 163904 6272947 ~ 6275012 (+)
polr1f twistnb coding downstream 236428 6345471 ~ 6350729 (+)
LOC113536247 ferd3l,LOC102791589 coding downstream 271117 6380160 ~ 6381337 (+)
G339055 NA non-coding upstream 112054 5987811 ~ 5988492 (+)
LOC113536203 NA non-coding upstream 118814 5975872 ~ 5981732 (+)
G338961 NA non-coding upstream 245116 5854658 ~ 5855430 (+)
G338842 NA non-coding upstream 372240 5727178 ~ 5728306 (+)
G338814 dnmt1 non-coding upstream 573937 5525040 ~ 5526609 (+)
G339126 NA non-coding downstream 7706 6116749 ~ 6128284 (+)
G339159 LOC108256777 non-coding downstream 65278 6174321 ~ 6175597 (+)
G339167 NA non-coding downstream 91450 6200493 ~ 6201623 (+)
LOC117595885 NA non-coding downstream 204442 6313485 ~ 6319774 (+)
G339275 NA non-coding downstream 365439 6474482 ~ 6526317 (+)
stxbp2 stxbp2,LOC107670524,LOC107587946,LOC107711254,LOC107757364 other upstream 1320160 4761313 ~ 4780386 (+)
LOC113546199 pet100,LOC107672445,LOC107563330,LOC107587949 other upstream 1337944 4757814 ~ 4762602 (+)
brd4 LOC108257120,LOC108429657 other upstream 1347877 4698257 ~ 4752669 (+)
pbx4 pbx4,LOC107757367,LOC107672472,LOC107670485,LOC103392870,LOC102788435 other upstream 1432290 4616324 ~ 4668256 (+)
G338163 NA other upstream 1745517 4352522 ~ 4355029 (+)
LOC113535938 tmem196,LOC106588729,LOC107667578,LOC107568813,LOC107755951,LOC107571147,LOC107655099 other downstream 224946 6333989 ~ 6343909 (+)
mturn mturn,LOC107559763,LOC107572558 other downstream 495562 6604605 ~ 6616023 (+)
G339324 NA other downstream 601972 6711015 ~ 6717146 (+)
LOC113536074 LOC108257189,LOC108257413 other downstream 2131654 8240697 ~ 8271499 (+)
G340208 LOC108256789 other downstream 2173917 8282960 ~ 8285204 (+)

Expression


Co-expression Network