calcr (calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776)


Basic Information

Item Value
gene id calcr
gene name calcr,LOC107669839,LOC107558586,LOC107712922,LOC107667776
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 9263761 ~ 9315951 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930171.2
GGCTGGCAGTTAGACGCGCTTGGACTACCGGCAGCTCAGCTGAAACGACGGTACCCACCTCTGCGTCTTCATCACAGCGCTCATTAAAAAGTGCACATCCATCATTGAaacactgccattttttttacaccagCGCTTTAATTGTTTTCAAATTAAGTGGATATGATTTTTAGGAGAAGTAAACAAGAGATAAATAAGGTAAGAGAGTGAAGCATCACCGTGCGTCCTCGACAACTTAGTGCGCCTTAGGATGGAATTCAGTGGTTTACCTTCAGGACATCAGAACTGAGCACAACGAGGACTTCACCTTTTCCCCTGCAACGACAGATAGAATCTCAGAGCATGGGTTGGAAAGGTATCTACTGGCTTTTAATGTCGTTTGTGTCGTGGATAACTGCTGTGGGCGGAGCGGAGCCTAAAGCCGAACCAACCACAGACTTTTCTCTCGCTCCTGCTATGGGGGTGATGGAGGGGGAGCGCCAGATCATGACTGAATCTCAGTATAAATGTCTGGAGCTGTTGAGCAGAGATGGAACACGCAATAAAACAGctTCCCACTGTAGCCGGTTTTGGGATGGCTGGCTATGCTGGGATGAAACCCCTGGGGCTTATGCTTCTCAGAGCTGTCCAGACTACCCCACCTTTGACACCTCAGaaaaaataaccaaatattGTGATGAATCTGGTAATTGGGCTCACAGCATGTCAATAAATAATACCTggtctcagtgtctcagcatCTCAAAGGACAAATTAAAGAAAGGATCTGGTAATAGTGAGATGGAGCCAGAGGCTGATACCACAGCAGAAACCCTGGTCAGTCCTGTGGAAACTCAGAAagcagaggagaggaaaaaaatcattgatgGTCAATATAAATGCTTTGAGAAAATGAACAGAGACCCACCTTATAACAAATCAGGTCTGTACTGTAACCGCACATGGGATGGGTGGCTGTGTTGGGACGATACACCTGCAGGAACATACACATCTCAAAACTGCCCCAACTACTTCCCTGACTTTGACCCCACAGAAAAGGCCATAAAATATTGTGATGAGACTGGGAACTGGTTTCTACATCCTGAGACAAACAGGACATGGTCCAACTACACCCTCTGCATTGCTTACACTAAGGACAAGTTAAAGAATGCATACATTCTGTACTACATGGCAATCGTGGGTCATGCTTTGTCCATTGCGTCCCTCCTCATCTCTCTGGCAATATTCTTTTACTTCAGGAGTCTAAGTTGCCAAAGGATCACCTTGCACAAGAATCTGTTCTGCTCTTATGTGCTCAATTCAGCCTTCACTATAATCAACCTCACATGTGTGGTCAACAACCCAAAAGTGGTGGACAGGAACCCGGTTGGTTGTAAGGTGCTACAGTTCTTCCACATGTACATACTGGGCTGTAACTATTTCTGGATGCTGTGTGAGGGAATCTATCTGCATACTCTTATCGTGGTGGCGGTTTTCGCTGAGGAGCAGCATCTTCACTGGTATTATCTCTTAGGATGGGGTTTTCCCCTGGTGCCTGCCTCCATCCAtgcagtggcaagaaaaaagtATTTTGATGACAATTGCTGGATGAGCGTGGAGACCCATCTGCTATATGTGGTTCATGGACCTATTGTGGCAGCTTTATTAGTGAACCTGTTCTTTCTGCTGAACATTGTGAGGGTTTTGGTGATGAAGCTGAAGGATACCCATCGTGCAGAGTCCAACATGTACATGAAAGCAGTACGAGCCACTCTCATTCTCGTGCCCTTGTTAGGAATCCAATTTGTCATATTTCCATGGAGGCCAGAAAACCGTTTGGCTGGAGAAGTATATGACTATATCATGCACATATTACTGCATTACCAgGGCTTGTTGGTGGCAACAATATTCTGCTTCTTCAACGGAGAGGTTCAGGCTACTCTGAAGAGGCAGTGGATGCAGTACAAGGTGCAGTGGGGTCAGCGACGCCGTGAACACTGGTCTATGCGCTCCACATCATACACCACCACGTCCATCACAGAGGTGCCCGCTTTCATGTTCCATTACGACAACAACAGTGAACATTTGAATGGCAGGCACGTCGATGACTCAGCGTGAACATGTGGCTCTCAAGGTCAAACACATCTACACCTGAGGCACAAACCATCAGAGAAATATATgagaaacaatttttttcaaagaatGCCATAAGAAAGAAGGAAACCAAGGAAACTGGAGACTCTATTACTAGGAGATCACATGTACAGTCCTTGCAGATTCTCCCATCTCAGGGCGGCAACATGACACCCAGTACATGTGTGTTGGCAGCAATGTCTCACTGAGACGCGTCCCGAAGTGTACACTACCATTCAAAAGTTTGGAATCATCTGTTACATATTCaacatacattattttatttactaaaaacaTATACCATATATTACACACAGAGTATTTTTAGAGGTTTTATatagtatttaaaatattttgggaaaaacagtgttattaaatgataaatcatATACAGGAAGTATTTATGTTTATAcgacagcattgttgaattctcaaaactggttggtcaaaaggtgttgattaattttctataacagc

Function

symbol description
calcr Predicted to enable calcitonin receptor activity. Predicted to contribute to amylin receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane. Is expressed in several structures, including eye; gill; heart; integument; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in osteoporosis. Orthologous to human CALCR (calcitonin receptor).

NR:

description
PREDICTED: calcitonin gene-related peptide type 1 receptor-like

GO: NA

KEGG:

id description
K04576 CALCR; calcitonin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930171.2 True 2589 mRNA 0.44 17 9263761 9315951

Neighbor

gene id symbol gene type direction distance location
tfpi2 NA coding upstream 8282 9252106 ~ 9255479 (+)
pdk4 pdk4,LOC107722149,LOC107669734,LOC107591595 coding upstream 210431 9034462 ~ 9053330 (+)
dlx5a dlx5,dlx5a,LOC107670186,LOC106570474 coding upstream 389319 8872595 ~ 8874442 (+)
chrac1 chrac1,LOC107591666,LOC107580926,LOC107722130 coding upstream 420643 8839251 ~ 8843118 (+)
c23h6orf62 c24h6orf62,cunh6orf62,zgc:111986,LOC103042486,LOC107555566,LOC107724342,LOC107702127,LOC107743835 coding upstream 438936 8820384 ~ 8824825 (+)
LOC113536235 NA coding downstream 264964 9580915 ~ 9594532 (+)
efcab1 efcab1 coding downstream 281618 9597569 ~ 9600349 (+)
pex1 pex1 coding downstream 288520 9604471 ~ 9618025 (+)
poc1bl LOC108257092,LOC103026965,LOC108425761,LOC102236136 coding downstream 445704 9761655 ~ 9779711 (+)
galnt12 galnt12,LOC108425758,LOC107724331,LOC107670286 coding downstream 466264 9782215 ~ 9801084 (+)
G340687 NA non-coding upstream 16713 9246479 ~ 9247048 (+)
LOC113536151 NA non-coding upstream 82547 9174943 ~ 9181214 (+)
G340592 col1a2,LOC107722140,LOC107667770,LOC107731699,LOC107669816 non-coding upstream 86627 9157458 ~ 9177134 (+)
G340596 NA non-coding upstream 115468 9147811 ~ 9148293 (+)
G340597 NA non-coding upstream 122616 9140439 ~ 9141145 (+)
LOC113536134 NA non-coding downstream 241746 9557697 ~ 9565526 (+)
G340967 NA non-coding downstream 311837 9627788 ~ 9669228 (+)
G341038 NA non-coding downstream 412977 9728928 ~ 9730969 (+)
G341468 NA non-coding downstream 1082259 10398210 ~ 10398409 (+)
G341469 NA non-coding downstream 1083002 10398953 ~ 10399867 (+)
bet1 bet1,LOC107669829,LOC107722155 other upstream 34123 9224604 ~ 9229638 (+)
sgce sgce,LOC107722147,LOC107669779,LOC107665667,LOC107731676 other upstream 129582 9119014 ~ 9134179 (+)
sem1 NA other upstream 347915 8912928 ~ 8915846 (+)
G340208 LOC108256789 other upstream 978557 8282960 ~ 8285204 (+)
LOC113536074 LOC108257189,LOC108257413 other upstream 992262 8240697 ~ 8271499 (+)
zgc:91910 zn706,LOC108425704,LOC107653862,LOC101168967,LOC107556412,LOC104931588,LOC107710523,LOC107670289 other downstream 877796 10193747 ~ 10197002 (+)
G341451 col8a2,LOC107565043,LOC107710560 other downstream 1158532 10474483 ~ 10481970 (+)
smim12 smim12,LOC107726140,LOC107664707,LOC107698988,LOC107563281 other downstream 1976340 11292291 ~ 11294356 (+)
dlgap3 dlgap3 other downstream 1998579 11314530 ~ 11473323 (+)
sostdc1b LOC108257373 other downstream 2494158 11810109 ~ 11815273 (+)

Expression


Co-expression Network