LOC113536281


Basic Information

Item Value
gene id LOC113536281
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11057105 ~ 11078437 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930135.2
TCGGATTCCGAGTCGTCAAGCGCGTcctgattgtttttgtttactttcgGAATGAATTGCATCGTCCATCTCAATCCAAACATTACAAACGCGAAGGCTCCATCATGCGAGACTAATCTACACTTACTGAGGGGTTTAAATCAAACCGCAGTCCGCGCTGACACTCTGTATAAAAATGTTGGCACCCTCTGGTGTGGAGAGACCGAGAGGAAGCCCTAAGCGCGCTCCCGCCCTCGGGCCTTTCCCGAGATCGATATGGATCCATCCAGACATTCCCGAGGACGAGCTGGATAGAGTGTGCTTTAGAATATGGAGACGCTCGGTTCTGGCCCAGAGGGGCATATGGCCACACTTAGCAGAAAACGTCCCCAGGTTTATGCACGACCCGCTGATGATGGACATCAACAGCATCAGCAGACAAAAGCGACCTGAGGAGATCTTAGCTGGAATGCTAGTGAGGCAGTATGAGTTGGAGGAGTGGACCTTGTTGATCAAGAGAGAAAAGGGCCAGATGCCTCAGCATCAGAGTGATACCACGGCTCCTGACCCTGGCATTCTAGATGAGACCATCATAAGTGTTACGGAGGCCAACCAAAGAAAAATTGAAAGGTTTCTGAAGGATGTCCTTATCCCAGATCATGACAAGAAGAAGGAGGCTAGCTTTGATAGTCTGTCAATGGAGGATTTCCCCCCACTGCCCAGCGCTGCTGCACCATGGAACCGTGCTCAGAGAGATCAGGccaaaaaagacaagaagaagaaggctaGCTTTGATAATATCCCAAAAGAGGATTCCCCCTCACTGCCTAGCGCTGCCGCACCATGGAATCGTGCTCAGAGTGATCATGCTAAAAAAGAGATTTCCTCGATCCAGGCATCATCTTCCAAAAGCCAGGTATTTAATCACCTGACAGATCCAAATCCAAGAAGGAACAAAAGGTTGCCAAAGAACCAGAAGTTCAAGCCTGTGACACCCACCAAATCAGCAATAATGGAGGAGATTGAAGAACTCCAGGTCTCAAAGAACCGTAATGAGCTGTGTATCCAGCCGTCAGATCCAAGCCAAAGAGGAGATGTTACAGAGCCAGCAAAAGTGAAAGTGTCTGCTGAAGAAGCCATGTCTGATGGTGGAGGTGGACTGCCGGGCATGAGTGCAGATGGTGCCCATGCACCACACAACCCAGCTGGCACTGACACTGAGAGCATGAGGAAGGCAGCTGGCACTGCTAAAAATGCCAAAAACCACCTCTTCCAGGAGGATACCACAGTGCCGTGGTGGAAGACCCCGGGTTCAGCCAGTCATAAAGGTGCACCAGAAGGACATATGGCCAGAGTCCAGGAAGTTGAGTTGGGGAACAGCAGCAGGTCTATCCCACGGAATGTGGCATTTCCAGTGCCACAGGCTTATGTTCCTAGCCCTTGCAAGCCTTACCCAGGTTATCCTGCTCCCCGGCTGCCCATGCATCACCCACCTGGCTTTGTCCAGCCTCAGATAAACCCAGTGATGGCCTATGCACTACTCATCTGTGGCATGTTGCCACCAGTGCCTCCCTTCCAGAACTTCCACATGCCCACCAATTCCTACTGGCAGCCCCCTTCACTCCACCACAGTGGCAATTTCCCAGGCTTTGTGACTTCACAGGTGGCAAAGAGACAGCATTTCCCCGGCTCACCAAACAGAAACATTGATTAGCCTTCTTCTTTGGGGAAAACATTGCATCCAGGCCTTTGTCACCAAGAAGGAAAGCCAGCAGTGTGTAAGACCAGCTCCTGCTGCAGACTACAATAGCTATGCAGCTGTTCCTTTTCTAGttCCACAACTTCATATCACTTGACGGGGTGTGCCCAGGAccgtgtttttgttgttgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930135.2 True 1870 mRNA 0.51 8 11057105 11078437

Neighbor

gene id symbol gene type direction distance location
angpt2b LOC108256759,LOC108425532 coding upstream 436932 10597416 ~ 10620173 (+)
wdyhv1 wdyhv1 coding upstream 866789 10187693 ~ 10190316 (+)
ccn4a wisp1,LOC108425715,LOC107670277,LOC107724346 coding upstream 902914 10147649 ~ 10154191 (+)
abitram fam206a,LOC107710376,LOC107556369,LOC107556344 coding upstream 1009218 10042424 ~ 10047887 (+)
gabbr2 gabbr2,LOC107670291,LOC107724329,LOC107710365 coding upstream 1050573 9822703 ~ 10006532 (+)
cx30.9 NA coding downstream 197389 11275826 ~ 11283228 (+)
pef1 pef1,LOC107664714,LOC107726139,LOC107712637,LOC107698987 coding downstream 206096 11284533 ~ 11291582 (+)
fam49al fam49a,LOC108257369,LOC103035846,LOC107691525,LOC106589091,LOC105892259,LOC105006285,LOC101166565 coding downstream 463066 11541503 ~ 11569943 (+)
mfsd2ab mfsd2a,LOC107687081,LOC107724351,LOC107568806,LOC107584275,LOC107709268,LOC107691531 coding downstream 612000 11690437 ~ 11705117 (+)
yars1 yars,LOC107687080,LOC107691530,LOC107724337,LOC107709269 coding downstream 628221 11706658 ~ 11715821 (+)
G341449 NA non-coding upstream 598962 10437404 ~ 10458143 (+)
LOC113536353 NA non-coding upstream 602313 10449436 ~ 10454792 (+)
G341445 NA non-coding upstream 605543 10450465 ~ 10451562 (+)
LOC117595845 NA non-coding upstream 609150 10446328 ~ 10447955 (+)
G341469 NA non-coding upstream 657238 10398953 ~ 10399867 (+)
G341894 NA non-coding downstream 240318 11318755 ~ 11319077 (+)
G341890 NA non-coding downstream 306599 11385036 ~ 11473979 (+)
G342067 NA non-coding downstream 505205 11583642 ~ 11583855 (+)
G342079 NA non-coding downstream 510581 11589018 ~ 11589225 (+)
G342190 bzw2,LOC107724358,LOC107568798 non-coding downstream 703829 11782266 ~ 11784980 (+)
G341451 col8a2,LOC107565043,LOC107710560 other upstream 575135 10474483 ~ 10481970 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other upstream 860103 10193747 ~ 10197002 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 1827467 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 1922926 9119014 ~ 9134179 (+)
sem1 NA other upstream 2141259 8912928 ~ 8915846 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 213854 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 236093 11314530 ~ 11473323 (+)
sostdc1b LOC108257373 other downstream 731672 11810109 ~ 11815273 (+)
fabp3 fabp3,LOC106570598,LOC108426441,LOC105892250,LOC107742844,LOC107669374 other downstream 1613570 12692007 ~ 12695512 (+)
LOC113536228 nobox other downstream 1707400 12785837 ~ 12792473 (+)

Expression


Co-expression Network