ccn4a (wisp1,LOC108425715,LOC107670277,LOC107724346)


Basic Information

Item Value
gene id ccn4a
gene name wisp1,LOC108425715,LOC107670277,LOC107724346
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 10147649 ~ 10154191 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930122.2
CACGAGACTCCGTATGGCAGGCTTCACCGGCAGCCTTAGCGAGGAAGAGGACTTGCGCCTGGACACTCTGTTTTACATTCAACATCTAATTCTGGATTCAATGTATTTACCACTGGGGTTCAGTAATGAGCTGGCTCCTGACCTGGGTCCTGCTTGTTGCCCGATTACATCAGGCCATTTCCCTGAATTCCTCCATTGCGCCATTCATACATGAGTCTACTACCCCTGAGCCCTACAACCGGACTCAGTACTGTAAGTGGCCCTGCAGCTGCCCTGAGACTCCCCCGAGCTGCCCGCCTGGTGTCAGCCTCATCATGGATGGCTGTGACTGCTGTAGGGCCTGTGCCAAGCAGGTAGGCGAGGAGTGCAATGAGGCAGACAACTGCGACCACCACCGCGGCCTCTACTGTGACTACAGCTCAGACAAGCCTAGGTACGAAAaaggagtgtgtgcatATCTACTCGGCACAGGCTGTGAGCACAACGGTGTAATCTATCGCAATGGGCAGAGTTTTCAGCCCAACTGTAAATaccagtgtctgtgtgtgaacgGGGCCATCGGCTGTGTACCGCTGTGTAATGAGTCTCAGCCTCCAAGGGTGTGGTGCCCAATGCCAAGGCGGGTCAAGATCCCCGACCGCTGCTGTGAGCAGTGGATCTGTGAGGAGCCCAGGAAAGGGCGCAAAGCAGCACCTCGGCATGCCATGGCAGCTCTCTCCAGTGGAAAAGACACTTGGCAGGAGAACTGTGTGACACAGACAACATCTTGGAGCCCGTGCTCCAAGACCTGTGGCCGAGGAGTATCTTTACACATCACTAACGCCAACAAGCAGTGTCGGATGGTCAAGGAGAGACGGCTTTGCAACATCCGACCCTGTGAGGTGGACATCACTAAGCACATTAAGCCTGGAAAAAAGTGCCTAAACATCTACAGGGAAGATCAACCGACCAACCTCACCATCTCAGGCTGCACTAGCAAGAAGCTCTACCGGCCGAAGTACTGTGGTGTCTGCACAGATGAGCGCTGCTGCATCCCTTATAAATCCAAAACAGTGCAGGTGGAGTTCCAGTGCCCGAATGGAGCCATGGTCACTTGGCAGGTGATGTGGATTAATGCCTGCTTCTGCAACCTCAGCTGCAAAAACCCCAATGACATCTTTGCAGATTTAGAGCAGTACTACGAGAATCGAGAGATTATGAACTGAGGACCAGGCGACTGCTGTGCTGCTGTTCCATCGGTCACCTTTTGGAGTTGACACAATAAAAAGGAtcaaaacaacagaaatgttttttatacCATAATGGAGTAAATTCTAAGCAATAGATATCACACTTAATTACTGAATACAACATTATTGCTGGGTCTATAAAATTTGGTGATTcatattacagtaatgtttcTGTGGTTAAATCATTgttatttaatgctttttaataaCTGGCAAACAAAAATATGGCAGAACTAAGTTACTTCCTTAGATCTTGATTTTTAGGCAACAGCCATTTTATAATGAGCACTACACCACCACAAAGAAACtcccttgcataagtattcacacccttGAACCTTTTGATGTTTTGTAGTGTATATAGCCTGGAATTGAAAATGACTTCATTAGGATTTTTACCAATTGATTTACACAAAATGTCTAACGTTTCAAAGTTCCACATACTTTTAATGTGACACAAAGattcattaaacaaaaaaaagcagacaataCTTGTGTAGCAAATGGCAGTGGAACTCAGATGCACAGCAGACCCAGGTTGGGATAGCTGGTcacacgtctcacacacacactcatcagcctggctcactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagggagagagagcttGTTAATGACCATTCTCAAATGCTCACTCAgtatctacatttttttttctctgttcacCATTCTTCCACAAATCTGATTTTTGGAATTGATTTCCCCCACATGTATAATGATGACATacaatcccaattaagtcctcttcagttccaggttgtaatgctataaaatgtgaaaaaaaattgaatacatatcatttttttttaagccagcAGCGTCAATCTCAGGTCAAAGAGGTGCCATGGCCCTCTTCTGTGAGAAGGCacttaacaaaaagaaaatatccCAAATAACCCTGTTATAAGCATCAAAACGTTCCCCACACCAATACCAGTTAACAGTACCTCAGTTTGTGaatttacaaatacaaacaaactatATGTTTCCTGAGGTAGCAGTAAAAACatggaacaaaagaaaaagaaatgcgGATTTTAAATGATGCAGCACtacattttggctcttttattcctttcagGTACAACGTACTAGTACAAAATATAAtgctaatatactgtatcttgTACTTGACCTTGACCAATAATTATAGGTAAACTGACTGGTTGTCATGAccattttaataacaaaaaaatctaaGGAACATAGTGTACATCAGTTGTTCCCTttgaaataaatgctttttatcAGTGTGAAATTGTGTAGGCTCCATTACGTCAGATTGGACTGCAACCCAAATTTAGTCAATGATGGTCTTGATACTTAATAGATGAGTTGAATCATGTGTGTTAAATGAAGTAGCATGACAAACTCTGCAGTGACTGGAGTCTGACGCTTCTGTTTTAAGCCTTATCCACTGATATACACAGAATGTTTCTCTCACAAGGTCTTTGACTTTTTCCTATTGGAAGAAATTGGTGCTCTATAGTACAGATGCAGTATATCTGGACATAATTTCTGACTTCAATATTACTTTTATTGCaatcataaaatattttatatttctgacATATCCTGTTTCCCTTCTTTTGACTTAATGAAATTGAATAATTGAATTTGCATGAGGTTTATGATGTAAGTAATACATTTGTTAAAAAggaacaaaatattaaattctATAGATTGCACTTAGGCTTTAACTTATTAATGGATGTGTAAAGCTGAAATATAGCATATAACTTGGTCTGGTGTTAActccagaaaaaaatataaaataaataacacatgctGTGactgatattttgagcttaCATATAGTACTGATTGTCTCAGAATTATCGGCGCCTCTACAATATGTTGAAGCATACTCTGGAGAcaataacagcattttattgta

Function

symbol description
wisp1 CCN family member 4

NR:

description
PREDICTED: WNT1-inducible-signaling pathway protein 1

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
K22471 CCN4, WISP1; CCN family member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930122.2 True 3157 mRNA 0.42 5 10147649 10154191

Neighbor

gene id symbol gene type direction distance location
abitram fam206a,LOC107710376,LOC107556369,LOC107556344 coding upstream 99762 10042424 ~ 10047887 (+)
gabbr2 gabbr2,LOC107670291,LOC107724329,LOC107710365 coding upstream 141117 9822703 ~ 10006532 (+)
LOC113536234 NA coding upstream 341545 9804036 ~ 9806104 (+)
galnt12 galnt12,LOC108425758,LOC107724331,LOC107670286 coding upstream 346565 9782215 ~ 9801084 (+)
poc1bl LOC108257092,LOC103026965,LOC108425761,LOC102236136 coding upstream 367938 9761655 ~ 9779711 (+)
wdyhv1 wdyhv1 coding downstream 33502 10187693 ~ 10190316 (+)
angpt2b LOC108256759,LOC108425532 coding downstream 443225 10597416 ~ 10620173 (+)
LOC113536281 NA coding downstream 902914 11057105 ~ 11078437 (+)
cx30.9 NA coding downstream 1121635 11275826 ~ 11283228 (+)
pef1 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding downstream 1130342 11284533 ~ 11291582 (+)
G341038 NA non-coding upstream 416680 9728928 ~ 9730969 (+)
G340967 NA non-coding upstream 478421 9627788 ~ 9669228 (+)
LOC113536134 NA non-coding upstream 582123 9557697 ~ 9565526 (+)
G340687 NA non-coding upstream 900601 9246479 ~ 9247048 (+)
LOC113536151 NA non-coding upstream 966435 9174943 ~ 9181214 (+)
G341468 NA non-coding downstream 244019 10398210 ~ 10398409 (+)
G341469 NA non-coding downstream 244762 10398953 ~ 10399867 (+)
G341449 NA non-coding downstream 283213 10437404 ~ 10458143 (+)
LOC117595845 NA non-coding downstream 292137 10446328 ~ 10447955 (+)
LOC113536353 NA non-coding downstream 295245 10449436 ~ 10454792 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 918011 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 1013470 9119014 ~ 9134179 (+)
sem1 NA other upstream 1231803 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 1862445 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 1876150 8240697 ~ 8271499 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 39556 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 320292 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 1138100 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 1160339 11314530 ~ 11473323 (+)
sostdc1b LOC108257373 other downstream 1655918 11810109 ~ 11815273 (+)

Expression


Co-expression Network