sostdc1b (LOC108257373)


Basic Information

Item Value
gene id sostdc1b
gene name LOC108257373
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11810109 ~ 11815273 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930095.2
ACCATCAATGCAAGCGCACACCCCTTTCTTACAAACCTCACTTGCCAGGCAAGTGCTGTTGGCTGAAGGCGGGGAGGGATGAGTATAAAACCATATAATCATATGAGCTACAGGTGATATCACCTCACTCATGCAATGTTTAGAgactcactgagcactggaAGGCTACTGGTGTCATATACACTTGAACATGCATGGTTACTGGCTGATGATTGTCTTCTGTGCCCTGCTGAAGAGCTGCCAAGGAGTTCAGAATGGTGCCACTGAACTGTCGGATGGCATCGCGGCCTCTTCGCTCCAGGAACCTCAGGCCAATGGATCTGTAAACAAAGCGCGGGGCGGCGGGAGACGTACAGAAAGCACAGGGCAAATAGAGCAAAGCCAGTTGGGCTGCAGAGAGCTGCGTTCCACCAAGTACATATCAGACGGTCAGTGCACCAGCCTGAAGGCGGTGAAGGAGCTGGTGTGTGCTGGTGAGTGTCTGCCCACTCAACTGCTACCCAACTGGATCGGAGGAGGATACTGGGCACGGCGGGATGCGTCCGAGTGGAGGTGCGTGAACGAGCATATGCGCACGCAGCGCGTCAGGCTCTGGTGCCAGGATGGCAGTACACGCACGTACAAGGTCACTGCTGTGACCTCGTGCACTTGTAAGCGCTATACAAGGCAACACAACGAGTCCCAGCTGAAGCCGTCACCCCAGAAGGCCACCTCAAAGAAAAAACGTAGAGCAAATGCAGAGGAGTAGAGCGGGGTTTAGTTCACTCCCAGCTGAAAACTTCACTGTCATCATCTTTTAACCTCACATCACCTTTCTGTACTGGAAGGCCACTGATTTTCAAGAACACTGACTCACGATAAGATATGGAACTTGTAGTTGGATCTcttaattctgtgtgtgttttgtctctctCTAGGAGCCTCCCTCTGTGTGTTTACGAGAGCTTGTGTCTTCACGTGttcattttttcttctgtttcgcAACTCTCCCCCAAGGCCATATTTTTTAACAGGGTTCATAAAATGCTTTTCCTTTACtagaaatgaaatttaataGAGGTACACTATGTAGATAACACTTTGGAAGGAAGATATTGAATATTTTCTTCTGAAATAACATGAGAAAGTGCAGCAGACTAAAGTCAGACCTCATTTAAACCCCAAGGCAATGTTAGTTTCCTTGGGAAATAATGAActgaaaacaattttaatgagAGAAATTAGGCTTCACGTGTGAAGACATTAAGACTTCAGCACTGGCACAATATTTTGCAGTGTCActgtcatgtttaatgttttgcaATATAGTAAACATTTTCAGAATTGTTATAGTTTATTGATGAGATCTGTTATACCCATTTTATATTCCCATTGTAGCCAAAATATTTGCCTTGGGTGCAATAAATCAGATAGCTTTTTTATCATGGTTTGTGTCAATAATTCTGCACCCAGCAGCCACAAGTTTGATGTGCCAAGggtggatttggaaaagaagaTTTAGTCAAAAAGAAATCTTCTGACTCATTGCTGTGAGGGGATACCCTCAGCCCAAGGCATATCAGCCTCTCTTTGTGGTAACATGTTACTGAatggttgtttttttgtattctaGGTCCTTTCATTCCTCATTTCTAAAAGTAGCACTGTTGTGCAATTACACAGTACCTTCCCCCAGGCCACTGTTTTGAGCAGTTCATCAAGAGTTTTCCATTTCCTATAGACAGCAGTGGAGTGACTCTGAGCACATAACATTTTGGGTGGAGATGAAATAATttcaaaaggaataaaatgtgagaaggaaaataaagtCTGGTCTTGCCTAAAGGATTACTCTACCTGTTTACGTCTAAGAAGAACAGCAAACCTATTTACGATTTTATATTAGAGGTTTCATGGCAGGTGTTGGAGcagtcaataaacatttatatgaatcatttttaaaaaatgctttcatGAATTTTTCAGCCAAACATACATGTTTGCAAATGAAATTTCATTCATATAAttcaatatatttcatataattcaTTCTTTCAGAGATGGGACTACTTAGTCAGACAGAAGAATGTGTGTTTCATGGCATGATGGCACAGGAGGTAGCATTGCCagctcacagcttcagggttttcagttcaatcctgagctcaggttactgactgtgtggagtttctcatgttctcgcTGTGTCCATATGGGGTTCCTCCTGCTTCACTGGTTTTCTCCCTGCTCCAAAAATATGCAGgtatgtggattggctatgctaaattgcccctaagtgtgaatgttaggaataaatgtgtgtacGGTGGCCTGTGGTGGACTGGAATCCCATACAGGATATATTCCCATGTCATGtgcagtgttcccaggatagtctCTGTACCTACCGTGACCCTGActgggataaagcagttattgaagatgaatgaaaagaaTTTGTGGTTACATGCTGCCAAATCAGTCAATGTAGCTCAAAGTAAGTATATACATTCACTTCCACTTTCACATGGCACATGGAATTAGTTTTTTGTTCCGGagtttaaaagttaaataaacctACACATGAACAGCTTTGGTAATACATTCACTCATGCCTGTTTCCT
>XR_004577055.1
ACCATCAATGCAAGCGCACACCCCTTTCTTACAAACCTCACTTGCCAGGCAAGTGCTGTTGGCTGAAGGCGGGGAGGGATGAGTATAAAACCATATAATCATATGAGCTACAGGTGATATCACCTCACTCATGCAATGTTTAGAgactcactgagcactggaAGGCTACTGGTGTCATATACACTTGAACATGCATGGTTACTGGCTGATGATTGTCTTCTGTGCCCTGCTGAAGAGCTGCCAAGGAGTTCAGAATGGTGCCACTGAACTGTCGGATGGCATCGCGGCCTCTTCGCTCCAGGAACCTCAGGCCAATGGATCTGTAAACAAAGCGCGGGGCGGCGGGAGACGTACAGAAAGCACAGGGCAAATAGAGCAAAGCCAGTTGGGCTGCAGAGAGCTGCGTTCCACCAAGTACATATCAGACGGTCAGTGCACCAGCCTGAAGGCGGTGAAGGAGCTGGTGTGTGCTGGTGAGTGTCTGCCCACTCAACTGCTACCCAACTGGATCGGAGGAGGATACTGGGCACGGCGGGATGCGTCCGAGTGGAGGTGCGTGAACGAGCATATGCGCACGCAGCGCGTCAGGCTCTGGTGCCAGGATGGCAGTACACGCACGTACAAGGTCACTGCTGTGACCTCGTGCACTTGTAAGCGCTATACAAGGCAACACAACGAGTCCCAGCTGAAGCCGTCACCCCAGAAGGCCACCTCAAAGAAAAAACGTAGAGCAAATGCAGAGGAGTAGAGCGGGGTTTAGTTCACTCCCAGCTGAAAACTTCACTGTCATCATCTTTTAACCTCACATCACCTTTCTGTACTGGAAGGCCACTGATTTTCAAGAACACTGACTCACGATAAGATATGGAACTTGTAGTTGGATCTcttaattctgtgtgtgttttgtctctctCTAGGAGCCTCCCTCTGTGTGTTTACGAGAGCTTGTGTCTTCACGTGttcattttttcttctgtttcgcAACTCTCCCCCAAGGCCATATTTTTTAACAGGGTTCATAAAATGCTTTTCCTTTACtagaaatgaaatttaataGAGGTACACTATGTAGATAACACTTTGGAAGGAAGATATTGAATATTTTCTTCTGAAATAACATGAGAAAGTGCAGCAGACTAAAGTCAGACCTCATTTAAACCCCAAGGCAATGTTAGTTTCCTTGGGAAATAATGAActgaaaacaattttaatgagAGAAATTAGGCTTCACGTGTGAAGACATTAAGACTTCAGCACTGGCACAATATTTTGCAGTGTCActgtcatgtttaatgttttgcaATATAGTAAACATTTTCAGAATTGTTATAGTTTATTGATGAGATCTGTTATACCCATTTTATATTCCCATTGTAGCCAAAATATTTGCCTTGGGTGCAATAAATCAGATAGCTTTTTTATCATGGTTTGTGTCAATAATTCTGCACCCAGCAGCCACAAGTTTGATGTGCCAAGggtggatttggaaaagaagaTTTAGTCAAAAAGAAATCTTCTGACTCATTGCTGTGAGGGGATACCCTCAGCCCAAGGCATATCAGCCTCTCTTTGTGGTAACATGTTACTGAatggttgtttttttgtattctaGGTCCTTTCATTCCTCATTTCTAAAAGTAGCACTGTTGTGCAATTACACAGTACCTTCCCCCAGGCCACTGTTTTGAGCAGTTCATCAAGAGTTTTCCATTTCCTATAGACAGCAGTGGAGTGACTCTGAGCACATAACATTTTGGGTGGAGATGAAATAATttcaaaaggaataaaatgtgagaaggaaaataaagtCTGGTCTTGCCTAAAGGATTACTCTACCTGTTTACGTCTAAGAAGAACAGCAAACCTATTTACGATTTTATATTAGAGGTTTCATGGCAGGTGTTGGAGcagtcaataaacatttatatgaatcatttttaaaaaatgctttcatGAATTTTTCAGCCAAACATACATGTTTGCAAATGAAATTTCATTCATATAAttcaatatatttcatataattcaTTCTTTCAGAGATGGGACTACTTAGTCAGACAGAAGAATGTGTGTTTCATGGCATGATGGCACAGGAGGTAGCATTGCCagctcacagcttcagggttttcagttcaatcctgagctcaggttactgactgtgtggagtttctcatgttctcgcTGTGTCCATATGGGGTTCCTCCTGCTTCACTGGTTTTCTCCCTGCTCCAAAAATATGCAGtgttcccaggatagtctCTGTACCTACCGTGACCCTGActgggataaagcagttattgaagatgaatgaaaagaaTTTGTGGTTACATGCTGCCAAATCAGTCAATGTAGCTCAAAGTAAGTATATACATTCACTTCCACTTTCACATGGCACATGGAATTAGTTTTTTGTTCCGGagtttaaaagttaaataaacctACACATGAACAGCTTTGGTAATACATTCACTCATGCCTGTTTCCT

Function

NR:

description
PREDICTED: sclerostin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930095.2 True 2603 mRNA 0.43 2 11810109 11815273
XR_004577055.1 False 2485 misc_RNA 0.43 3 11810109 11815273

Neighbor

gene id symbol gene type direction distance location
LOC113536236 LOC108257374,LOC107702070,LOC107584324,LOC107724274,LOC106588710 coding upstream 3688 11798056 ~ 11806421 (+)
sync sync coding upstream 36546 11768970 ~ 11773563 (+)
yars1 yars,LOC107687080,LOC107691530,LOC107724337,LOC107709269 coding upstream 94288 11706658 ~ 11715821 (+)
mfsd2ab mfsd2a,LOC107687081,LOC107724351,LOC107568806,LOC107584275,LOC107709268,LOC107691531 coding upstream 104992 11690437 ~ 11705117 (+)
fam49al fam49a,LOC108257369,LOC103035846,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC101166565 coding upstream 240166 11541503 ~ 11569943 (+)
meox2b LOC108256791,LOC107724325,LOC107584352,LOC107702081,LOC107696195,LOC107709256,LOC107568803 coding downstream 17317 11832590 ~ 11841066 (+)
LOC117595868 NA coding downstream 53942 11869215 ~ 11871010 (+)
si:ch211-57n23.4 si:ch211-57n23.4,LOC108256859,LOC108424704,LOC107593575,LOC107722127,LOC107731740,LOC107670070 coding downstream 132077 11947350 ~ 11968642 (+)
gatad2b gatad2b,LOC107593536,LOC107706168,LOC107731554,LOC107696601,LOC107591599 coding downstream 208621 12023894 ~ 12063869 (+)
tinagl1 tinagl1,LOC107706169,LOC106588893,LOC107669690,LOC107593537,LOC107731519 coding downstream 266804 12082077 ~ 12108662 (+)
G342189 bzw2,LOC107709265,LOC107724358,LOC107691535,LOC107702135 non-coding upstream 12314 11787073 ~ 11797795 (+)
G342190 bzw2,LOC107724358,LOC107568798 non-coding upstream 25129 11782266 ~ 11784980 (+)
G342079 NA non-coding upstream 220884 11589018 ~ 11589225 (+)
G342067 NA non-coding upstream 226254 11583642 ~ 11583855 (+)
G341890 NA non-coding upstream 336130 11385036 ~ 11473979 (+)
G342208 NA non-coding downstream 47973 11863246 ~ 11930057 (+)
G342333 NA non-coding downstream 460473 12275746 ~ 12275952 (+)
G342496 NA non-coding downstream 572511 12387784 ~ 12388775 (+)
G342538 psmb4,psb4,LOC107593590,LOC107696528 non-coding downstream 641434 12456707 ~ 12460218 (+)
G342546 NA non-coding downstream 659071 12474344 ~ 12476263 (+)
dlgap3 dlgap3 other upstream 336786 11314530 ~ 11473323 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other upstream 515753 11292291 ~ 11294356 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 1328139 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 1613107 10193747 ~ 10197002 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 2580471 9224604 ~ 9229638 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 876734 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 970564 12785837 ~ 12792473 (+)
si:ch211-199g17.2 NA other downstream 1089350 12904623 ~ 12954725 (+)
G342718 klhl43,LOC108256975,LOC108426671,LOC107591641,LOC107742826,LOC107696549,LOC107589442,LOC107706211 other downstream 1261897 13077170 ~ 13081229 (+)
slc30a8 slc30a8,slc30a2,rprd1a,LOC108256818,LOC107754284,LOC107696534,LOC107696508,LOC106570487,LOC107654669,LOC107592974 other downstream 2390448 14205721 ~ 14231844 (+)

Expression


Co-expression Network